Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009277

Physical Location & Seq

Genomic Coordinates Reverse (-)

31952178 .. 31954552

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32610.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAGCCCTCGTCGCGGTACAGCTCGTACGATGCGCGTTCCTCGACCTCCTCGCACTTCTCCGACCCCTCGTCTTCCACAGAGCTCAAGCTCCCCATTTCCTCACGCCCCGTCGTCAAATCCAAGACCTCGGATCCCAATATCTCCACGATGGTGAAAAAGTTTATGGAAAAGCGGTCGACTTCCAAGGCCAAGCCGATTAACCCGACGGGGCTGGTGATTCCGTCGGATCTGATCGCGGGCGGATTGAAAAAGCCGGCTAAAAATGGGTCGGGTTCGAATTTCGCGGCGCTGGGGAGGAAGCTGTTTGGGAAAGGAGCAGGAACGACCTCGTCCGATAAGAAAAAGGAGGTGAAGGCGTTGACTGAGGTAAAAGGGAACACCAGGACGCTGGCCATGGTGTTGAGGAGTGAGAGAGAGCTCTTGAATTTGAATAAGGAGCAAGAAGTTGAAATTGTCGAGCTTAAATTGATGATTCAAGAAAAGAACAGAGAAGTGGATAAATTGAAGGATTTGTGTTTGAAGCAAAGGGAAGAAATCAAATCTTTGAAGAGCGCAATTTTGTTCCCGGATGTTATGAATTCTCAGCTTCAAGAGCTGTTGGAGAAGCAGGGGTCAGAACTGAAGCAAGCAAAACAAGTAATCCCAAATCTTCAAAGGCAGGTTTGTTCTCTTACTGGTCAGCTTCAGTGCCTTGCAGAGGATCTTGCAGAGGTGAAGGCAGATAAAGGTTCAGTTAGGGCATGTTTTCGACGTGATGACACTTCTCCAAGCACTCCAACTTATGATGACAAGGAATACTCTAATTCTCATGAGTTCAGCTCTGGTGAACCAGCCAGCCCTGGTAGTCCAGATGACATGTTCCTGAAGGATTTGAATCCTTGCTTGACCCCATTTCCAAAAACAAAGTCCAAGGAATTTGACGAGATGGGCTACAACTCCACATATCGACATGATGAAAGCTTATCTGAAAAAAATATGGAGTTTGGATTTAACTCTTGTTCCAGGAAGTTGTCCAAAAGTTCTGATCGTTGCCAGAAGACGGAAACAGAAAGCAGAATAGCACAAGGAAATCGGAGATCGGGTGATGCCAAACGAACTTATGGAAAACAAATTCACCGTAGATTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

42.09

Weight (kDa)

