Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Reverse (-)

33460260 .. 33460742

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1205300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGCAAAAAGAAAGGAGCAGCTGGAGGACTCGTTGTTTGGAGCCATTAGTTCCCCACTTGAGTAATGGTATGCTTTCGGTTGATGGGGAGGATGGAGAGTTATCGGAAGAGGAGACTCAGGAAAAGAAACCTGTCTGGGTGGATGAGGAAGAGAAGGCCAAACAAATATTGCTGAAGTTAAGGAAGCTGAGGAAGGAGGAGGAGGAGAGTTTGATCTCGGGTTCAGTTTATATGTCAAGATTGAGAGCTCAACATGCTGAGCTGAACCCAGGCACAGAATGGGCTCAACTTGATCGAGAGTTGCGGGATGGTAGTTATTCTGATGATGATCTCCTTGGAACGAATGAGGATCTTGTTGTGAAGAGCAGCGCGAAGTTGTTGTCTGGACTTCTTGAATATTCAGCACTTGTAAATGCAAATGCAGAGGAACCTTCGAATGGTCCGATTATCTCAGTGCACTTTCATAGAAACGGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

4.82

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	4 cut(s)	24, 190, 251, 265
AluI	AGCT	4 cut(s)	24, 190, 251, 265
Alw21I	GWGCWC	2 cut(s)	253, 462
Alw26I	GTCTC	1 cut(s)	110
Alw44I	GTGCAC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	458
ApeKI	GCWGC	2 cut(s)	21, 369
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 368, 400
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	462
BanII	GRGCYC	2 cut(s)	253, 289
Bbv12I	GWGCWC	2 cut(s)	253, 462
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	33, 381
BccI	CCATC	3 cut(s)	80, 89, 305
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	22, 370
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	23, 371
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	2 cut(s)	45, 432
BmrFI	CCNGG	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	271, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	271, 337
BseGI	GGATG	3 cut(s)	100, 151, 316
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	4 cut(s)	134, 182, 252, 468
BseRI	GAGGAG	4 cut(s)	128, 215, 218, 221
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	33, 381
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	253, 462
BsiHKCI	CYCGRG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	3 cut(s)	253, 289, 462
Bsp143I	GATC	5 cut(s)	216, 295, 331, 352, 477
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	4 cut(s)	133, 183, 253, 467
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	45, 432
BspPI	GGATC	1 cut(s)	360
BspQI	GCTCTTC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	271, 337
BssMI	GATC	5 cut(s)	216, 295, 331, 352, 477
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	3 cut(s)	105, 147, 359
BstBI	TTCGAA	1 cut(s)	437
BstDEI	CTNAG	4 cut(s)	120, 191, 261, 454
BstF5I	GGATG	3 cut(s)	100, 151, 316
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	5 cut(s)	219, 298, 334, 355, 480
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	216, 295, 331, 352, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	462
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	33, 381
BstX2I	RGATCY	2 cut(s)	352, 477
BstYI	RGATCY	2 cut(s)	352, 477
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	100, 151, 316
BtsIMutI	CAGTG	1 cut(s)	462
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	443
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	7 cut(s)	24, 46, 161, 190, 251, 265, 287
CviKI_1	RGCY	7 cut(s)	24, 46, 161, 190, 251, 265, 287
DdeI	CTNAG	4 cut(s)	120, 191, 261, 454
DpnI	GATC	5 cut(s)	218, 297, 333, 354, 479
DpnII	GATC	5 cut(s)	216, 295, 331, 352, 477
Eam1104I	CTCTTC	3 cut(s)	105, 147, 359
EarI	CTCTTC	3 cut(s)	105, 147, 359
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	253, 289
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	253, 289
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	1 cut(s)	260
FaiI	YATR	5 cut(s)	74, 234, 236, 258, 468
FatI	CATG	1 cut(s)	256
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	22, 370
FokI	GGATG	3 cut(s)	107, 158, 323
FriOI	GRGCYC	2 cut(s)	253, 289
Fsp4HI	GCNGC	2 cut(s)	22, 370
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	2 cut(s)	22, 370
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	31, 118
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	4 cut(s)	109, 325, 447, 482
Hpy188III	TCNNGA	5 cut(s)	122, 240, 299, 387, 395
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	151, 190, 444
HpyCH4V	TGCA	3 cut(s)	419, 425, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	4 cut(s)	120, 191, 261, 454
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	216, 295, 331, 352, 477
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	3 cut(s)	4, 18, 43
LpnPI	CCDG	7 cut(s)	10, 107, 124, 147, 258, 285, 372
Lsp1109I	GCAGC	2 cut(s)	33, 381
MalI	GATC	5 cut(s)	218, 297, 333, 354, 479
MboI	GATC	5 cut(s)	216, 295, 331, 352, 477
MboII	GAAGA	3 cut(s)	122, 164, 376
MflI	RGATCY	2 cut(s)	352, 477
MhlI	GDGCHC	3 cut(s)	253, 289, 462
MlyI	GAGTC	2 cut(s)	25, 112
MseI	TTAA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	5 cut(s)	216, 295, 331, 352, 477
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	45, 432
NspI	RCATGY	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	23, 371
PleI	GAGTC	2 cut(s)	25, 112
PpsI	GAGTC	2 cut(s)	25, 112
Psp124BI	GAGCTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	45, 432
PspPI	GGNCC	1 cut(s)	443
PsuI	RGATCY	2 cut(s)	352, 477
PvuII	CAGCTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	22, 370
Sau3AI	GATC	5 cut(s)	216, 295, 331, 352, 477
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	2 cut(s)	25, 112
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	3 cut(s)	253, 289, 462
SetI	ASST	6 cut(s)	26, 136, 192, 253, 267, 436
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SsiI	CCGC	1 cut(s)	307
SspI	AATATT	2 cut(s)	171, 401
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	337
TaqI	TCGA	2 cut(s)	298, 437
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	2 cut(s)	21, 369
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	462
VneI	GTGCAC	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	443
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.