Prupe.5G054300_v2.0.a1

U3 small nucleolar RNA-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
5810791 .. 5814360
3570 bp
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UTR
Exon/CDS
Intron
Prupe.5G054300.2

Sequence Viewer

Length: 1695 bp
ATGAGTCTCATATCCCAAAATATTCCGTCGGCTTTTAAAGCTCGCAAGACTAATAGGGAGGATACAGATGAGCCATCATTTCTGCAAGGGAATGAACACAATGGAGATGGAAAAGAATCTAGTTTAGATATTATGAGGACAAAGAAGAGAAAGAAAGCACGCAAGGATGACGATGAGAAGGTGGCAGTTGAGCAGGAAATGGAAATGAAGAAGCTGGAAAGCTTTTTGTTTGGATCAATTTATTCCCCAGTTAAATTTGGGAAGGAGGATGAGGAGGAAGCTGGGGACACTGTGGATACAGGCTCTGCTTTATTCTTCGTGGACCGTTCTGCAAATAGTTTGGCCCCTATTTATGAAGAGGATGCAGACTTCTCGGAAGAGGAGAATAAGCAAAGGAAACCTGTCTGGGTGGATGATGAAGAGGAAAAGGCCAACATAAATATTGCTAAAGTTAACAGACTAAGGAAGCTGAGGAAGGAAGAGGATGAGATTTTGATTTCGGGTTCAGAGTATGTGTTAAGATTGAGGGCTCAACATGCTAAGCTGAACCCAGGCACAGAATGGTCTCACCTTGATTCAAAGTTGAGGAACAATAGATATTCTGATGATGAATCATCAGATGACGAAAATGGGGTAGTAGTGGCCCGTGGCTACAAGGATGTAGAAGCTGTTGATGATCTTCTTCGTACAAATGAGGATCTTGTTGTGAAGAGCAGTGGCAAATTGCTGCCTGGACTTCTTGAATATTCGGTACTTGTGAATGGAAATGCAGAGGAACCTTCTAAAGGTCCAATTAATTCAGTACAGTTTCATAGAAATGCTCAGTTGCTCCTCACTGCTGGGTTGGATCGAAGGCTTAGATTTTTTCAGATTGATGGAAAACGGAATACTAAAATAGAAAGCATCTTCCTTGATGATTGTCCCATTCGAAAGGCATCTTTTTTGCCTGATGGATCACAGGTTATTATAGCTGGAAGGAGGAACTTCTTTTACAGCTTTGATTTAGTGAAGGCAAAGGTTGATAAAATAGGTCCCCTGGTTGGTAGAGATGAAAAAAGCTTGGAAGTTTTTGAGGTTTCCCCTGATTCTAGCACAATTGCCTTTGTGGGCAATGAAGGTTATATCTTGTTGGTTTCCTCTAAAACGAAGGAATTGATTGGGACACTCAAGATGAATGGAACTGTTCGCTCTTTATCTTTTGCCAATGATGGGAAGCAATTATTGAGCTCTGGTGGTGATGGACAGGTTTACCACTGGGATCTGAGAACAGGGGCCTGCTTCCACAAGGCACTTGATGAAGGTTGCATAAATGGTACCGCTTTGTGTACATCTCCAAATGGGACCATGTTTGCTGCTGGTTCAGACAGTGGGATTGTCAATATTTACAATAGAGAGGAGTTTTTAGGGGGAAAGAGAAAACCTATCAAGGCCATCGAGAATCTTACAACCAAAGTAGATTTTCTGAAGTTCAATAATGATGCTCAAATATTGGCTATTTGTTCAAGCATGCAGAAGAACAGCTTAAAGTTGGTACATGTTCCATCATTTACTGTATTTTCCAACTGGCCTCCTCAGAAAAAAGCCCTACATTATCCCCGATGTTTGGATTTTAGTCCTGGCGGAGGCATCATGGCTGTGGGTAATGCTGCTGGAAAAGTGTTATTGTACAAGTTGCATCATTACCATCATGCATAG

Protein Analysis

565

Amino Acids

62.9

Weight (kDa)

