Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Reverse (-)

19053774 .. 19055533

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGTTTAATATCACAAAACATTCCCGGCCACAAGACTAAGAGGATGGATGCTGATGAACCTTCATTTCTGCAAGGGAATGAAGACAGCGGTGATGGAAAAGAATCTAATTTAGAGATCATGAGGATGACAAAGAGAAAGAAAGCACGCAACGGAGAGGATGAGAAGGTGGCAGTTGAGCAAGAAAAGGAAACAAAGAAGCTGGAAAACTTTTTGTTTGGATCAATCTATTCCCCAGGTGAGTTTGGGAAGGAGGATGAGGAAGAAGCTGTAGACCAGGTCGATAAAGGCTCTGCTTTATTCTTTGTTGACCGTTCTGCAAGTATTGTGCACCCTGGTAATGATGATGATGCAAAATTCTCAGAAGAGGAGACTAAGCAAAGGAAACCTGTGTGGATGGATGAGGAAGAGGAAAAGGCCAACATTAATATCGCTAGGGTTAATAGATTGAGGAAGCTGAGGAAGGAAGAGGATGAGAATTTTATTTCTGCTTCTGAGTATGTTTTACGATTAAGGGCTCAGCATGCTAAGCTGAATCCAGGTACAGAATGGTCTCAATTTGATTCACAGTCGAGGTACAATAGATACTCTGATGATGAATCCTCCGATGAAGAAAATGGCTTAGTAGTGCCCCGTGGCTACAAGGAGGTTGGAGCTGTTGATGATCTCCTTCGTACAAATGAGGACCTTGTTGTGAAGAGTGGTGGAAAGTTGCTGCCTGGACTTCTTGAATATTCAACACTTGTGGATGCAAATGCAGAGGAACCTTGTAATGGTCCAATTAATTCGGTGCAATTTCATAGAAATGCTCAGTTGCTTCTTGCTGCTGGATTGGATCGAACGCTTAGATTTTTTCAGATTGATGGCAAACGGAATACTAAAATTGAAAGCATTTTCATTGATGATTGTCCCATACGGAAGGCAGCTTTCTTGCCTGATGGTTCTCAGGTTATTATAGCTGGAAGGAGGAAATTCTTTTATAGTTTTGATTTAGTAAAGGCGAAAGTTGATAAAATAGGCCCCCTGGTTGGTAGAGAAGAGAAAAGCTTGGAAGTTTTTGAGGTTTCCCCTGATTCAAGTACGATCGCGTTCGTGGGAATGGTTATAAGATTACTAAATCCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

375

Amino Acids

42.35

Weight (kDa)

