Rroxscaffold_7G00179220

U3 small nucleolar RNA-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
18857443 .. 18860031
2589 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00179220.1

Sequence Viewer

Length: 1479 bp
ATGAGTTTGATATCGCAGAATATTCCCTCGGCTTTTAAATCCAACAAGAGCAAAAGGGAGGTTCCTGATGAGCCTGCGTTTATGCAACCGAATGATGAGAATGGAGATGGGAGAGAAATGAGTTTGGATGTTATGAGGGTGAACAAGAGAAAGAAACAGCGCAATGAAGTTGATGAGAAAGACGCGGTGGAGCAAGAGAAGGAAATGAAGAAGCTGGAGAGCTTTTTGTTTGGAAGCATTCATGCGCCAGTGGAGTTTGGGAAGGAGGATGAGGATGAAGCGGGAGATGCAGTGGATAATGGCTCTTCTTTGTTCTTTGTGGATCGTTCTGCAAATAATGTGCTTTCTGTTGATGAAGATGATGGAGAAGTATTGGAAGAGGAAACTAAGCAAAGGAAAGCTGTCTGGGAGGATGATGAAGAGGCAAAGGCCAACGTGAATATTGCCAAAGTTAACAGATTAAGGAAGCTGAGGAAGGAAGAGGATGAGAGTTTGATTTCTGGTTCTGAGTATGTTTCAAGATTGAGGGCTCAACATGTTAAGCTGAACCCAGGAACGGAGTGGGCTCAACTTGATTCAGAGCTAAGGAACAATAGATATTCTGACGATGAATCATCAGATGATGAAGATAGGGCAGTAGTGGCCCGTGGCTACAAGGATGTTGGAGCTGTTGATGATCTCCTTCGAACAAATGAGGATCTTGTTGTGAAGAGCAGTTCAAAACTGTTGCCTGGGCTTCTTGAATATTCAATACTGACAGATGCTAACGCAGAGGAACCTTCTAATGGTCCTATAAATTCTGTGCAGTTTCATAGAAATGCGCAGTTGCTTCTGACTGCTGGATTGGATCGAAGGCTTAGGTTTTTCCAGATTGATGGAAAACGGAATTCTAAAATTGAAAGCATATTCATTGATGACTGTCCAATTCGGAAGGCAGCCTTCTTGCCTGATGGCTCTCAGGTTATTATAGCTGGAAGGAGGAAGTTCTTTTACAGCTTTGATTTAGTGAAGGCCAAAGTTGATAGAATAGGACCCCTTGTTGGTAGAGAGGAAAAAAGCTTGGAAGTTTTTGAGGTTTCCCCTGATTCTAGTACAATTGCCTTTGTGGGCAATGAAGGATATATCTTGTTGGTTTCCTCTAAAACAAAGGAATTGATTGGGACACTGAAGATGAATGGAACTGCTCGTTCTTTAGCTTTTTCTGAAGATGGGAAGCAATTATTGAGCTCTGGCGGAGATGGACAGATTTACCACTGGGATTTGAGAACAGGAGCTTGCTTCCATAAGGCTGTTGATGAAGGTTGTATAAATGGCACTGCTCTGTGTACATCTCCAAATGGAAAACTGTTTGCTGCTGGTTCAGACAGTGGGATTGTCAATATCTACAACAGAGAGGAGTTCTTAGGGGGCAAGAGAAAACCCATCAAGACGGTCGAAAATCTCACAACCAAAAGTAGATTTTCTCAAGTTCAATACTGA

Protein Analysis

492

Amino Acids

54.91

Weight (kDa)

