Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Reverse (-)

22033498 .. 22034313

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCCATGTGTACAATTTGTACGACACGTGGCGTATGCCATGTATGCCCTGACATGTCAAAACTTTAATGCGTTGGTGAACATTTGTTTTACTGAAATTTCGATGTCTACATGTTTATCTGCATTGGATTTGTTCTATGTGAACCATTCTGCCAATGGCATGCTTTCGATTGATGGAGAGGATGGAGAGTTATCGGATGAGGAGACTCAGGAAGGGAAACCTGTCCTGGTGGATGAGGAAGAGAAGGTCAAACAAATATTGCTAAAGTTAAGGAAGCTGAGGAAGGAGGAGGAGGAGAGTTTGATTTCGGGTTCAGTTTATATGTCAAGATTGAGAGCTCAACATGCTGAGCTGAACCCAGGCACAGAATGGGCTCAACTTGATCGAGAGTTGTGGGATGGTAGTTATTCTGATGATGATCTCCTTGGAACGAATGAGGATCTTGTTGTGAAGAGCAGCGCAAAGTTGTTGTCTGGACTTCTTGAATATTCAGCACTTGTAAATGCAAATGCAGAGGAACCTTCGAATGGTCCGATAATCTCAGTGCACCTTCGTAGAAACGGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