9.4

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17240 AT4G17240
fragaria_vesca	FvH4_3g00551 FvH4_3g00551 FvH4_3g00551 FvH4_3g00551
malus_domestica	MD00G1058000.v1.1 MD10G1336700.v1.1
prunus_persica	Prupe.4G006700_v2.0.a1
pyrus_communis	pycom05g32610 pycom10g28620
rosa_chinensis	RchiOBHm_Chr5g0000761
rosa_laevigata	RLG00000030893
rosa_multiflora	Rmu_sc0000255.1_g000006 Rmu_sc0011992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075470
rosa_rugosa	Rorug04G0386200
rosa_samantha	Rh5AG006300 Rh5BG008100 Rh5CG006800 Rh5DG006800
rosa_wichuraiana	Rw5G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	4 cut(s)	16, 37, 239, 287
AciI	CCGC	5 cut(s)	16, 175, 239, 243, 287
AclWI	GGATC	4 cut(s)	128, 141, 237, 711
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	5 cut(s)	280, 427, 580, 917, 1113
AcuI	CTGAAG	3 cut(s)	644, 671, 887
AfaI	GTAC	2 cut(s)	20, 29
AfiI	CCNNNNNNNGG	3 cut(s)	15, 700, 1042
AflIII	ACRYGT	1 cut(s)	858
AhdI	GACNNNNNGTC	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	755
AjnI	CCWGG	3 cut(s)	383, 841, 1004
AleI	CACNNNNGTG	1 cut(s)	152
Alw21I	GWGCWC	2 cut(s)	87, 423
AlwI	GGATC	4 cut(s)	128, 141, 237, 711
AoxI	GGCC	2 cut(s)	189, 393
ApoI	RAATTY	5 cut(s)	280, 427, 580, 917, 1113
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AspLEI	GCGC	3 cut(s)	37, 292, 557
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	7 cut(s)	166, 229, 364, 727, 839, 1097, 1109
AsuII	TTCGAA	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	87, 423
BbsI	GAAGAC	2 cut(s)	66, 1046
Bbv12I	GWGCWC	2 cut(s)	87, 423
BccI	CCATC	2 cut(s)	145, 922
BciT130I	CCWGG	3 cut(s)	385, 843, 1006
BcnI	CCSGG	1 cut(s)	569
BfaI	CTAG	1 cut(s)	1132
BfoI	RGCGCY	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	4 cut(s)	385, 569, 843, 1006
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	755
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	4 cut(s)	385, 569, 843, 1006
BmsI	GCATC	2 cut(s)	22, 1078
BpiI	GAAGAC	2 cut(s)	66, 1046
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	5 cut(s)	129, 186, 396, 841, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	1069, 1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 700, 1042
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	3 cut(s)	385, 843, 1006
BseDI	CCNNGG	5 cut(s)	129, 186, 396, 841, 912
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	3 cut(s)	15, 700, 1042
BseMII	CTCAG	2 cut(s)	357, 599
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	2 cut(s)	40, 421
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	4 cut(s)	16, 37, 239, 287
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	191, 395
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	87, 423
BsiSI	CCGG	2 cut(s)	257, 569
BsiWI	CGTACG	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	15, 700, 1042
BsnI	GGCC	2 cut(s)	191, 395
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	87, 423
Bsp143I	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	5 cut(s)	16, 175, 239, 243, 287
BspANI	GGCC	2 cut(s)	191, 395
BspCNI	CTCAG	2 cut(s)	358, 598
BspFNI	CGCG	4 cut(s)	16, 37, 239, 287
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	4 cut(s)	128, 141, 237, 711
BspQI	GCTCTTC	1 cut(s)	545
BspT104I	TTCGAA	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	5 cut(s)	129, 186, 396, 841, 912
BssMI	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
BssT1I	CCWWGG	3 cut(s)	186, 396, 912
Bst2UI	CCWGG	3 cut(s)	385, 843, 1006
Bst4CI	ACNGT	1 cut(s)	1121
Bst6I	CTCTTC	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	5 cut(s)	241, 258, 393, 630, 838
BstDEI	CTNAG	2 cut(s)	366, 585
BstDSI	CCRYGG	1 cut(s)	396
BstENI	CCTNNNNNAGG	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	4 cut(s)	16, 37, 239, 287
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	37, 292, 557
BstKTI	GATC	6 cut(s)	136, 232, 237, 706, 1030, 1082
BstMBI	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 595
BstNI	CCWGG	3 cut(s)	385, 843, 1006
BstNSI	RCATGY	2 cut(s)	747, 862
BstSCI	CCNGG	4 cut(s)	383, 567, 841, 1004
BstUI	CGCG	4 cut(s)	16, 37, 239, 287
BstV2I	GAAGAC	2 cut(s)	66, 1046
BstX2I	RGATCY	3 cut(s)	133, 229, 703
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	3 cut(s)	133, 229, 703
BsuRI	GGCC	2 cut(s)	191, 395
BtgI	CCRYGG	1 cut(s)	396
BtrI	CACGTC	1 cut(s)	755
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	5 cut(s)	241, 258, 393, 630, 838
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	3 cut(s)	37, 292, 557
Cfr10I	RCCGGY	1 cut(s)	256
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	19, 28
CviAII	CATG	5 cut(s)	397, 744, 812, 859, 953
CviQI	GTAC	2 cut(s)	19, 28
DdeI	CTNAG	2 cut(s)	366, 585
DpnI	GATC	6 cut(s)	135, 231, 236, 705, 1029, 1081
DpnII	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
