Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Reverse (-)

22363695 .. 22364534

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAGTTTAATATCACAAAACATTCCCGGCCACAAGACTAAGAGGATGGATGCTGATGAACCTTCATTTCTGCAAGGGAATGAAGACAGCGCTGATGGAAAAGAATTTAATTTAGAGATCATTAGGATGACAAAGAGAAAGAAAGCACGCAACAGAGAGGATGAGAAGGTGGCAGTTGAGCAAGAAAAGGAAACGAAGAAGCTGGAAAATTTTTTGTTTGGATCAATCTATTCCCCAGTTGAGTTTGGGAAGGAGGATGAGGAAGAAGCTGTAGACCAGGTCGATAAAGGCTCTGCTTTATTCTTTGTTGACCGTTCTGCAAGTATTGTGCACCCTGGTAATGATGATGATGCAAAATTCTCAGAAGAGGATACTAAGCAAAGGAAACCTGTGTGGATGGATGAGGAAGAGGAAAAGACCAACATTAATATTGCTAGGGTTAATAGATTGAGGAACCTGAGGAAGGAAGAGAATGAGAATTTTATTTCTGGTTCTGAGTTTGTTTTACGATTAAGGGCTCAGCATGCTAAGCTGAATCCAGGTACAGAATGGTCTCAATTTGATTCACAGTCGAGGTACAATAGATACTCTGATGATGAATCCTCCGATGAAGAAAATGGCTTAGTAGTGCCCCGTGGCTACAAGGAGGTTCGAGCTGTTGATGATCTCCTTCGTACAAATGAGGACCTTGTTGTGAAGAGTGGTGGAAAGTTGCTGCCTGGACTTCTTGAATATTCAACACTTGTGGATGCAAATGCAGAGGAACCTTGTAATGGTCCAATTAGTTCGGTGCAATTTCATAGAAATGCTCAGTTGCTTCTTGCTGCTGGATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

279

Amino Acids

31.74

Weight (kDa)