5.02

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1106
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	1088
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	229, 843
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	3 cut(s)	356, 478, 971
AfaI	GTAC	4 cut(s)	544, 578, 676, 1081
AfiI	CCNNNNNNNGG	2 cut(s)	773, 1028
AgsI	TTSAA	4 cut(s)	731, 738, 887, 1077
AjnI	CCWGG	6 cut(s)	235, 276, 334, 538, 718, 1023
AluBI	AGCT	8 cut(s)	202, 269, 457, 532, 656, 926, 959, 1047
AluI	AGCT	8 cut(s)	202, 269, 457, 532, 656, 926, 959, 1047
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	365, 558
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	229, 843
AoxI	GGCC	3 cut(s)	28, 417, 1018
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	715, 824, 923
ApoI	RAATTY	3 cut(s)	356, 478, 971
AseI	ATTAAT	2 cut(s)	426, 783
AspS9I	GGNCC	3 cut(s)	685, 776, 1019
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	104, 251
AvaII	GGWCC	2 cut(s)	685, 776
BaeGI	GKGCMC	2 cut(s)	333, 633
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	702, 811, 935
BccI	CCATC	5 cut(s)	40, 89, 391, 857, 932
BciT130I	CCWGG	6 cut(s)	237, 278, 336, 540, 720, 1025
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	365, 558
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	716, 825, 924
BlpI	GCTNAGC	2 cut(s)	519, 528
BlsI	GCNGC	3 cut(s)	717, 826, 925
Bme1390I	CCNGG	7 cut(s)	27, 237, 278, 336, 540, 720, 1025
Bme18I	GGWCC	2 cut(s)	685, 776
BmgT120I	GGNCC	3 cut(s)	685, 776, 1019
BmiI	GGNNCC	2 cut(s)	765, 1021
BmrFI	CCNGG	7 cut(s)	27, 237, 278, 336, 540, 720, 1025
BmsI	GCATC	3 cut(s)	40, 340, 739
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	2 cut(s)	519, 528
BpuMI	CCSGG	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	4 cut(s)	235, 334, 634, 1023
Bsc4I	CCNNNNNNNGG	2 cut(s)	773, 1028
BseBI	CCWGG	6 cut(s)	237, 278, 336, 540, 720, 1025
BseDI	CCNNGG	4 cut(s)	235, 334, 634, 1023
BseGI	GGATG	9 cut(s)	51, 55, 132, 166, 262, 402, 406, 478, 754
BseLI	CCNNNNNNNGG	2 cut(s)	773, 1028
BseMII	CTCAG	6 cut(s)	375, 449, 486, 533, 824, 959
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	2 cut(s)	333, 633
BseXI	GCAGC	3 cut(s)	702, 811, 935
Bsh1236I	CGCG	1 cut(s)	1088
Bsh1285I	CGRYCG	1 cut(s)	1086
BshFI	GGCC	3 cut(s)	30, 419, 1020
BsiEI	CGRYCG	1 cut(s)	1086
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	2 cut(s)	773, 1028
BsmAI	GTCTC	2 cut(s)	365, 558
BsmFI	GGGAC	1 cut(s)	894
BsnI	GGCC	3 cut(s)	30, 419, 1020
Bso31I	GGTCTC	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	333, 520, 633
Bsp143I	GATC	5 cut(s)	117, 221, 664, 835, 1083
Bsp1720I	GCTNAGC	2 cut(s)	519, 528
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	30, 419, 1020
BspCNI	CTCAG	6 cut(s)	374, 450, 487, 532, 823, 958
BspFNI	CGCG	1 cut(s)	1088
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	765, 1021
BspPI	GGATC	2 cut(s)	229, 843
BspTNI	GGTCTC	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	235, 334, 634, 1023
BssMI	GATC	5 cut(s)	117, 221, 664, 835, 1083
Bst2UI	CCWGG	6 cut(s)	237, 278, 336, 540, 720, 1025
Bst4CI	ACNGT	2 cut(s)	314, 570
Bst6I	CTCTTC	5 cut(s)	360, 402, 462, 692, 1032
BstC8I	GCNNGC	2 cut(s)	148, 525
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	9 cut(s)	51, 55, 132, 166, 262, 402, 406, 478, 754
BstFNI	CGCG	1 cut(s)	1088
BstKTI	GATC	5 cut(s)	120, 224, 667, 838, 1086
BstMAI	GTCTC	2 cut(s)	365, 558
BstMBI	GATC	5 cut(s)	117, 221, 664, 835, 1083
BstMCI	CGRYCG	1 cut(s)	1086
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 529
BstNI	CCWGG	6 cut(s)	237, 278, 336, 540, 720, 1025
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	7 cut(s)	25, 235, 276, 334, 538, 718, 1023
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	2 cut(s)	333, 633
BstUI	CGCG	1 cut(s)	1088
BstV1I	GCAGC	3 cut(s)	702, 811, 935
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	30, 419, 1020
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	9 cut(s)	51, 55, 132, 166, 262, 402, 406, 478, 754
Cac8I	GCNNGC	2 cut(s)	148, 525
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	685, 776, 1019
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	543, 577, 675, 1080
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	2 cut(s)	121, 524
CviQI	GTAC	4 cut(s)	543, 577, 675, 1080
DpnI	GATC	5 cut(s)	119, 223, 666, 837, 1085