6.04

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1313
AccB1I GGYRCC 1 cut(s) 1313
AciI CCGC 2 cut(s) 1317, 1620
AclWI GGATC 5 cut(s) 241, 705, 855, 961, 1266
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 1484
AfaI GTAC 7 cut(s) 688, 753, 804, 1315, 1327, 1533, 1667
AfiI CCNNNNNNNGG 5 cut(s) 785, 1040, 1209, 1603, 1622
AflIII ACRYGT 1 cut(s) 1534
AgsI TTSAA 4 cut(s) 579, 743, 1471, 1503
AjnI CCWGG 4 cut(s) 550, 730, 1035, 1615
Alw21I GWGCWC 1 cut(s) 1229
Alw26I GTCTC 2 cut(s) 11, 570
AlwI GGATC 5 cut(s) 241, 705, 855, 961, 1266
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 6 cut(s) 342, 429, 642, 1272, 1428, 1565
ApeKI GCWGC 3 cut(s) 727, 1352, 1646
ApoI RAATTY 1 cut(s) 254
AseI ATTAAT 1 cut(s) 795
Asp718I GGTACC 1 cut(s) 1313
AspS9I GGNCC 7 cut(s) 322, 343, 643, 788, 1031, 1272, 1341
AsuHPI GGTGA 2 cut(s) 560, 1247
AsuII TTCGAA 1 cut(s) 928
AvaII GGWCC 4 cut(s) 322, 788, 1031, 1341
BanI GGYRCC 1 cut(s) 1313
BanII GRGCYC 2 cut(s) 532, 1229
Bbv12I GWGCWC 1 cut(s) 1229
BbvCI CCTCAGC 1 cut(s) 470
BbvI GCAGC 3 cut(s) 714, 1339, 1633
BccI CCATC 9 cut(s) 82, 101, 869, 944, 1202, 1232, 1439, 1549, 1692
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 4 cut(s) 552, 732, 1037, 1617
BciVI GTATCC 2 cut(s) 55, 289
BcoDI GTCTC 2 cut(s) 11, 570
BfaI CTAG 2 cut(s) 120, 1089
BfuI GTATCC 2 cut(s) 55, 289
BisI GCNGC 3 cut(s) 728, 1353, 1647
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 3 cut(s) 729, 1354, 1648
Bme1390I CCNGG 4 cut(s) 552, 732, 1037, 1617
Bme18I GGWCC 4 cut(s) 322, 788, 1031, 1341
BmgT120I GGNCC 7 cut(s) 322, 343, 643, 788, 1031, 1272, 1341
BmiI GGNNCC 6 cut(s) 345, 777, 1033, 1273, 1315, 1342
BmrFI CCNGG 4 cut(s) 552, 732, 1037, 1617
BmrI ACTGGG 2 cut(s) 242, 1264
BmsI GCATC 6 cut(s) 352, 912, 944, 1468, 1635, 1684
BmuI ACTGGG 2 cut(s) 242, 1264
Bpu10I CCTNAGC 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 550, 646, 1035
Bsc4I CCNNNNNNNGG 5 cut(s) 785, 1040, 1209, 1603, 1622
Bse1I ACTGG 3 cut(s) 248, 1259, 1568
Bse3DI GCAATG 1 cut(s) 1117
BseBI CCWGG 4 cut(s) 552, 732, 1037, 1617
BseDI CCNNGG 3 cut(s) 550, 646, 1035
BseGI GGATG 6 cut(s) 172, 274, 367, 418, 490, 664
BseLI CCNNNNNNNGG 5 cut(s) 785, 1040, 1209, 1603, 1622
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 4 cut(s) 461, 836, 1253, 1586
BseNI ACTGG 3 cut(s) 248, 1259, 1568
BseRI GAGGAG 5 cut(s) 287, 395, 821, 1409, 1560
BseXI GCAGC 3 cut(s) 714, 1339, 1633
BseYI CCCAGC 2 cut(s) 281, 839
BshFI GGCC 6 cut(s) 344, 431, 644, 1274, 1430, 1567
BshNI GGYRCC 1 cut(s) 1313
BsiHKAI GWGCWC 1 cut(s) 1229
BslFI GGGAC 5 cut(s) 299, 906, 1017, 1174, 1354
BslI CCNNNNNNNGG 5 cut(s) 785, 1040, 1209, 1603, 1622
