Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Reverse (-)

22362856 .. 22363377

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATGGAACAGTTCGCTCTTTAGCTTTTTCCAATGATGGGAAGCAACTATTGAGCTCTGGTGGAGATGGACAGGTTTACCAGTGGGATCTGAGAACAGGGGCCTGCTTCCATAAAATGGTTGACGAAGGTTGTATCAATGGTACAGCCCTTTGTACATCTCCAAATGGATCCTTGTTTGCTGCTGGTTCAGACAGTGGGATTGTTAATATTTATAATAGAGATGAGGTTTTAGGAGGCAAAAGAAAACCAATCAAGACTATCGAGAATCTTACAACCAAAGTAGATTTTATGAAGTTCAATAATGATGCTCAAATTTTAGCTATTTGTTCAAGCATGAAGAAGAACAGCTTAAAGTTGGTACATGTTCCATCATACACTGTATTTTCCAACTGGCCTCCTCAAAGGCCGGTCCTGCATTATCTTCGCTGTTTGGATTTTAGTCCCGGTGGAGGTTTCATGGCTGTGGGCAATGCTGCTGGAAAAGTGTTGTACAAGTTGCATCATTATCATCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

9.13

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	2 - 111	1.1e-11	Prp19 WD40 domain
WD40	PF00400	3 - 30	8.9e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	3 - 155	1.1e-14	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	3 - 72	3e-06	G protein beta WD-40 repeat protein
WDR55	PF24796	4 - 112	1.2e-07	WDR55
Beta-prop_EML_2	PF23414	7 - 165	8.5e-12	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	118
AclWI	GGATC	3 cut(s)	96, 165, 178
AcsI	RAATTY	1 cut(s)	315
AfaI	GTAC	4 cut(s)	145, 157, 363, 494
AfiI	CCNNNNNNNGG	3 cut(s)	39, 118, 452
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	301, 333
AluBI	AGCT	4 cut(s)	26, 57, 323, 351
AluI	AGCT	4 cut(s)	26, 57, 323, 351
Alw21I	GWGCWC	1 cut(s)	59
AlwI	GGATC	3 cut(s)	96, 165, 178
AoxI	GGCC	3 cut(s)	102, 395, 407
ApeKI	GCWGC	2 cut(s)	182, 476
ApoI	RAATTY	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	102, 412
AsuC2I	CCSGG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	169, 463
BccI	CCATC	3 cut(s)	32, 62, 379
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BcnI	CCSGG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	183, 477
BlsI	GCNGC	2 cut(s)	184, 478
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	102, 412
BmiI	GGNNCC	2 cut(s)	103, 172
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	298, 511
BpuMI	CCSGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 118, 452
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	82, 398
Bse3DI	GCAATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	39, 118, 452
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	82, 398
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	169, 463
BshFI	GGCC	3 cut(s)	104, 397, 409
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	410, 447
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	39, 118, 452
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	3 cut(s)	104, 397, 409
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp1407I	TGTACA	2 cut(s)	155, 492
Bsp143I	GATC	2 cut(s)	88, 170
BspANI	GGCC	3 cut(s)	104, 397, 409
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	103, 172
BspPI	GGATC	3 cut(s)	96, 165, 178
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	409
BsrGI	TGTACA	2 cut(s)	155, 492
BsrI	ACTGG	2 cut(s)	82, 398
BssAI	RCCGGY	1 cut(s)	409
BssMI	GATC	2 cut(s)	88, 170
Bst4CI	ACNGT	3 cut(s)	13, 197, 382
BstAUI	TGTACA	2 cut(s)	155, 492
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	91, 173
BstMBI	GATC	2 cut(s)	88, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	169, 463
BstX2I	RGATCY	2 cut(s)	88, 170
BstYI	RGATCY	2 cut(s)	88, 170
BsuRI	GGCC	3 cut(s)	104, 397, 409
BtsIMutI	CAGTG	3 cut(s)	89, 202, 378
Cac8I	GCNNGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	102, 412
Csp6I	GTAC	4 cut(s)	144, 156, 362, 493
CviAII	CATG	4 cut(s)	337, 365, 460, 515
CviJI	RGCY	9 cut(s)	26, 57, 104, 149, 323, 351, 397, 409, 464
CviKI_1	RGCY	9 cut(s)	26, 57, 104, 149, 323, 351, 397, 409, 464
CviQI	GTAC	4 cut(s)	144, 156, 362, 493
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	2 cut(s)	90, 172
DpnII	GATC	2 cut(s)	88, 170
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	4 cut(s)	340, 368, 463, 518
FaiI	YATR	9 cut(s)	114, 216, 293, 338, 366, 376, 461, 516, 520
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	336, 364, 459, 514
Fnu4HI	GCNGC	2 cut(s)	183, 477
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	183, 477
GluI	GCNGC	2 cut(s)	183, 477
HaeIII	GGCC	3 cut(s)	104, 397, 409
HapII	CCGG	2 cut(s)	410, 447
Hin1II	CATG	4 cut(s)	340, 368, 463, 518
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	410, 447
Hpy166II	GTNNAC	2 cut(s)	79, 124
Hpy188I	TCNGA	2 cut(s)	93, 193
Hpy188III	TCNNGA	2 cut(s)	256, 265
Hpy8I	GTNNAC	2 cut(s)	79, 124
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	3 cut(s)	13, 197, 382
HpyCH4V	TGCA	3 cut(s)	418, 502, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	340, 368, 463, 518
Kzo9I	GATC	2 cut(s)	88, 170
Lsp1109I	GCAGC	2 cut(s)	169, 463
LweI	GCATC	2 cut(s)	298, 511
MalI	GATC	2 cut(s)	90, 172
MboI	GATC	2 cut(s)	88, 170
MboII	GAAGA	3 cut(s)	352, 355, 416
MflI	RGATCY	2 cut(s)	88, 170
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	5 cut(s)	220, 230, 408, 411, 446
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	2 cut(s)	207, 353
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	2 cut(s)	410, 447
MspR9I	CCNGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	2 cut(s)	88, 170
NlaIII	CATG	4 cut(s)	340, 368, 463, 518
NlaIV	GGNNCC	2 cut(s)	103, 172
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	368
PciI	ACATGT	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	184, 478
PscI	ACATGT	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	103, 172
PspPI	GGNCC	2 cut(s)	102, 412
PsuI	RGATCY	2 cut(s)	88, 170
RsaI	GTAC	4 cut(s)	145, 157, 363, 494
RsaNI	GTAC	4 cut(s)	144, 156, 362, 493
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	207, 353
SatI	GCNGC	2 cut(s)	183, 477
Sau3AI	GATC	2 cut(s)	88, 170
Sau96I	GGNCC	2 cut(s)	102, 412
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	8 cut(s)	28, 59, 78, 133, 231, 325, 353, 457
SfaNI	GCATC	2 cut(s)	298, 511
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	315
SspI	AATATT	1 cut(s)	211
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	13, 197, 382
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	315
TatI	WGTACW	2 cut(s)	155, 492
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	207, 353
Tru9I	TTAA	2 cut(s)	207, 353
TscAI	CASTG	3 cut(s)	89, 202, 385
TseI	GCWGC	2 cut(s)	182, 476
TspDTI	ATGAA	4 cut(s)	17, 308, 353, 448
TspRI	CASTG	3 cut(s)	89, 202, 385
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	315
XceI	RCATGY	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.