Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Forward (+)

7327514 .. 7331099

Gene Structure 3586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGAGGGCTGGTTTCTTTAGGGAGGCGATTGCATACCTATGATGGGCCAAGTGAGAGCTTGAAGATGAAGATGGCGGAGTTGGAGAAGATGAGGAAGAGCAAGAGCTTCAAGAAACGAAAGAACAGAGTGTTCGTTGAGGTTCCGGAGCCTTTGACGTACTTAGACACAGCCACCATGCCCATGTATCTCGCCGCTGCCGGAATAGCTCTCTTCGCTAAGCTCCTCATGATGTATGATGACTCAAGGTCGCAAGAATTGATTGAACGCAAGATAAGGAATGCTCCTGCTGATCAAGGCACTGTTCGGATGCTCAGTCGTGAGGAATGGGAAGAAATTCGAGCACAGAGGCCGAGGACTCCGTTTGAATCCAAACTTGCTCGTCCAAATGCCCGTCTAAGAACTGGAGAACCAGTGCGCATGGAGGATTTGAAAGATTGGACAATTGATGTGTTCACGGATGCATTTGCTCGGGCTGAAGAAAGTGTTAGACATGGTTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

168

Amino Acids

19.51

Weight (kDa)

9.83

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	2 cut(s)	77, 195
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	64, 112, 266, 368, 433
AhdI	GACNNNNNGTC	1 cut(s)	247
AluBI	AGCT	4 cut(s)	60, 108, 209, 223
AluI	AGCT	4 cut(s)	60, 108, 209, 223
Alw21I	GWGCWC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	471
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	2 cut(s)	47, 350
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	38, 67
BclI	TGATCA	1 cut(s)	292
BisI	GCNGC	2 cut(s)	195, 198
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	196, 199
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	3 cut(s)	144, 150, 499
BmsI	GCATC	2 cut(s)	300, 451
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	409, 413
BseAI	TCCGGA	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	315, 466
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	409, 413
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	49, 352
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	146, 201
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	49, 352
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	77, 195
BspANI	GGCC	2 cut(s)	49, 352
BspCNI	CTCAG	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	144, 150, 499
BspQI	GCTCTTC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	409, 413
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	92, 218
BstDEI	CTNAG	4 cut(s)	163, 219, 314, 398
BstF5I	GGATG	2 cut(s)	315, 466
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 215
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	49, 352
BtsCI	GGATG	2 cut(s)	315, 466
BtsIMutI	CAGTG	2 cut(s)	300, 420
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	178, 184, 229, 421, 494
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	163, 219, 314, 398
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	92, 218
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	2 cut(s)	92, 218
EciI	GGCGGA	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	466
FaeI	CATG	5 cut(s)	181, 187, 232, 424, 497
FaiI	YATR	8 cut(s)	36, 42, 179, 185, 230, 237, 422, 495
FatI	CATG	5 cut(s)	177, 183, 228, 420, 493
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	195, 198
FokI	GGATG	2 cut(s)	322, 473
Fsp4HI	GCNGC	2 cut(s)	195, 198
FspAI	RTGCGCAY	1 cut(s)	419
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	2 cut(s)	195, 198
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	49, 352
HapII	CCGG	2 cut(s)	146, 201
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	181, 187, 232, 424, 497
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	242, 358, 368
HpaII	CCGG	2 cut(s)	146, 201
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	4 cut(s)	112, 146, 229, 320
Hpy8I	GTNNAC	1 cut(s)	456
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	34, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 215
HpyF3I	CTNAG	4 cut(s)	163, 219, 314, 398
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	5 cut(s)	181, 187, 232, 424, 497
HspAI	GCGC	1 cut(s)	418
Kpn2I	TCCGGA	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	3 cut(s)	148, 228, 289
LpnPI	CCDG	5 cut(s)	159, 214, 300, 390, 426
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	300, 451
MaeII	ACGT	1 cut(s)	158
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	7 cut(s)	76, 82, 100, 109, 205, 344, 491
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	3 cut(s)	257, 336, 444
MlyI	GAGTC	2 cut(s)	236, 352
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	18, 87, 133, 236, 316, 342, 348, 418
Mph1103I	ATGCAT	1 cut(s)	466
MroI	TCCGGA	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	39, 182
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	146, 201
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	206, 215
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	5 cut(s)	181, 187, 232, 424, 497
NlaIV	GGNNCC	3 cut(s)	144, 150, 499
NmeAIII	GCCGAG	1 cut(s)	378
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	466
PagI	TCATGA	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	196, 199
PleI	GAGTC	2 cut(s)	236, 352
PpsI	GAGTC	2 cut(s)	236, 352
PspN4I	GGNNCC	3 cut(s)	144, 150, 499
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	39, 182
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	2 cut(s)	195, 198
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	236, 352
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	8 cut(s)	41, 62, 110, 144, 161, 211, 225, 251
SfaNI	GCATC	2 cut(s)	300, 451
SmiMI	CAYNNNNRTG	2 cut(s)	39, 182
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	3 cut(s)	257, 336, 444
SsiI	CCGC	2 cut(s)	77, 195
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	340
TasI	AATT	3 cut(s)	257, 336, 444
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	2 cut(s)	307, 420
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	2 cut(s)	351, 473
TspRI	CASTG	2 cut(s)	307, 420
XapI	RAATTY	1 cut(s)	336
XmnI	GAANNNNTTC	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.