BsmAI GTCTC 2 cut(s) 11, 570
BsmFI GGGAC 5 cut(s) 299, 906, 1017, 1174, 1354
BsnI GGCC 6 cut(s) 344, 431, 644, 1274, 1430, 1567
Bso31I GGTCTC 1 cut(s) 570
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 2 cut(s) 532, 1229
Bsp1407I TGTACA 2 cut(s) 1325, 1665
Bsp143I GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 2 cut(s) 1317, 1620
BspANI GGCC 6 cut(s) 344, 431, 644, 1274, 1430, 1567
BspCNI CTCAG 4 cut(s) 462, 835, 1254, 1585
BspLI GGNNCC 6 cut(s) 345, 777, 1033, 1273, 1315, 1342
BspPI GGATC 5 cut(s) 241, 705, 855, 961, 1266
BspQI GCTCTTC 1 cut(s) 704
BspT104I TTCGAA 1 cut(s) 928
BspT107I GGYRCC 1 cut(s) 1313
BspTNI GGTCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 1117
BsrGI TGTACA 2 cut(s) 1325, 1665
BsrI ACTGG 3 cut(s) 248, 1259, 1568
BssECI CCNNGG 3 cut(s) 550, 646, 1035
BssMI GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
Bst2UI CCWGG 4 cut(s) 552, 732, 1037, 1617
Bst4CI ACNGT 6 cut(s) 292, 326, 807, 1183, 1367, 1552
Bst6I CTCTTC 6 cut(s) 140, 351, 372, 414, 474, 704
BstAUI TGTACA 2 cut(s) 1325, 1665
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 4 cut(s) 43, 160, 1276, 1508
BstDEI CTNAG 7 cut(s) 461, 470, 540, 822, 857, 1262, 1572
BstDSI CCRYGG 1 cut(s) 646
BstENI CCTNNNNNAGG 2 cut(s) 783, 1620
BstF5I GGATG 6 cut(s) 172, 274, 367, 418, 490, 664
BstKTI GATC 6 cut(s) 236, 679, 700, 850, 956, 1261
BstMAI GTCTC 2 cut(s) 11, 570
BstMBI GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
BstMWI GCNNNNNNNGC 2 cut(s) 38, 536
BstNI CCWGG 4 cut(s) 552, 732, 1037, 1617
BstNSI RCATGY 3 cut(s) 539, 1510, 1538
BstSCI CCNGG 4 cut(s) 550, 730, 1035, 1615
BstV1I GCAGC 3 cut(s) 714, 1339, 1633
BstX2I RGATCY 2 cut(s) 697, 1258
BstYI RGATCY 2 cut(s) 697, 1258
BsuI GTATCC 2 cut(s) 55, 289
BsuRI GGCC 6 cut(s) 344, 431, 644, 1274, 1430, 1567
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 6 cut(s) 172, 274, 367, 418, 490, 664
BtsI GCAGTG 2 cut(s) 721, 834
BtsIMutI CAGTG 5 cut(s) 288, 721, 834, 1252, 1372
Cac8I GCNNGC 4 cut(s) 43, 160, 1276, 1508
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 7 cut(s) 322, 343, 643, 788, 1031, 1272, 1341
Csp6I GTAC 7 cut(s) 687, 752, 803, 1314, 1326, 1532, 1666
CviAII CATG 6 cut(s) 536, 1345, 1507, 1535, 1630, 1688
CviQI GTAC 7 cut(s) 687, 752, 803, 1314, 1326, 1532, 1666
DdeI CTNAG 7 cut(s) 461, 470, 540, 822, 857, 1262, 1572
DpnI GATC 6 cut(s) 235, 678, 699, 849, 955, 1260
DpnII GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
DraI TTTAAA 1 cut(s) 37
Eam1104I CTCTTC 6 cut(s) 140, 351, 372, 414, 474, 704
EarI CTCTTC 6 cut(s) 140, 351, 372, 414, 474, 704
EciI GGCGGA 1 cut(s) 1635
Ecl136II GAGCTC 1 cut(s) 1227
