Rmu_sc0000076.1_g000034

U3 small nucleolar RNA-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000076.1
Physical Location & Seq
Forward (+)
158579 .. 160261
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000076.1_g000034.1.cds

Sequence Viewer

Length: 1683 bp
atgagtttaatatcacaaaacattcccggccacaagactaagaggatggatgctgatgaaccttcatttctgcaagggaatgaagatagcgctgatggcaaagaatctaatttagagatcatgaggatgacaaagagaaagaaagcacgcaacggagaggatgagaaggtggcagttgagcaagaaaaggaaacgaagaagctggaaaactttttgtttggatcaatctattccccagttgagtttgggaaggaggatgaggaagaagctgtagaccaggtcgataaaggctctgctttattctttgttgaccgttctgcaagtattgtgcaccctggtaatgatgatgatgcaaaattctcagaagaggatactaagcaaaggaaacctgtgtggatggatgaggaagaggaaaaggccaacattaatatcgctagggttaatagattgaggaagctgaggaaggaagaggatgagagttttatttctggttctgagtatgttttacgattaagggctcagcatgctaagctgaatccaggtacagaatggtctcaatttgattcacagtcaaggtacaatagatactctgatgatgaatcctccgatgaagaaaatggcttagtagtgccccgtggctacaaggaggttggagctgttgatgatctccttcgtacaaatgaggaccttgttgtgaagagtggtggaaagttgcttcctggacttcttgaatattcaacacttgtggatgcaaatgcagaggaaccttgtaatggtccaattaattcagtgcaatttcatagaaatgctcagttgcttcttgctgctggattggatcgaacgcttagattttttcagattgatggcaaacggaatactaaaattgaaagcattttcattgatgattgtcccatacggaaggcagctttcttgcctgatggttctcaggttattatagctggaaggaggaaattcttctatagttttgatttagtaaaggcgaaagttgataaaataggtcccctggttggtagagaagagaaaagcttggaagtttttgaggtttcccctgattcaagtacgatcgcgttcgtgggaaatgaaggttatatcttattggtttccactaaaacaaaggaattgattgggacactcaagatgaatggaacagttcgctctttagctttttccaatgatgggaagcaactattgagctctggtggagatggacaggtttaccagtgggatctgagaacaggggcctgcttccataaaatggttgatgaaggttgtatcaatggtacagccctttgtacatctccaaatgaatccttgtttgctgctggttcagacagtgggattgttaatatttataatagagatgaggttttaggaggcaaaagaaaaccaatcaagactatcgagaatcttacaaccaaagtagattttatgaagttcaataatgatgctcaaattttagctatttgttcgagcatgaagaagaacagcttaaagttggtacatgttccatcatacactgtattttccaactggcctcctcaaaggcaggtcctgcattatcctcgctgtttggattttagtcccggtggaggtttcatggctgtgggcaatgctgctggaaaagtgttgttgtacaagttgcatcattaccatcatgcatag

Protein Analysis

560

Amino Acids

62.59

Weight (kDa)