5.07

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 261 - 429 2.3e-06 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 262 - 466 5.1e-16 Prp19 WD40 domain
WDR55 PF24796 264 - 467 1.1e-09 WDR55
WD40_WDHD1_1st PF24817 266 - 466 3e-10 WDHD1 first WD40 domain
WD40_Gbeta PF25391 267 - 462 8.5e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 311 - 465 7.2e-08 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 344 - 429 3.8e-07 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 349 - 467 7.1e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 350 - 428 9.2e-06 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 358 - 468 2.5e-11 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 359 - 466 1.5e-09 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 822
AccII CGCG 1 cut(s) 185
AciI CCGC 3 cut(s) 185, 281, 1233
AclWI GGATC 3 cut(s) 330, 705, 855
AcsI RAATTY 2 cut(s) 796, 886
AcuI CTGAAG 2 cut(s) 1187, 1224
AfaI GTAC 2 cut(s) 1093, 1327
AfiI CCNNNNNNNGG 3 cut(s) 556, 785, 1040
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 6 cut(s) 519, 720, 743, 750, 899, 1472
AjnI CCWGG 2 cut(s) 550, 730
Alw21I GWGCWC 1 cut(s) 1229
AlwI GGATC 3 cut(s) 330, 705, 855
AoxI GGCC 3 cut(s) 429, 642, 1011
ApeKI GCWGC 2 cut(s) 935, 1352
ApoI RAATTY 2 cut(s) 796, 886
AspLEI GCGC 3 cut(s) 162, 247, 823
AspS9I GGNCC 3 cut(s) 643, 788, 1031
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 685
AvaII GGWCC 2 cut(s) 788, 1031
BanII GRGCYC 3 cut(s) 532, 568, 1229
BarI GAAGNNNNNNTAC 2 cut(s) 974, 1006
Bbv12I GWGCWC 1 cut(s) 1229
BbvCI CCTCAGC 1 cut(s) 470
BbvI GCAGC 2 cut(s) 947, 1339
BccI CCATC 7 cut(s) 101, 356, 869, 944, 1202, 1232, 1430
BciT130I CCWGG 2 cut(s) 552, 732
BfaI CTAG 1 cut(s) 1089
BisI GCNGC 2 cut(s) 936, 1353
BlsI GCNGC 2 cut(s) 937, 1354
Bme1390I CCNGG 2 cut(s) 552, 732
Bme18I GGWCC 2 cut(s) 788, 1031
BmgT120I GGNCC 3 cut(s) 643, 788, 1031
BmiI GGNNCC 3 cut(s) 63, 777, 1033
BmrFI CCNGG 2 cut(s) 552, 732
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 2 cut(s) 277, 751
BmuI ACTGGG 1 cut(s) 1264
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 3 cut(s) 470, 584, 857
Bpu14I TTCGAA 1 cut(s) 685
BpuEI CTTGAG 1 cut(s) 1449
BsaJI CCNNGG 4 cut(s) 27, 550, 646, 731
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 556, 785, 1040
Bse1I ACTGG 2 cut(s) 248, 1259
Bse3DI GCAATG 2 cut(s) 169, 1117
BseBI CCWGG 2 cut(s) 552, 732
BseDI CCNNGG 4 cut(s) 27, 550, 646, 731
BseGI GGATG 6 cut(s) 133, 274, 280, 418, 490, 664
BseLI CCNNNNNNNGG 3 cut(s) 556, 785, 1040
BseMI GCAATG 2 cut(s) 169, 1117
BseMII CTCAG 3 cut(s) 461, 498, 971
BseNI ACTGG 2 cut(s) 248, 1259
BseRI GAGGAG 1 cut(s) 1409
BseXI GCAGC 2 cut(s) 947, 1339
BsgI GTGCAG 1 cut(s) 824
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 1434
BshFI GGCC 3 cut(s) 431, 644, 1013
BsiEI CGRYCG 1 cut(s) 1434
BsiHKAI GWGCWC 1 cut(s) 1229
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 3 cut(s) 556, 785, 1040
BsmFI GGGAC 1 cut(s) 1174
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 3 cut(s) 431, 644, 1013
Bsp119I TTCGAA 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 532, 568, 1229
Bsp1407I TGTACA 1 cut(s) 1325
Bsp143I GATC 4 cut(s) 322, 676, 697, 847
BspACI CCGC 3 cut(s) 185, 281, 1233