Eco24I GRGCYC 2 cut(s) 532, 1229
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 4 cut(s) 322, 788, 1031, 1341
Eco53kI GAGCTC 1 cut(s) 1227
Eco57I CTGAAG 1 cut(s) 1484
EcoICRI GAGCTC 1 cut(s) 1227
EcoNI CCTNNNNNAGG 2 cut(s) 783, 1620
EcoO109I RGGNCCY 2 cut(s) 1031, 1272
EcoRII CCWGG 4 cut(s) 550, 730, 1035, 1615
EcoT22I ATGCAT 1 cut(s) 1693
EcoT38I GRGCYC 2 cut(s) 532, 1229
FaeI CATG 6 cut(s) 539, 1348, 1510, 1538, 1633, 1691
FalI AAGNNNNNCTT 2 cut(s) 1505, 1537
FaqI GGGAC 5 cut(s) 299, 906, 1017, 1174, 1354
FatI CATG 6 cut(s) 535, 1344, 1506, 1534, 1629, 1687
Fnu4HI GCNGC 3 cut(s) 728, 1353, 1647
FokI GGATG 6 cut(s) 179, 281, 374, 425, 497, 671
FriOI GRGCYC 2 cut(s) 532, 1229
Fsp4HI GCNGC 3 cut(s) 728, 1353, 1647
FspBI CTAG 2 cut(s) 120, 1089
GluI GCNGC 3 cut(s) 728, 1353, 1647
GsaI CCCAGC 2 cut(s) 285, 843
HaeIII GGCC 6 cut(s) 344, 431, 644, 1274, 1430, 1567
Hin1II CATG 6 cut(s) 539, 1348, 1510, 1538, 1633, 1691
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 2 cut(s) 220, 1057
HinfI GANTC 6 cut(s) 4, 116, 575, 611, 1085, 1438
HpaI GTTAAC 1 cut(s) 454
HphI GGTGA 2 cut(s) 560, 1247
Hpy166II GTNNAC 4 cut(s) 322, 454, 1249, 1326
Hpy188I TCNGA 9 cut(s) 376, 508, 604, 619, 870, 1263, 1363, 1464, 1575
Hpy188III TCNNGA 3 cut(s) 740, 1168, 1435
Hpy8I GTNNAC 4 cut(s) 322, 454, 1249, 1326
Hpy99I CGWCG 1 cut(s) 31
HpyCH4III ACNGT 6 cut(s) 292, 326, 807, 1183, 1367, 1552
HpyCH4V TGCA 8 cut(s) 85, 332, 365, 770, 1305, 1510, 1675, 1691
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 536
HpyF3I CTNAG 7 cut(s) 461, 470, 540, 822, 857, 1262, 1572
Hsp92II CATG 6 cut(s) 539, 1348, 1510, 1538, 1633, 1691
KpnI GGTACC 1 cut(s) 1317
KspAI GTTAAC 1 cut(s) 454
Kzo9I GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
LguI GCTCTTC 1 cut(s) 704
LmnI GCTCC 1 cut(s) 834
Lsp1109I GCAGC 3 cut(s) 714, 1339, 1633
LweI GCATC 6 cut(s) 352, 912, 944, 1468, 1635, 1684
MaeI CTAG 2 cut(s) 120, 1089
MalI GATC 6 cut(s) 235, 678, 699, 849, 955, 1260
MboI GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 2 cut(s) 697, 1258
MhlI GDGCHC 2 cut(s) 532, 1229
MluCI AATT 8 cut(s) 237, 254, 722, 792, 796, 1095, 1151, 1217
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 825, 1584
Mph1103I ATGCAT 1 cut(s) 1693
MseI TTAA 6 cut(s) 36, 252, 453, 518, 795, 1523
MslI CAYNNNNRTG 2 cut(s) 816, 1634
MspR9I CCNGG 4 cut(s) 552, 732, 1037, 1617
MunI CAATTG 1 cut(s) 1095
MvaI CCWGG 4 cut(s) 552, 732, 1037, 1617
MwoI GCNNNNNNNGC 2 cut(s) 38, 536
NdeII GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
NlaIII CATG 6 cut(s) 539, 1348, 1510, 1538, 1633, 1691
NlaIV GGNNCC 6 cut(s) 345, 777, 1033, 1273, 1315, 1342