5.73

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1374
Acc36I ACCTGC 1 cut(s) 1558
AccB7I CCANNNNNTGG 1 cut(s) 1276
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 1088
AclWI GGATC 3 cut(s) 229, 843, 1254
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 3 cut(s) 356, 971, 1473
AfaI GTAC 8 cut(s) 544, 578, 676, 1081, 1303, 1315, 1521, 1655
AfeI AGCGCT 1 cut(s) 91
AfiI CCNNNNNNNGG 5 cut(s) 773, 1028, 1197, 1276, 1610
AflIII ACRYGT 1 cut(s) 1522
AgsI TTSAA 5 cut(s) 731, 738, 887, 1077, 1459
AjnI CCWGG 5 cut(s) 276, 334, 538, 718, 1023
Alw21I GWGCWC 2 cut(s) 333, 1217
Alw26I GTCTC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 3 cut(s) 229, 843, 1254
AlwNI CAGNNNCTG 1 cut(s) 1573
Aor51HI AGCGCT 1 cut(s) 91
AoxI GGCC 4 cut(s) 28, 417, 1260, 1553
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 4 cut(s) 824, 923, 1340, 1634
ApoI RAATTY 3 cut(s) 356, 971, 1473
AseI ATTAAT 2 cut(s) 426, 783
Asp700I GAANNNNTTC 1 cut(s) 974
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 5 cut(s) 685, 776, 1019, 1260, 1570
AsuC2I CCSGG 2 cut(s) 27, 1605
AvaII GGWCC 4 cut(s) 685, 776, 1019, 1570
BaeGI GKGCMC 2 cut(s) 333, 633
BanII GRGCYC 2 cut(s) 520, 1217
Bbv12I GWGCWC 2 cut(s) 333, 1217
BbvCI CCTCAGC 1 cut(s) 458
BbvI GCAGC 4 cut(s) 811, 935, 1327, 1621
BccI CCATC 9 cut(s) 40, 89, 391, 857, 932, 1190, 1220, 1537, 1680
BcgI CGANNNNNNTGC 2 cut(s) 1565, 1599
BciT130I CCWGG 5 cut(s) 278, 336, 540, 720, 1025
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 2 cut(s) 27, 1605
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 2 cut(s) 270, 979
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 1558
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 4 cut(s) 825, 924, 1341, 1635
BlpI GCTNAGC 2 cut(s) 519, 528
BlsI GCNGC 4 cut(s) 826, 925, 1342, 1636
Bme1390I CCNGG 7 cut(s) 27, 278, 336, 540, 720, 1025, 1605
Bme18I GGWCC 4 cut(s) 685, 776, 1019, 1570
BmgT120I GGNCC 5 cut(s) 685, 776, 1019, 1260, 1570
BmiI GGNNCC 3 cut(s) 765, 1021, 1261
BmrFI CCNGG 7 cut(s) 27, 278, 336, 540, 720, 1025, 1605
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 5 cut(s) 40, 340, 739, 1456, 1672
BmuI ACTGGG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 458
Bpu1102I GCTNAGC 2 cut(s) 519, 528
BpuEI CTTGAG 1 cut(s) 1139
BpuMI CCSGG 2 cut(s) 27, 1605
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 334, 634, 1023
Bsc4I CCNNNNNNNGG 5 cut(s) 773, 1028, 1197, 1276, 1610
Bse1I ACTGG 3 cut(s) 236, 1240, 1556
Bse3DI GCAATG 1 cut(s) 1636
BseBI CCWGG 5 cut(s) 278, 336, 540, 720, 1025
BseDI CCNNGG 3 cut(s) 334, 634, 1023
BseGI GGATG 9 cut(s) 51, 55, 132, 166, 262, 402, 406, 478, 754
BseLI CCNNNNNNNGG 5 cut(s) 773, 1028, 1197, 1276, 1610
BseMI GCAATG 1 cut(s) 1636
BseMII CTCAG 7 cut(s) 375, 449, 486, 533, 824, 959, 1241