BspANI GGCC 3 cut(s) 431, 644, 1013
BspCNI CTCAG 3 cut(s) 462, 499, 970
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 3 cut(s) 63, 777, 1033
BspPI GGATC 3 cut(s) 330, 705, 855
BspQI GCTCTTC 2 cut(s) 310, 704
BspT104I TTCGAA 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 169, 1117
BsrGI TGTACA 1 cut(s) 1325
BsrI ACTGG 2 cut(s) 248, 1259
BssECI CCNNGG 4 cut(s) 27, 550, 646, 731
BssMI GATC 4 cut(s) 322, 676, 697, 847
Bst2UI CCWGG 2 cut(s) 552, 732
Bst4CI ACNGT 5 cut(s) 726, 920, 1347, 1367, 1432
Bst6I CTCTTC 5 cut(s) 310, 372, 414, 474, 704
BstAUI TGTACA 1 cut(s) 1325
BstBI TTCGAA 1 cut(s) 685
BstC8I GCNNGC 2 cut(s) 75, 1276
BstDEI CTNAG 7 cut(s) 387, 470, 507, 584, 857, 957, 1402
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 6 cut(s) 133, 274, 280, 418, 490, 664
BstFNI CGCG 1 cut(s) 185
BstHHI GCGC 3 cut(s) 162, 247, 823
BstKTI GATC 4 cut(s) 325, 679, 700, 850
BstMBI GATC 4 cut(s) 322, 676, 697, 847
BstMCI CGRYCG 1 cut(s) 1434
BstMWI GCNNNNNNNGC 2 cut(s) 287, 641
BstNI CCWGG 2 cut(s) 552, 732
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 550, 730
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 947, 1339
BstX2I RGATCY 1 cut(s) 697
BstXI CCANNNNNNTGG 1 cut(s) 875
BstYI RGATCY 1 cut(s) 697
BsuRI GGCC 3 cut(s) 431, 644, 1013
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 6 cut(s) 133, 274, 280, 418, 490, 664
BtsI GCAGTG 2 cut(s) 297, 1314
BtsIMutI CAGTG 6 cut(s) 255, 297, 1163, 1252, 1314, 1372
Cac8I GCNNGC 2 cut(s) 75, 1276
CfoI GCGC 3 cut(s) 162, 247, 823
Cfr13I GGNCC 3 cut(s) 643, 788, 1031
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 1092, 1326
CviAII CATG 2 cut(s) 242, 536
CviQI GTAC 2 cut(s) 1092, 1326
DdeI CTNAG 7 cut(s) 387, 470, 507, 584, 857, 957, 1402
DpnI GATC 4 cut(s) 324, 678, 699, 849
DpnII GATC 4 cut(s) 322, 676, 697, 847
DraI TTTAAA 1 cut(s) 37
Eam1104I CTCTTC 5 cut(s) 310, 372, 414, 474, 704
EarI CTCTTC 5 cut(s) 310, 372, 414, 474, 704
EciI GGCGGA 1 cut(s) 1248
Ecl136II GAGCTC 1 cut(s) 1227
Eco24I GRGCYC 3 cut(s) 532, 568, 1229
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 788, 1031
Eco53kI GAGCTC 1 cut(s) 1227
Eco57I CTGAAG 2 cut(s) 1187, 1224
EcoICRI GAGCTC 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 1031
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 2 cut(s) 550, 730
EcoRV GATATC 1 cut(s) 12
EcoT38I GRGCYC 3 cut(s) 532, 568, 1229
FaeI CATG 2 cut(s) 245, 539
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FaqI GGGAC 1 cut(s) 1174
FatI CATG 2 cut(s) 241, 535
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 936, 1353
FokI GGATG 6 cut(s) 140, 281, 287, 425, 497, 671
FriOI GRGCYC 3 cut(s) 532, 568, 1229
Fsp4HI GCNGC 2 cut(s) 936, 1353
FspBI CTAG 1 cut(s) 1089
FspI TGCGCA 1 cut(s) 822
GlaI GCGC 3 cut(s) 161, 246, 822
GluI GCNGC 2 cut(s) 936, 1353
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 3 cut(s) 431, 644, 1013
HgaI GACGC 1 cut(s) 191
HhaI GCGC 3 cut(s) 162, 247, 823
Hin1II CATG 2 cut(s) 245, 539
Hin6I GCGC 3 cut(s) 160, 245, 821
HinP1I GCGC 3 cut(s) 160, 245, 821
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 3 cut(s) 575, 611, 1085
HpaI GTTAAC 1 cut(s) 454
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 142, 454, 1326
Hpy188I TCNGA 8 cut(s) 508, 580, 604, 619, 834, 930, 1204, 1363
