Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Reverse (-)

32553344 .. 32556326

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTGACTGGCAAGAGACTCCAGTTGCAGGTTGGAGCTATTGTTGGACTTGATCAATATGTCAACTACTTCAAAATTCAGCTGAGGATACAACAGAGGATTAAAAGCGCAGAGCTCAGGATGTTAACCAAGGAGCAAGAAAATGAACTTCCGAACTTTACACCATTCATTCCATTGATGTCTCCCGTGTTCGGGACTGATTATGAAAAGAACAATTTCAAAAGTATTAATGAAGTTGATCCCATAGTAGCATCCTTCTCCGCAGGAGCAGTTGGACTGATCTCAGCACTGATGATGGTTGAAATAATAAGCAAAACACTGCAGGAGCATCAGAGATGTAAATATTGTCTTGGAACTGCTTATGGCTCATCTTCTGATGCAATGACTATAATCCAACAAAGATCTCCTGTTGTTAAGGGGATGATGATTGAATTTGCTAAGAACTCAGTTGATTATGTTACTGCCAGCGCCCAGCGGAAAGAAGCATGTTATTGTGTTTTCAAGCTTAAACTTTCAGGGGTGGCAGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

8.86

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AciI	CCGC	2 cut(s)	261, 475
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	75, 431
AfiI	CCNNNNNNNGG	3 cut(s)	28, 191, 192
AgsI	TTSAA	5 cut(s)	73, 220, 302, 431, 502
AluBI	AGCT	4 cut(s)	38, 82, 115, 505
AluI	AGCT	4 cut(s)	38, 82, 115, 505
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	10, 186
AlwI	GGATC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	75, 431
AseI	ATTAAT	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	110, 470
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	10, 186
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	401
BmsI	GCATC	3 cut(s)	260, 337, 367
BpmI	CTGGAG	1 cut(s)	5
Bpu10I	CCTNAGC	2 cut(s)	83, 116
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 191, 192
Bse1I	ACTGG	2 cut(s)	13, 22
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	126, 251, 426
BseLI	CCNNNNNNNGG	3 cut(s)	28, 191, 192
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	4 cut(s)	74, 130, 297, 459
BseNI	ACTGG	2 cut(s)	13, 22
BseYI	CCCAGC	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	28, 191, 192
BsmAI	GTCTC	2 cut(s)	10, 186
BsmFI	GGGAC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	52, 238, 279, 401
BspACI	CCGC	2 cut(s)	261, 475
BspCNI	CTCAG	4 cut(s)	75, 129, 296, 458
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	13, 22
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	52, 238, 279, 401
BssT1I	CCWWGG	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	5 cut(s)	83, 116, 283, 438, 445
BstF5I	GGATG	3 cut(s)	126, 251, 426
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	110, 470
BstKTI	GATC	4 cut(s)	55, 241, 282, 404
BstMAI	GTCTC	2 cut(s)	10, 186
BstMBI	GATC	4 cut(s)	52, 238, 279, 401
BstNSI	RCATGY	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	126, 251, 426
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	287, 317
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	2 cut(s)	110, 470
CviAII	CATG	1 cut(s)	486
CviJI	RGCY	5 cut(s)	38, 82, 115, 366, 505
CviKI_1	RGCY	5 cut(s)	38, 82, 115, 366, 505
DdeI	CTNAG	5 cut(s)	83, 116, 283, 438, 445
DpnI	GATC	4 cut(s)	54, 240, 281, 403
DpnII	GATC	4 cut(s)	52, 238, 279, 401
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	489
FaiI	YATR	7 cut(s)	60, 204, 245, 363, 389, 456, 487
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	1 cut(s)	485
FbaI	TGATCA	1 cut(s)	52
FokI	GGATG	3 cut(s)	133, 238, 433
FriOI	GRGCYC	1 cut(s)	117
GlaI	GCGC	2 cut(s)	109, 469
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	471
HhaI	GCGC	2 cut(s)	110, 470
Hin1II	CATG	1 cut(s)	489
Hin6I	GCGC	2 cut(s)	108, 468
HinP1I	GCGC	2 cut(s)	108, 468
HincII	GTYRAC	3 cut(s)	6, 64, 126
HindII	GTYRAC	3 cut(s)	6, 64, 126
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	18
HpaI	GTTAAC	1 cut(s)	126
Hpy166II	GTNNAC	3 cut(s)	6, 64, 126
Hpy188I	TCNGA	3 cut(s)	153, 333, 376
Hpy188III	TCNNGA	2 cut(s)	118, 193
Hpy8I	GTNNAC	3 cut(s)	6, 64, 126
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	28, 322, 380
HpyF3I	CTNAG	5 cut(s)	83, 116, 283, 438, 445
Hsp92II	CATG	1 cut(s)	489
HspAI	GCGC	2 cut(s)	108, 468
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	52, 238, 279, 401
LmnI	GCTCC	4 cut(s)	35, 133, 266, 325
LpnPI	CCDG	9 cut(s)	14, 35, 103, 249, 308, 420, 478, 485, 501
LweI	GCATC	3 cut(s)	260, 337, 367
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	4 cut(s)	54, 240, 281, 403
MboI	GATC	4 cut(s)	52, 238, 279, 401
MboII	GAAGA	1 cut(s)	363
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	75, 214, 431, 529
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	4 cut(s)	13, 25, 253, 418
MnlI	CCTC	2 cut(s)	78, 90
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	6 cut(s)	102, 125, 228, 414, 507, 532
MspA1I	CMGCKG	2 cut(s)	82, 475
NdeII	GATC	4 cut(s)	52, 238, 279, 401
NlaIII	CATG	1 cut(s)	489
NspI	RCATGY	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	6 cut(s)	102, 125, 228, 414, 507, 532
Sau3AI	GATC	4 cut(s)	52, 238, 279, 401
SchI	GAGTC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	33, 40, 84, 117, 507
SfaNI	GCATC	3 cut(s)	260, 337, 367
SfcI	CTRYAG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	75, 214, 431, 529
SsiI	CCGC	2 cut(s)	261, 475
SspI	AATATT	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	129
TasI	AATT	4 cut(s)	75, 214, 431, 529
Tru1I	TTAA	6 cut(s)	102, 125, 228, 414, 507, 532
Tru9I	TTAA	6 cut(s)	102, 125, 228, 414, 507, 532
TscAI	CASTG	2 cut(s)	294, 324
TspDTI	ATGAA	4 cut(s)	157, 159, 219, 246
TspRI	CASTG	2 cut(s)	294, 324
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	2 cut(s)	75, 431
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.