BseNI ACTGG 3 cut(s) 236, 1240, 1556
BseRI GAGGAG 1 cut(s) 1548
BseSI GKGCMC 2 cut(s) 333, 633
BseXI GCAGC 4 cut(s) 811, 935, 1327, 1621
Bsh1236I CGCG 1 cut(s) 1088
Bsh1285I CGRYCG 1 cut(s) 1086
BshFI GGCC 4 cut(s) 30, 419, 1262, 1555
BsiEI CGRYCG 1 cut(s) 1086
BsiHKAI GWGCWC 2 cut(s) 333, 1217
BsiSI CCGG 2 cut(s) 27, 1605
BslFI GGGAC 4 cut(s) 894, 1005, 1162, 1587
BslI CCNNNNNNNGG 5 cut(s) 773, 1028, 1197, 1276, 1610
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 4 cut(s) 894, 1005, 1162, 1587
BsnI GGCC 4 cut(s) 30, 419, 1262, 1555
Bso31I GGTCTC 1 cut(s) 558
Bsp1286I GDGCHC 4 cut(s) 333, 520, 633, 1217
Bsp1407I TGTACA 2 cut(s) 1313, 1653
Bsp143I GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
Bsp1720I GCTNAGC 2 cut(s) 519, 528
BspANI GGCC 4 cut(s) 30, 419, 1262, 1555
BspCNI CTCAG 7 cut(s) 374, 450, 487, 532, 823, 958, 1242
BspFNI CGCG 1 cut(s) 1088
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 765, 1021, 1261
BspMI ACCTGC 1 cut(s) 1558
BspPI GGATC 3 cut(s) 229, 843, 1254
BspTNI GGTCTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 1636
BsrGI TGTACA 2 cut(s) 1313, 1653
BsrI ACTGG 3 cut(s) 236, 1240, 1556
BssECI CCNNGG 3 cut(s) 334, 634, 1023
BssMI GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
Bst2UI CCWGG 5 cut(s) 278, 336, 540, 720, 1025
Bst4CI ACNGT 5 cut(s) 314, 570, 1171, 1355, 1540
Bst6I CTCTTC 5 cut(s) 360, 402, 462, 692, 1032
BstAPI GCANNNNNTGC 1 cut(s) 1573
BstAUI TGTACA 2 cut(s) 1313, 1653
BstC8I GCNNGC 3 cut(s) 148, 525, 1264
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 9 cut(s) 51, 55, 132, 166, 262, 402, 406, 478, 754
BstFNI CGCG 1 cut(s) 1088
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 120, 224, 667, 838, 1086, 1249
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
BstMCI CGRYCG 1 cut(s) 1086
BstMWI GCNNNNNNNGC 4 cut(s) 96, 524, 529, 1573
BstNI CCWGG 5 cut(s) 278, 336, 540, 720, 1025
BstNSI RCATGY 2 cut(s) 527, 1526
BstSCI CCNGG 7 cut(s) 25, 276, 334, 538, 718, 1023, 1603
BstSFI CTRYAG 2 cut(s) 270, 979
BstSLI GKGCMC 2 cut(s) 333, 633
BstUI CGCG 1 cut(s) 1088
BstV1I GCAGC 4 cut(s) 811, 935, 1327, 1621
BstX2I RGATCY 1 cut(s) 1246
BstYI RGATCY 1 cut(s) 1246
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 4 cut(s) 30, 419, 1262, 1555
BtgI CCRYGG 1 cut(s) 634
BtsCI GGATG 9 cut(s) 51, 55, 132, 166, 262, 402, 406, 478, 754
BtsIMutI CAGTG 4 cut(s) 795, 1247, 1360, 1536
BveI ACCTGC 1 cut(s) 1558
Cac8I GCNNGC 3 cut(s) 148, 525, 1264
CaiI CAGNNNCTG 1 cut(s) 1573
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 685, 776, 1019, 1260, 1570
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 8 cut(s) 543, 577, 675, 1080, 1302, 1314, 1520, 1654
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 6 cut(s) 121, 524, 1495, 1523, 1618, 1676
