AT4G17615

calcineurin b-like protein 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9816278 .. 9819368
3091 bp
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UTR
Exon/CDS
Intron
AT4G17615.3

Sequence Viewer

Length: 642 bp
ATGGGCTGCTTCCACTCAAAGGCAGCAAAAGAATTTCGAGGACACGAAGACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGGAGGAGTTTCAACTTGCTTTGTTCAAAAGCCGGAAGAGGGAGAATATATTTGCTAATAGGATATTTGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTTTACGTTTAGGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAGAGGTCAAGCAAATGTTGATCGCGCTTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATAATACTCGATAAGACATTTGAAGATGCAGACGTGAATCAAGATGGAAAAATTGATAAATTAGAGTGGAGTGATTTCGTAAACAAAAATCCATCATTGCTTAAGATCATGACTCTTCCATATCTCAGGGATATTACGACAACGTTTCCGAGTTTTGTCTTCCATTCGGAGGTCGATGAGATTGCCACATGA
Functional Annotation

Protein Analysis

213

Amino Acids

24.55

Weight (kDa)

4.74

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 107 - 172 7.4e-09 EF-hand domain pair
EF-hand_5 PF13202 153 - 177 2.8e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 404
AclI AACGTT 1 cut(s) 593
AcsI RAATTY 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 19, 199, 619
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 6 cut(s) 98, 118, 173, 187, 374, 473
AhdI GACNNNNNGTC 1 cut(s) 383
AjiI CACGTC 1 cut(s) 484
AluBI AGCT 3 cut(s) 61, 77, 112
AluI AGCT 3 cut(s) 61, 77, 112
Alw26I GTCTC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 6, 23
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 1 cut(s) 406
BbsI GAAGAC 3 cut(s) 54, 324, 601
BbvI GCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 140, 488, 550
BcgI CGANNNNNNTGC 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 314
BfrI CTTAAG 1 cut(s) 551
BisI GCNGC 2 cut(s) 7, 24
BlsI GCNGC 2 cut(s) 8, 25
BmeRI GACNNNNNGTC 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 484
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 3 cut(s) 54, 324, 601
Bsa29I ATCGAT 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 199, 619
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 545
BseCI ATCGAT 1 cut(s) 261
BseLI CCNNNNNNNGG 3 cut(s) 19, 199, 619
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 60, 589
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 404
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 19, 199, 619
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 284
Bsp143I GATC 3 cut(s) 281, 399, 555
BspCNI CTCAG 2 cut(s) 61, 588
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 404
BspHI TCATGA 1 cut(s) 558
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 1 cut(s) 435
BssMI GATC 3 cut(s) 281, 399, 555
Bst6I CTCTTC 2 cut(s) 191, 570
BstAFI CTTAAG 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 69, 575
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 284, 402, 558
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 281, 399, 555
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 3 cut(s) 54, 324, 601
Bsu15I ATCGAT 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 261
BtrI CACGTC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 63
CciI TCATGA 1 cut(s) 558
CfoI GCGC 1 cut(s) 406
ClaI ATCGAT 1 cut(s) 261
CviAII CATG 3 cut(s) 352, 559, 639
CviJI RGCY 7 cut(s) 6, 61, 77, 112, 192, 343, 434
CviKI_1 RGCY 7 cut(s) 6, 61, 77, 112, 192, 343, 434
DdeI CTNAG 2 cut(s) 69, 575
DpnI GATC 3 cut(s) 283, 401, 557
DpnII GATC 3 cut(s) 281, 399, 555
DriI GACNNNNNGTC 1 cut(s) 383
Eam1104I CTCTTC 2 cut(s) 191, 570
Eam1105I GACNNNNNGTC 1 cut(s) 383
EarI CTCTTC 2 cut(s) 191, 570
FaeI CATG 3 cut(s) 355, 562, 642
FaiI YATR 8 cut(s) 125, 209, 233, 353, 446, 560, 571, 640
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 351, 558, 638
Fnu4HI GCNGC 2 cut(s) 7, 24
Fsp4HI GCNGC 2 cut(s) 7, 24
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 405
GluI GCNGC 2 cut(s) 7, 24
HapII CCGG 1 cut(s) 193
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 355, 562, 642
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 4 cut(s) 255, 416, 487, 562
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 5 cut(s) 70, 153, 421, 600, 619
Hpy188III TCNNGA 4 cut(s) 118, 314, 491, 559
Hpy8I GTNNAC 1 cut(s) 532
HpyCH4IV ACGT 3 cut(s) 335, 483, 593
HpyCH4V TGCA 2 cut(s) 360, 479
HpyF3I CTNAG 2 cut(s) 69, 575
HpySE526I ACGT 3 cut(s) 335, 483, 593
Hsp92II CATG 3 cut(s) 355, 562, 642
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 3 cut(s) 281, 399, 555
LpnPI CCDG 4 cut(s) 66, 206, 416, 562
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 314
MaeII ACGT 3 cut(s) 335, 483, 593
MaeIII GTNAC 1 cut(s) 365
MalI GATC 3 cut(s) 283, 401, 557
MboI GATC 3 cut(s) 281, 399, 555
MboII GAAGA 6 cut(s) 59, 208, 329, 485, 557, 601
MluCI AATT 3 cut(s) 32, 501, 509
MlyI GAGTC 2 cut(s) 264, 556
MnlI CCTC 7 cut(s) 32, 76, 85, 157, 192, 376, 613
MseI TTAA 4 cut(s) 57, 156, 243, 552
MslI CAYNNNNRTG 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 404
NdeII GATC 3 cut(s) 281, 399, 555
NlaIII CATG 3 cut(s) 355, 562, 642
PagI TCATGA 1 cut(s) 558
PfeI GAWTC 2 cut(s) 416, 487
PkrI GCNGC 2 cut(s) 8, 25
PleI GAGTC 2 cut(s) 263, 556
PpsI GAGTC 2 cut(s) 263, 556
Psp1406I AACGTT 1 cut(s) 593
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 4 cut(s) 57, 156, 243, 552
SatI GCNGC 2 cut(s) 7, 24
Sau3AI GATC 3 cut(s) 281, 399, 555
SchI GAGTC 2 cut(s) 264, 556
SetI ASST 9 cut(s) 63, 79, 96, 114, 338, 387, 486, 596, 624
SfaNI GCATC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 3 cut(s) 32, 501, 509
SspMI CTAG 1 cut(s) 314
TaiI ACGT 3 cut(s) 338, 486, 596
TaqI TCGA 4 cut(s) 37, 261, 459, 624
TasI AATT 3 cut(s) 32, 501, 509
TfiI GAWTC 2 cut(s) 416, 487
Tru1I TTAA 4 cut(s) 57, 156, 243, 552
Tru9I TTAA 4 cut(s) 57, 156, 243, 552
TseI GCWGC 2 cut(s) 6, 23
TspDTI ATGAA 2 cut(s) 440, 453
Vha464I CTTAAG 1 cut(s) 551
XapI RAATTY 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 313
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.