DriI	GACNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	545
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	545
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	2 cut(s)	85, 421
Eco130I	CCWWGG	3 cut(s)	186, 396, 912
Eco24I	GRGCYC	2 cut(s)	87, 423
Eco53kI	GAGCTC	2 cut(s)	85, 421
Eco57I	CTGAAG	3 cut(s)	644, 671, 887
EcoICRI	GAGCTC	2 cut(s)	85, 421
EcoNI	CCTNNNNNAGG	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	3 cut(s)	383, 841, 1004
EcoT14I	CCWWGG	3 cut(s)	186, 396, 912
EcoT38I	GRGCYC	2 cut(s)	87, 423
ErhI	CCWWGG	3 cut(s)	186, 396, 912
FaeI	CATG	5 cut(s)	400, 747, 815, 862, 956
FatI	CATG	5 cut(s)	396, 743, 811, 858, 952
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	2 cut(s)	87, 423
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	1132
GlaI	GCGC	3 cut(s)	36, 291, 556
GluI	GCNGC	1 cut(s)	288
GsaI	CCCAGC	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	191, 395
HapII	CCGG	2 cut(s)	257, 569
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	3 cut(s)	37, 292, 557
Hin1II	CATG	5 cut(s)	400, 747, 815, 862, 956
Hin6I	GCGC	3 cut(s)	35, 290, 555
HinP1I	GCGC	3 cut(s)	35, 290, 555
HincII	GTYRAC	2 cut(s)	180, 363
HindII	GTYRAC	2 cut(s)	180, 363
HindIII	AAGCTT	1 cut(s)	961
HinfI	GANTC	3 cut(s)	220, 475, 877
HpaII	CCGG	2 cut(s)	257, 569
HphI	GGTGA	7 cut(s)	166, 229, 364, 727, 839, 1097, 1109
Hpy166II	GTNNAC	3 cut(s)	180, 363, 830
Hpy188I	TCNGA	9 cut(s)	64, 133, 229, 234, 337, 619, 970, 1027, 1077
Hpy188III	TCNNGA	6 cut(s)	424, 479, 593, 812, 851, 865
Hpy8I	GTNNAC	3 cut(s)	180, 363, 830
Hpy99I	CGWCG	5 cut(s)	16, 116, 211, 229, 756
HpyAV	CCTTC	4 cut(s)	349, 502, 712, 862
HpyCH4III	ACNGT	1 cut(s)	1121
HpyCH4IV	ACGT	1 cut(s)	754
HpyCH4V	TGCA	2 cut(s)	698, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 595
HpyF3I	CTNAG	2 cut(s)	366, 585
HpySE526I	ACGT	1 cut(s)	754
Hsp92II	CATG	5 cut(s)	400, 747, 815, 862, 956
HspAI	GCGC	3 cut(s)	35, 290, 555
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	96, 317, 439
LweI	GCATC	2 cut(s)	22, 1078
MaeI	CTAG	1 cut(s)	1132
MaeII	ACGT	1 cut(s)	754
MalI	GATC	6 cut(s)	135, 231, 236, 705, 1029, 1081
MboI	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
MboII	GAAGA	5 cut(s)	66, 545, 562, 644, 1051
MflI	RGATCY	3 cut(s)	133, 229, 703
MhlI	GDGCHC	2 cut(s)	87, 423
MlsI	TGGCCA	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	395
MmeI	TCCRAC	4 cut(s)	87, 207, 582, 803
Mox20I	TGGCCA	1 cut(s)	395
MroNI	GCCGGC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	3 cut(s)	201, 465, 993
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	2 cut(s)	257, 569
MspR9I	CCNGG	4 cut(s)	385, 569, 843, 1006
MvaI	CCWGG	3 cut(s)	385, 843, 1006
MvnI	CGCG	4 cut(s)	16, 37, 239, 287
MwoI	GCNNNNNNNGC	2 cut(s)	13, 595
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	400, 747, 815, 862, 956
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	2 cut(s)	747, 862
NspV	TTCGAA	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	811
PciI	ACATGT	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	545
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	220, 475, 877
Pfl23II	CGTACG	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	331
PfoI	TCCNGGA	2 cut(s)	567, 1004
PkrI	GCNGC	1 cut(s)	289
PscI	ACATGT	1 cut(s)	858
Psp124BI	GAGCTC	2 cut(s)	87, 423
Psp6I	CCWGG	3 cut(s)	383, 841, 1004
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	3 cut(s)	383, 841, 1004
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	3 cut(s)	133, 229, 703
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	20, 29
RsaNI	GTAC	2 cut(s)	19, 28
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	87, 423
SalI	GTCGAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	201, 465, 993
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	6 cut(s)	133, 229, 234, 703, 1027, 1079
ScrFI	CCNGG	4 cut(s)	385, 569, 843, 1006
SduI	GDGCHC	2 cut(s)	87, 423
SfaNI	GCATC	2 cut(s)	22, 1078
SfuI	TTCGAA	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	5 cut(s)	16, 175, 239, 243, 287
SspMI	CTAG	1 cut(s)	1132
SstI	GAGCTC	2 cut(s)	87, 423
StyD4I	CCNGG	4 cut(s)	383, 567, 841, 1004
StyI	CCWWGG	3 cut(s)	186, 396, 912
TaaI	ACNGT	1 cut(s)	1121
TaiI	ACGT	1 cut(s)	757
TaqI	TCGA	6 cut(s)	44, 179, 278, 459, 751, 949
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	220, 475, 877
Tru1I	TTAA	3 cut(s)	201, 465, 993
Tru9I	TTAA	3 cut(s)	201, 465, 993
TscAI	CASTG	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	17, 593, 972
TspGWI	ACGGA	2 cut(s)	213, 1058
TspRI	CASTG	1 cut(s)	695
Tth111I	GACNNNGTC	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	698
XapI	RAATTY	5 cut(s)	280, 427, 580, 917, 1113
XceI	RCATGY	2 cut(s)	747, 862
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.