CviQI GTAC 8 cut(s) 543, 577, 675, 1080, 1302, 1314, 1520, 1654
DpnI GATC 6 cut(s) 119, 223, 666, 837, 1085, 1248
DpnII GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 5 cut(s) 360, 402, 462, 692, 1032
EarI CTCTTC 5 cut(s) 360, 402, 462, 692, 1032
Ecl136II GAGCTC 1 cut(s) 1215
Eco24I GRGCYC 2 cut(s) 520, 1217
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 4 cut(s) 685, 776, 1019, 1570
Eco47III AGCGCT 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 1215
EcoICRI GAGCTC 1 cut(s) 1215
EcoO109I RGGNCCY 4 cut(s) 685, 1019, 1260, 1570
EcoRII CCWGG 5 cut(s) 276, 334, 538, 718, 1023
EcoT22I ATGCAT 1 cut(s) 1681
EcoT38I GRGCYC 2 cut(s) 520, 1217
FaeI CATG 6 cut(s) 124, 527, 1498, 1526, 1621, 1679
FalI AAGNNNNNCTT 2 cut(s) 1493, 1525
FaqI GGGAC 4 cut(s) 894, 1005, 1162, 1587
FatI CATG 6 cut(s) 120, 523, 1494, 1522, 1617, 1675
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 4 cut(s) 825, 924, 1341, 1635
FokI GGATG 9 cut(s) 58, 62, 139, 173, 269, 409, 413, 485, 761
FriOI GRGCYC 2 cut(s) 520, 1217
Fsp4HI GCNGC 4 cut(s) 825, 924, 1341, 1635
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 825, 924, 1341, 1635
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 4 cut(s) 30, 419, 1262, 1555
HapII CCGG 2 cut(s) 27, 1605
HhaI GCGC 1 cut(s) 92
Hin1II CATG 6 cut(s) 124, 527, 1498, 1526, 1621, 1679
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 1045
HinfI GANTC 7 cut(s) 104, 535, 563, 599, 1073, 1328, 1426
HpaII CCGG 2 cut(s) 27, 1605
Hpy166II GTNNAC 4 cut(s) 274, 310, 331, 1237
Hpy188I TCNGA 7 cut(s) 364, 496, 592, 607, 858, 1251, 1351
Hpy188III TCNNGA 5 cut(s) 121, 728, 1156, 1414, 1423
Hpy8I GTNNAC 4 cut(s) 274, 310, 331, 1237
HpyAV CCTTC 9 cut(s) 72, 160, 244, 457, 680, 913, 957, 1097, 1280
HpyCH4III ACNGT 5 cut(s) 314, 570, 1171, 1355, 1540
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 524, 529, 1573
Hsp92II CATG 6 cut(s) 124, 527, 1498, 1526, 1621, 1679
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 4 cut(s) 811, 935, 1327, 1621
LweI GCATC 5 cut(s) 40, 340, 739, 1456, 1672
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 1 cut(s) 435
MalI GATC 6 cut(s) 119, 223, 666, 837, 1085, 1248
MboI GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
MflI RGATCY 1 cut(s) 1246
MhlI GDGCHC 4 cut(s) 333, 520, 633, 1217
MmeI TCCRAC 2 cut(s) 631, 1572
Mph1103I ATGCAT 1 cut(s) 1681
MroXI GAANNNNTTC 1 cut(s) 974
MseI TTAA 7 cut(s) 8, 426, 441, 512, 783, 1365, 1511
MslI CAYNNNNRTG 3 cut(s) 125, 804, 1622
MspI CCGG 2 cut(s) 27, 1605
MspR9I CCNGG 7 cut(s) 27, 278, 336, 540, 720, 1025, 1605
MvaI CCWGG 5 cut(s) 278, 336, 540, 720, 1025
MvnI CGCG 1 cut(s) 1088
MwoI GCNNNNNNNGC 4 cut(s) 96, 524, 529, 1573
NciI CCSGG 2 cut(s) 27, 1605
NdeII GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
NlaIII CATG 6 cut(s) 124, 527, 1498, 1526, 1621, 1679