4.58

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	28
AfaI	GTAC	2 cut(s)	12, 21
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	3 cut(s)	25, 53, 110
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	225, 358
AluBI	AGCT	3 cut(s)	277, 338, 352
AluI	AGCT	3 cut(s)	277, 338, 352
Alw21I	GWGCWC	2 cut(s)	340, 549
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	1 cut(s)	447
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	340, 376
BbrPI	CACGTG	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	340, 549
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	3 cut(s)	167, 176, 392
BciT130I	CCWGG	2 cut(s)	227, 360
BcoDI	GTCTC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	457
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	227, 360
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	2 cut(s)	227, 360
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	358, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	227, 360
BseDI	CCNNGG	2 cut(s)	358, 424
BseGI	GGATG	4 cut(s)	187, 202, 238, 403
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	4 cut(s)	221, 269, 339, 555
BseRI	GAGGAG	4 cut(s)	215, 302, 305, 308
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	468
BsiHKAI	GWGCWC	2 cut(s)	340, 549
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	340, 376, 549
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	382, 418, 439, 564
Bsp1720I	GCTNAGC	1 cut(s)	348
BspCNI	CTCAG	4 cut(s)	220, 270, 340, 554
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	358, 424
BssMI	GATC	4 cut(s)	382, 418, 439, 564
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	227, 360
Bst6I	CTCTTC	2 cut(s)	234, 446
BstAUI	TGTACA	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	207, 278, 348, 541
BstF5I	GGATG	4 cut(s)	187, 202, 238, 403
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	4 cut(s)	385, 421, 442, 567
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	382, 418, 439, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 344
BstNI	CCWGG	2 cut(s)	227, 360
BstNSI	RCATGY	4 cut(s)	57, 114, 163, 347
BstSCI	CCNGG	2 cut(s)	225, 358
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	468
BstX2I	RGATCY	2 cut(s)	439, 564
BstYI	RGATCY	2 cut(s)	439, 564
BtsCI	GGATG	4 cut(s)	187, 202, 238, 403
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	11, 20
CviAII	CATG	6 cut(s)	6, 40, 54, 111, 160, 344
CviJI	RGCY	4 cut(s)	277, 338, 352, 374
CviKI_1	RGCY	4 cut(s)	277, 338, 352, 374
CviQI	GTAC	2 cut(s)	11, 20
DdeI	CTNAG	4 cut(s)	207, 278, 348, 541
DpnI	GATC	4 cut(s)	384, 420, 441, 566
DpnII	GATC	4 cut(s)	382, 418, 439, 564
Eam1104I	CTCTTC	2 cut(s)	234, 446
EarI	CTCTTC	2 cut(s)	234, 446
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	2 cut(s)	340, 376
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	338
Eco72I	CACGTG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	225, 358
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	340, 376
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	6 cut(s)	9, 43, 57, 114, 163, 347
FatI	CATG	6 cut(s)	5, 39, 53, 110, 159, 343
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	4 cut(s)	194, 209, 245, 410
FriOI	GRGCYC	2 cut(s)	340, 376
Fsp4HI	GCNGC	1 cut(s)	457
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	1 cut(s)	457
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	6 cut(s)	9, 43, 57, 114, 163, 347
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	5 cut(s)	11, 79, 108, 142, 547
Hpy188I	TCNGA	4 cut(s)	196, 412, 534, 569
Hpy188III	TCNNGA	5 cut(s)	209, 327, 386, 474, 482
Hpy8I	GTNNAC	5 cut(s)	11, 79, 108, 142, 547
HpyAV	CCTTC	5 cut(s)	206, 238, 277, 531, 560
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	122, 506, 512, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 344
HpyF3I	CTNAG	4 cut(s)	207, 278, 348, 541
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	9, 43, 57, 114, 163, 347
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	382, 418, 439, 564
LguI	GCTCTTC	1 cut(s)	446
LpnPI	CCDG	8 cut(s)	62, 194, 212, 234, 239, 345, 372, 459
Lsp1109I	GCAGC	1 cut(s)	468
MaeII	ACGT	1 cut(s)	27
MalI	GATC	4 cut(s)	384, 420, 441, 566
MboI	GATC	4 cut(s)	382, 418, 439, 564
MboII	GAAGA	2 cut(s)	251, 463
MflI	RGATCY	2 cut(s)	439, 564
MhlI	GDGCHC	3 cut(s)	340, 376, 549
MluCI	AATT	2 cut(s)	14, 96
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	9 cut(s)	172, 193, 229, 273, 280, 283, 286, 430, 508
MseI	TTAA	2 cut(s)	66, 269
MspR9I	CCNGG	2 cut(s)	227, 360
MvaI	CCWGG	2 cut(s)	227, 360
MwoI	GCNNNNNNNGC	2 cut(s)	44, 344
NdeII	GATC	4 cut(s)	382, 418, 439, 564
NlaIII	CATG	6 cut(s)	9, 43, 57, 114, 163, 347
NlaIV	GGNNCC	1 cut(s)	519
NspI	RCATGY	4 cut(s)	57, 114, 163, 347
NspV	TTCGAA	1 cut(s)	524
PaeI	GCATGC	1 cut(s)	163
PciI	ACATGT	2 cut(s)	53, 110
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	1 cut(s)	199
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	28
PscI	ACATGT	2 cut(s)	53, 110
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	225, 358
PspCI	CACGTG	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	225, 358
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	439, 564
RsaI	GTAC	2 cut(s)	12, 21
RsaNI	GTAC	2 cut(s)	11, 20
SacI	GAGCTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	66, 269
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	4 cut(s)	382, 418, 439, 564
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	227, 360
SduI	GDGCHC	3 cut(s)	340, 376, 549
SetI	ASST	8 cut(s)	30, 223, 249, 279, 340, 354, 523, 552
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	530
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	14, 96
SspI	AATATT	2 cut(s)	258, 488
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	225, 358
StyI	CCWWGG	1 cut(s)	424
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	101, 167, 385, 524
TasI	AATT	2 cut(s)	14, 96
TatI	WGTACW	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	66, 269
Tru9I	TTAA	2 cut(s)	66, 269
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	1 cut(s)	456
TspRI	CASTG	1 cut(s)	549
VneI	GTGCAC	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	4 cut(s)	57, 114, 163, 347
XcmI	CCANNNNNNNNNTGG	2 cut(s)	152, 366
XmiI	GTMKAC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.