4.84

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	4 cut(s)	104, 208, 356, 478
AfaI	GTAC	3 cut(s)	544, 578, 676
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	463, 773
AgsI	TTSAA	2 cut(s)	731, 738
AjnI	CCWGG	4 cut(s)	276, 334, 538, 718
AluBI	AGCT	4 cut(s)	202, 269, 532, 656
AluI	AGCT	4 cut(s)	202, 269, 532, 656
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	558
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	715, 824
ApoI	RAATTY	4 cut(s)	104, 208, 356, 478
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	685, 776
AsuC2I	CCSGG	1 cut(s)	27
AvaII	GGWCC	2 cut(s)	685, 776
AxyI	CCTNAGG	1 cut(s)	458
BaeGI	GKGCMC	2 cut(s)	333, 633
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	702, 811
BccI	CCATC	3 cut(s)	40, 89, 391
BciT130I	CCWGG	4 cut(s)	278, 336, 540, 720
BciVI	GTATCC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	2 cut(s)	716, 825
BlpI	GCTNAGC	2 cut(s)	519, 528
BlsI	GCNGC	2 cut(s)	717, 826
Bme1390I	CCNGG	5 cut(s)	27, 278, 336, 540, 720
Bme18I	GGWCC	2 cut(s)	685, 776
BmgT120I	GGNCC	2 cut(s)	685, 776
BmiI	GGNNCC	2 cut(s)	455, 765
BmrFI	CCNGG	5 cut(s)	27, 278, 336, 540, 720
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	3 cut(s)	40, 340, 739
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	90
Bpu1102I	GCTNAGC	2 cut(s)	519, 528
BpuMI	CCSGG	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	334, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 773
Bse1I	ACTGG	1 cut(s)	236
Bse21I	CCTNAGG	1 cut(s)	458
BseBI	CCWGG	4 cut(s)	278, 336, 540, 720
BseDI	CCNNGG	2 cut(s)	334, 634
BseGI	GGATG	8 cut(s)	51, 55, 132, 166, 262, 402, 406, 754
BseLI	CCNNNNNNNGG	2 cut(s)	463, 773
BseMII	CTCAG	5 cut(s)	375, 449, 486, 533, 824
BseNI	ACTGG	1 cut(s)	236
BseSI	GKGCMC	2 cut(s)	333, 633
BseXI	GCAGC	2 cut(s)	702, 811
BshFI	GGCC	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	463, 773
BsmAI	GTCTC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	30
Bso31I	GGTCTC	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	333, 520, 633
Bsp143I	GATC	3 cut(s)	117, 221, 664
Bsp1720I	GCTNAGC	2 cut(s)	519, 528
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	5 cut(s)	374, 450, 487, 532, 823
BspLI	GGNNCC	2 cut(s)	455, 765
BspPI	GGATC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	334, 634
BssMI	GATC	3 cut(s)	117, 221, 664
Bst2UI	CCWGG	4 cut(s)	278, 336, 540, 720
Bst4CI	ACNGT	2 cut(s)	314, 570
Bst6I	CTCTTC	4 cut(s)	360, 402, 462, 692
BstC8I	GCNNGC	2 cut(s)	148, 525
BstDEI	CTNAG	9 cut(s)	39, 361, 375, 458, 495, 519, 528, 622, 810
BstDSI	CCRYGG	1 cut(s)	634
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	8 cut(s)	51, 55, 132, 166, 262, 402, 406, 754
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	120, 224, 667
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	3 cut(s)	117, 221, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 529
BstNI	CCWGG	4 cut(s)	278, 336, 540, 720
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	5 cut(s)	25, 276, 334, 538, 718
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	2 cut(s)	333, 633
BstV1I	GCAGC	2 cut(s)	702, 811
BstV2I	GAAGAC	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	8 cut(s)	51, 55, 132, 166, 262, 402, 406, 754
Cac8I	GCNNGC	2 cut(s)	148, 525
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	685, 776
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	543, 577, 675
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	1 cut(s)	524
CviJI	RGCY	9 cut(s)	30, 202, 269, 291, 518, 532, 621, 639, 656
CviKI_1	RGCY	9 cut(s)	30, 202, 269, 291, 518, 532, 621, 639, 656
CviQI	GTAC	3 cut(s)	543, 577, 675
DdeI	CTNAG	9 cut(s)	39, 361, 375, 458, 495, 519, 528, 622, 810
DpnI	GATC	3 cut(s)	119, 223, 666
DpnII	GATC	3 cut(s)	117, 221, 664
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	4 cut(s)	360, 402, 462, 692
EarI	CTCTTC	4 cut(s)	360, 402, 462, 692
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	2 cut(s)	685, 776
Eco47III	AGCGCT	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	458
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	4 cut(s)	276, 334, 538, 718
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	1 cut(s)	527
FaiI	YATR	2 cut(s)	525, 801
FatI	CATG	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	716, 825
FokI	GGATG	8 cut(s)	58, 62, 139, 173, 269, 409, 413, 761
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	2 cut(s)	716, 825
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	716, 825
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	527
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	3 cut(s)	535, 563, 599
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	3 cut(s)	274, 310, 331
Hpy188I	TCNGA	4 cut(s)	364, 496, 592, 607
Hpy188III	TCNNGA	1 cut(s)	728
Hpy8I	GTNNAC	3 cut(s)	274, 310, 331
HpyAV	CCTTC	5 cut(s)	72, 160, 244, 457, 680
HpyCH4III	ACNGT	2 cut(s)	314, 570
HpyCH4V	TGCA	7 cut(s)	73, 320, 331, 353, 752, 758, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 529
HpyF3I	CTNAG	9 cut(s)	39, 361, 375, 458, 495, 519, 528, 622, 810
Hsp92II	CATG	1 cut(s)	527
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	117, 221, 664
Lsp1109I	GCAGC	2 cut(s)	702, 811
LweI	GCATC	3 cut(s)	40, 340, 739
MabI	ACCWGGT	1 cut(s)	276
MaeI	CTAG	1 cut(s)	435
MalI	GATC	3 cut(s)	119, 223, 666
MboI	GATC	3 cut(s)	117, 221, 664
MboII	GAAGA	8 cut(s)	95, 208, 275, 377, 419, 479, 623, 709
MhlI	GDGCHC	3 cut(s)	333, 520, 633
MluCI	AATT	8 cut(s)	104, 109, 208, 356, 478, 557, 780, 794
MseI	TTAA	5 cut(s)	8, 108, 426, 441, 512
MslI	CAYNNNNRTG	2 cut(s)	125, 804
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	5 cut(s)	27, 278, 336, 540, 720
MvaI	CCWGG	4 cut(s)	278, 336, 540, 720
MwoI	GCNNNNNNNGC	2 cut(s)	524, 529
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	3 cut(s)	117, 221, 664
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	2 cut(s)	455, 765
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	535, 563, 599
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	717, 826
PpuMI	RGGWCCY	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	4 cut(s)	276, 334, 538, 718
PspGI	CCWGG	4 cut(s)	276, 334, 538, 718
PspN4I	GGNNCC	2 cut(s)	455, 765
PspPI	GGNCC	2 cut(s)	685, 776
PspPPI	RGGWCCY	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	3 cut(s)	544, 578, 676
RsaNI	GTAC	3 cut(s)	543, 577, 675
RseI	CAYNNNNRTG	2 cut(s)	125, 804
SaqAI	TTAA	5 cut(s)	8, 108, 426, 441, 512
SatI	GCNGC	2 cut(s)	716, 825
Sau3AI	GATC	3 cut(s)	117, 221, 664
Sau96I	GGNCC	2 cut(s)	685, 776
ScrFI	CCNGG	5 cut(s)	27, 278, 336, 540, 720
SduI	GDGCHC	3 cut(s)	333, 520, 633
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	3 cut(s)	40, 340, 739
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	2 cut(s)	685, 776
SmiMI	CAYNNNNRTG	2 cut(s)	125, 804
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	8 cut(s)	104, 109, 208, 356, 478, 557, 780, 794
SspI	AATATT	2 cut(s)	430, 734
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	5 cut(s)	25, 276, 334, 538, 718
TaaI	ACNGT	2 cut(s)	314, 570
TaqI	TCGA	3 cut(s)	282, 572, 652
TasI	AATT	8 cut(s)	104, 109, 208, 356, 478, 557, 780, 794
TfiI	GAWTC	3 cut(s)	535, 563, 599
Tru1I	TTAA	5 cut(s)	8, 108, 426, 441, 512
Tru9I	TTAA	5 cut(s)	8, 108, 426, 441, 512
TseI	GCWGC	2 cut(s)	715, 824
TspDTI	ATGAA	6 cut(s)	54, 72, 96, 612, 624, 788
Tth111I	GACNNNGTC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	685, 776
VspI	ATTAAT	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	4 cut(s)	104, 208, 356, 478
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.