Hpy188III TCNNGA 5 cut(s) 65, 519, 740, 868, 1426
Hpy8I GTNNAC 3 cut(s) 142, 454, 1326
HpyCH4III ACNGT 5 cut(s) 726, 920, 1347, 1367, 1432
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 85, 290, 332, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 641
HpyF3I CTNAG 7 cut(s) 387, 470, 507, 584, 857, 957, 1402
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 2 cut(s) 245, 539
HspAI GCGC 3 cut(s) 160, 245, 821
KspAI GTTAAC 1 cut(s) 454
Kzo9I GATC 4 cut(s) 322, 676, 697, 847
LguI GCTCTTC 2 cut(s) 310, 704
LmnI GCTCC 3 cut(s) 190, 665, 1271
Lsp1109I GCAGC 2 cut(s) 947, 1339
LweI GCATC 2 cut(s) 277, 751
MaeI CTAG 1 cut(s) 1089
MaeII ACGT 1 cut(s) 435
MalI GATC 4 cut(s) 324, 678, 699, 849
MboI GATC 4 cut(s) 322, 676, 697, 847
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 3 cut(s) 532, 568, 1229
MluCI AATT 7 cut(s) 796, 886, 894, 924, 1095, 1151, 1217
MmeI TCCRAC 2 cut(s) 66, 643
MseI TTAA 4 cut(s) 36, 453, 461, 540
MslI CAYNNNNRTG 1 cut(s) 816
MspR9I CCNGG 2 cut(s) 552, 732
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 2 cut(s) 552, 732
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 287, 641
NdeII GATC 4 cut(s) 322, 676, 697, 847
NlaIII CATG 2 cut(s) 245, 539
NlaIV GGNNCC 3 cut(s) 63, 777, 1033
NmeAIII GCCGAG 1 cut(s) 8
NsbI TGCGCA 1 cut(s) 822
NspI RCATGY 1 cut(s) 539
NspV TTCGAA 1 cut(s) 685
PciI ACATGT 1 cut(s) 535
PciSI GCTCTTC 2 cut(s) 310, 704
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 3 cut(s) 575, 611, 1085
PkrI GCNGC 2 cut(s) 937, 1354
PpuMI RGGWCCY 1 cut(s) 1031
PscI ACATGT 1 cut(s) 535
Psp124BI GAGCTC 1 cut(s) 1229
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 2 cut(s) 550, 730
PspGI CCWGG 2 cut(s) 550, 730
PspN4I GGNNCC 3 cut(s) 63, 777, 1033
PspPI GGNCC 3 cut(s) 643, 788, 1031
PspPPI RGGWCCY 1 cut(s) 1031
PsuI RGATCY 1 cut(s) 697
RsaI GTAC 2 cut(s) 1093, 1327
RsaNI GTAC 2 cut(s) 1092, 1326
RseI CAYNNNNRTG 1 cut(s) 816
SacI GAGCTC 1 cut(s) 1229
SapI GCTCTTC 2 cut(s) 310, 704
SaqAI TTAA 4 cut(s) 36, 453, 461, 540
SatI GCNGC 2 cut(s) 936, 1353
Sau3AI GATC 4 cut(s) 322, 676, 697, 847
Sau96I GGNCC 3 cut(s) 643, 788, 1031
ScrFI CCNGG 2 cut(s) 552, 732
SduI GDGCHC 3 cut(s) 532, 568, 1229
SfaNI GCATC 2 cut(s) 277, 751
SfuI TTCGAA 1 cut(s) 685
SinI GGWCC 2 cut(s) 788, 1031
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 1464
SmoI CTYRAG 1 cut(s) 1464
Sse9I AATT 7 cut(s) 796, 886, 894, 924, 1095, 1151, 1217
SsiI CCGC 3 cut(s) 185, 281, 1233
SspI AATATT 3 cut(s) 22, 442, 746
SspMI CTAG 1 cut(s) 1089
SstI GAGCTC 1 cut(s) 1229
StyD4I CCNGG 2 cut(s) 550, 730
TaaI ACNGT 5 cut(s) 726, 920, 1347, 1367, 1432
TaiI ACGT 1 cut(s) 438
TaqI TCGA 3 cut(s) 685, 850, 1434
TasI AATT 7 cut(s) 796, 886, 894, 924, 1095, 1151, 1217
TatI WGTACW 2 cut(s) 1091, 1325
TfiI GAWTC 3 cut(s) 575, 611, 1085
Tru1I TTAA 4 cut(s) 36, 453, 461, 540
Tru9I TTAA 4 cut(s) 36, 453, 461, 540
TscAI CASTG 6 cut(s) 255, 297, 1170, 1259, 1321, 1372
TseI GCWGC 2 cut(s) 935, 1352
TspGWI ACGGA 2 cut(s) 572, 898
TspRI CASTG 6 cut(s) 255, 297, 1170, 1259, 1321, 1372
VpaK11BI GGWCC 2 cut(s) 788, 1031
XapI RAATTY 2 cut(s) 796, 886
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XspI CTAG 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.