NsiI ATGCAT 1 cut(s) 1693
NspI RCATGY 3 cut(s) 539, 1510, 1538
NspV TTCGAA 1 cut(s) 928
PaeI GCATGC 1 cut(s) 1510
PciI ACATGT 1 cut(s) 1534
PciSI GCTCTTC 1 cut(s) 704
PfeI GAWTC 5 cut(s) 116, 575, 611, 1085, 1438
PkrI GCNGC 3 cut(s) 729, 1354, 1648
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 1031
PscI ACATGT 1 cut(s) 1534
PshBI ATTAAT 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 1229
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 4 cut(s) 550, 730, 1035, 1615
PspFI CCCAGC 2 cut(s) 281, 839
PspGI CCWGG 4 cut(s) 550, 730, 1035, 1615
PspN4I GGNNCC 6 cut(s) 345, 777, 1033, 1273, 1315, 1342
PspPI GGNCC 7 cut(s) 322, 343, 643, 788, 1031, 1272, 1341
PspPPI RGGWCCY 1 cut(s) 1031
PsrI GAACNNNNNNTAC 2 cut(s) 974, 1006
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 2 cut(s) 697, 1258
RsaI GTAC 7 cut(s) 688, 753, 804, 1315, 1327, 1533, 1667
RsaNI GTAC 7 cut(s) 687, 752, 803, 1314, 1326, 1532, 1666
RseI CAYNNNNRTG 2 cut(s) 816, 1634
SacI GAGCTC 1 cut(s) 1229
SapI GCTCTTC 1 cut(s) 704
SaqAI TTAA 6 cut(s) 36, 252, 453, 518, 795, 1523
SatI GCNGC 3 cut(s) 728, 1353, 1647
Sau3AI GATC 6 cut(s) 233, 676, 697, 847, 953, 1258
Sau96I GGNCC 7 cut(s) 322, 343, 643, 788, 1031, 1272, 1341
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 4 cut(s) 552, 732, 1037, 1617
SduI GDGCHC 2 cut(s) 532, 1229
SfaNI GCATC 6 cut(s) 352, 912, 944, 1468, 1635, 1684
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 4 cut(s) 322, 788, 1031, 1341
SmiMI CAYNNNNRTG 2 cut(s) 816, 1634
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SphI GCATGC 1 cut(s) 1510
Sse9I AATT 8 cut(s) 237, 254, 722, 792, 796, 1095, 1151, 1217
SsiI CCGC 2 cut(s) 1317, 1620
SspI AATATT 5 cut(s) 22, 442, 746, 1381, 1488
SspMI CTAG 2 cut(s) 120, 1089
SstI GAGCTC 1 cut(s) 1229
StyD4I CCNGG 4 cut(s) 550, 730, 1035, 1615
TaaI ACNGT 6 cut(s) 292, 326, 807, 1183, 1367, 1552
TaqI TCGA 3 cut(s) 850, 928, 1434
TasI AATT 8 cut(s) 237, 254, 722, 792, 796, 1095, 1151, 1217
TatI WGTACW 3 cut(s) 802, 1325, 1665
TfiI GAWTC 5 cut(s) 116, 575, 611, 1085, 1438
Tru1I TTAA 6 cut(s) 36, 252, 453, 518, 795, 1523
Tru9I TTAA 6 cut(s) 36, 252, 453, 518, 795, 1523
TscAI CASTG 5 cut(s) 295, 721, 841, 1259, 1372
TseI GCWGC 3 cut(s) 727, 1352, 1646
TspGWI ACGGA 2 cut(s) 15, 898
TspRI CASTG 5 cut(s) 295, 721, 841, 1259, 1372
VpaK11BI GGWCC 4 cut(s) 322, 788, 1031, 1341
VspI ATTAAT 1 cut(s) 795
XagI CCTNNNNNAGG 2 cut(s) 783, 1620
XapI RAATTY 1 cut(s) 254
XceI RCATGY 3 cut(s) 539, 1510, 1538
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XspI CTAG 2 cut(s) 120, 1089
Zsp2I ATGCAT 1 cut(s) 1693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.