NlaIV GGNNCC 3 cut(s) 765, 1021, 1261
NsiI ATGCAT 1 cut(s) 1681
NspI RCATGY 2 cut(s) 527, 1526
PaeI GCATGC 1 cut(s) 527
PagI TCATGA 1 cut(s) 120
PciI ACATGT 1 cut(s) 1522
PdmI GAANNNNTTC 1 cut(s) 974
PfeI GAWTC 7 cut(s) 104, 535, 563, 599, 1073, 1328, 1426
PflFI GACNNNGTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 1276
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 4 cut(s) 826, 925, 1342, 1636
Ple19I CGATCG 1 cut(s) 1086
PpuMI RGGWCCY 3 cut(s) 685, 1019, 1570
PscI ACATGT 1 cut(s) 1522
PshBI ATTAAT 2 cut(s) 426, 783
PsiI TTATAA 1 cut(s) 1374
Psp124BI GAGCTC 1 cut(s) 1217
Psp5II RGGWCCY 3 cut(s) 685, 1019, 1570
Psp6I CCWGG 5 cut(s) 276, 334, 538, 718, 1023
PspGI CCWGG 5 cut(s) 276, 334, 538, 718, 1023
PspN4I GGNNCC 3 cut(s) 765, 1021, 1261
PspPI GGNCC 5 cut(s) 685, 776, 1019, 1260, 1570
PspPPI RGGWCCY 3 cut(s) 685, 1019, 1570
PstNI CAGNNNCTG 1 cut(s) 1573
PsuI RGATCY 1 cut(s) 1246
PsyI GACNNNGTC 1 cut(s) 278
PvuI CGATCG 1 cut(s) 1086
RsaI GTAC 8 cut(s) 544, 578, 676, 1081, 1303, 1315, 1521, 1655
RsaNI GTAC 8 cut(s) 543, 577, 675, 1080, 1302, 1314, 1520, 1654
RseI CAYNNNNRTG 3 cut(s) 125, 804, 1622
SacI GAGCTC 1 cut(s) 1217
SaqAI TTAA 7 cut(s) 8, 426, 441, 512, 783, 1365, 1511
SatI GCNGC 4 cut(s) 825, 924, 1341, 1635
Sau3AI GATC 6 cut(s) 117, 221, 664, 835, 1083, 1246
Sau96I GGNCC 5 cut(s) 685, 776, 1019, 1260, 1570
ScrFI CCNGG 7 cut(s) 27, 278, 336, 540, 720, 1025, 1605
SduI GDGCHC 4 cut(s) 333, 520, 633, 1217
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 5 cut(s) 40, 340, 739, 1456, 1672
SfcI CTRYAG 2 cut(s) 270, 979
SinI GGWCC 4 cut(s) 685, 776, 1019, 1570
SmiMI CAYNNNNRTG 3 cut(s) 125, 804, 1622
SmlI CTYRAG 1 cut(s) 1154
SmoI CTYRAG 1 cut(s) 1154
SphI GCATGC 1 cut(s) 527
SspI AATATT 2 cut(s) 734, 1369
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 1 cut(s) 1217
StyD4I CCNGG 7 cut(s) 25, 276, 334, 538, 718, 1023, 1603
TaaI ACNGT 5 cut(s) 314, 570, 1171, 1355, 1540
TaqI TCGA 4 cut(s) 282, 838, 1422, 1490
TatI WGTACW 2 cut(s) 1313, 1653
TfiI GAWTC 7 cut(s) 104, 535, 563, 599, 1073, 1328, 1426
Tru1I TTAA 7 cut(s) 8, 426, 441, 512, 783, 1365, 1511
Tru9I TTAA 7 cut(s) 8, 426, 441, 512, 783, 1365, 1511
TscAI CASTG 4 cut(s) 795, 1247, 1360, 1543
TseI GCWGC 4 cut(s) 824, 923, 1340, 1634
TspGWI ACGGA 3 cut(s) 168, 886, 931
TspRI CASTG 4 cut(s) 795, 1247, 1360, 1543
Tth111I GACNNNGTC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 1276
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 4 cut(s) 685, 776, 1019, 1570
VspI ATTAAT 2 cut(s) 426, 783
XapI RAATTY 3 cut(s) 356, 971, 1473
XceI RCATGY 2 cut(s) 527, 1526
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 974
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 1681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.