DpnII	GATC	5 cut(s)	117, 221, 664, 835, 1083
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	5 cut(s)	360, 402, 462, 692, 1032
EarI	CTCTTC	5 cut(s)	360, 402, 462, 692, 1032
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	2 cut(s)	685, 776
EcoO109I	RGGNCCY	2 cut(s)	685, 1019
EcoRII	CCWGG	6 cut(s)	235, 276, 334, 538, 718, 1023
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	2 cut(s)	124, 527
FaiI	YATR	8 cut(s)	122, 501, 525, 801, 914, 956, 981, 1106
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	2 cut(s)	120, 523
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	716, 825, 924
FokI	GGATG	9 cut(s)	58, 62, 139, 173, 269, 409, 413, 485, 761
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	3 cut(s)	716, 825, 924
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	3 cut(s)	716, 825, 924
HaeIII	GGCC	3 cut(s)	30, 419, 1020
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	124, 527
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	1045
HinfI	GANTC	5 cut(s)	104, 535, 563, 599, 1073
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	104, 251
Hpy166II	GTNNAC	3 cut(s)	274, 310, 331
Hpy188I	TCNGA	5 cut(s)	364, 496, 592, 607, 858
Hpy188III	TCNNGA	2 cut(s)	121, 728
Hpy8I	GTNNAC	3 cut(s)	274, 310, 331
HpyAV	CCTTC	7 cut(s)	72, 160, 244, 457, 680, 913, 957
HpyCH4III	ACNGT	2 cut(s)	314, 570
HpyCH4V	TGCA	7 cut(s)	73, 320, 331, 353, 752, 758, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 529
Hsp92II	CATG	2 cut(s)	124, 527
Kzo9I	GATC	5 cut(s)	117, 221, 664, 835, 1083
LmnI	GCTCC	1 cut(s)	653
Lsp1109I	GCAGC	3 cut(s)	702, 811, 935
LweI	GCATC	3 cut(s)	40, 340, 739
MabI	ACCWGGT	1 cut(s)	276
MaeI	CTAG	1 cut(s)	435
MalI	GATC	5 cut(s)	119, 223, 666, 837, 1085
MboI	GATC	5 cut(s)	117, 221, 664, 835, 1083
MboII	GAAGA	8 cut(s)	95, 275, 377, 419, 479, 623, 709, 1049
MhlI	GDGCHC	3 cut(s)	333, 520, 633
MluCI	AATT	9 cut(s)	109, 356, 478, 557, 780, 784, 794, 882, 971
MmeI	TCCRAC	1 cut(s)	631
MseI	TTAA	5 cut(s)	8, 426, 441, 512, 783
MslI	CAYNNNNRTG	2 cut(s)	125, 804
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	7 cut(s)	27, 237, 278, 336, 540, 720, 1025
MvaI	CCWGG	6 cut(s)	237, 278, 336, 540, 720, 1025
MvnI	CGCG	1 cut(s)	1088
MwoI	GCNNNNNNNGC	2 cut(s)	524, 529
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	5 cut(s)	117, 221, 664, 835, 1083
NlaIII	CATG	2 cut(s)	124, 527
NlaIV	GGNNCC	2 cut(s)	765, 1021
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	120
PfeI	GAWTC	5 cut(s)	104, 535, 563, 599, 1073
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	717, 826, 925
Ple19I	CGATCG	1 cut(s)	1086
PpuMI	RGGWCCY	1 cut(s)	685
PshBI	ATTAAT	2 cut(s)	426, 783
PsiI	TTATAA	1 cut(s)	1106
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	6 cut(s)	235, 276, 334, 538, 718, 1023
PspGI	CCWGG	6 cut(s)	235, 276, 334, 538, 718, 1023
PspN4I	GGNNCC	2 cut(s)	765, 1021
PspPI	GGNCC	3 cut(s)	685, 776, 1019
PspPPI	RGGWCCY	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	1086
RsaI	GTAC	4 cut(s)	544, 578, 676, 1081
RsaNI	GTAC	4 cut(s)	543, 577, 675, 1080
RseI	CAYNNNNRTG	2 cut(s)	125, 804
SaqAI	TTAA	5 cut(s)	8, 426, 441, 512, 783
SatI	GCNGC	3 cut(s)	716, 825, 924
Sau3AI	GATC	5 cut(s)	117, 221, 664, 835, 1083
Sau96I	GGNCC	3 cut(s)	685, 776, 1019
ScrFI	CCNGG	7 cut(s)	27, 237, 278, 336, 540, 720, 1025
SduI	GDGCHC	3 cut(s)	333, 520, 633
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	3 cut(s)	40, 340, 739
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	2 cut(s)	685, 776
SmiMI	CAYNNNNRTG	2 cut(s)	125, 804
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	9 cut(s)	109, 356, 478, 557, 780, 784, 794, 882, 971
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	7 cut(s)	25, 235, 276, 334, 538, 718, 1023
TaaI	ACNGT	2 cut(s)	314, 570
TaqI	TCGA	3 cut(s)	282, 572, 838
TasI	AATT	9 cut(s)	109, 356, 478, 557, 780, 784, 794, 882, 971
TfiI	GAWTC	5 cut(s)	104, 535, 563, 599, 1073
Tru1I	TTAA	5 cut(s)	8, 426, 441, 512, 783
Tru9I	TTAA	5 cut(s)	8, 426, 441, 512, 783
TseI	GCWGC	3 cut(s)	715, 824, 923
TspDTI	ATGAA	7 cut(s)	54, 72, 96, 612, 624, 788, 886
TspGWI	ACGGA	3 cut(s)	168, 886, 931
Tth111I	GACNNNGTC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	685, 776
VspI	ATTAAT	2 cut(s)	426, 783
XapI	RAATTY	3 cut(s)	356, 478, 971
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.