RchiOBHm_Chr7g0205871

U3 small nucleolar RNA-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
23614116 .. 23615698
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18421

Sequence Viewer

Length: 1287 bp
ATGGATGAGGAAGAGGAAAAGGCCAACATTAATATCGCTAGGGTTAATAGATTGAGGAAGCTGAGGAAGGAAGAGGATGAGAATTTTATTTCTGGTTCTGAGTATGTTTTACAATTAAGGGCTCAGCATGCTAAGCTGAATCCAGGTACAGAATGGTCTCAATTTGATTCACAGTCGAGGTACAATAGATACTCTGATGATGAATCCTCCGATGAAGAAAATAGCTTAGTAGTGCCCCGTGGCTACAAGGAGGTTGGAGCTGTTGATGATCTCCTTCGTACAAATGTGGACCTTGTTGTGAAGAGTGGTGGAAAGTTGCTGCCTGGACTTCTTGAATATTCAACACTTGTGGATGCAAATGCAGAGGAACCATGTAATGGTCCAATTAATTCGGTGCAATTTCATAGAAATGCTCAGTTGCTTCTTGCTGCTGGATTGGATCGAACGCTTAGATTTTTTCAGATTGATGGCAAACGGAATACTAAAATTGAAAGCATTTTCATTGATGATATTCCCATACGGAAGGCAGCTTTCTTGCCTGATGGTTCTCAGGTTATTATAGCTGGAAGGAGGAAATTCTTCTATAGTTTTGATTTAGTAAAGGCGAAAGTTGATAAAATAGGTCCCCTGGTTGGTAGAGAAGAGAAAAGCTTGGAAGTTTTTGAGGTTTCCCCTGATTCAAGTACGATCGCGTTCGTGGGAAATGAAGGTTATATCTTATTGGTTTCCACTAAAACAAAGGAATTGATTGGGACACTCAAGATGAATGGAACAGTTCGCTCTTTAGCTTTTTCCAATGATGGGAAGCAACTATTGAGCTCTGGTGGAGATGGACAGGTTTACCAGTGGGATCTGAGAACAGGGGCCTGCTTCCATAAAATGGTTGATGAAGGTTGTATCAATGGTACAGCCCTTTGTACATCTCCAAATGGATCCTTGTTTGCTGCTGGTTCAGACAGTGGGATTGTTAATATTTATAATAGAGATGAGGTTTTAGGAGGCAAAAGAAAACCAATCAAGACTATCGAGAATCTTACAACCAAAGTAGATTTTATGAAGTTCAATAATGATGCTCAAATTTTAGCTATTTGTTCGAGCATGAAGAAGGACAGCTTAAAGTTGGTACATGTTCCATCATACACTGTATTTTCCAACTGGCCTCCTCAAAGGCAGGGCCTGCATTATCCTCGCTGTTTGGATTTTAGTCCCGGTGGAGGTTTCATGGCTGTGGGCAATGCTGCTGGAAAAGTGTTGTTGTACAAGTTGCATCATTACCATCATGCATAG

Protein Analysis

428

Amino Acids

47.52

Weight (kDa)

6.77

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_EML PF23409 125 - 321 1.1e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19 PF24814 127 - 365 2.2e-20 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 127 - 294 7e-07 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 132 - 326 4.4e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 175 - 423 1.3e-12 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 183 - 294 1.8e-07 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 195 - 385 2.3e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 208 - 294 1.6e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 214 - 294 4e-07 WDR3 first beta-propeller domain
WDR55 PF24796 221 - 365 8.5e-09 WDR55
Beta-prop_THOC3 PF25174 222 - 404 2e-18 THOC3 beta-propeller domain
WD40 PF00400 249 - 284 4.4e-06 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 270 - 366 1e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML_2 PF23414 304 - 423 5.6e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
AccB7I CCANNNNNTGG 2 cut(s) 377, 880
AccII CGCG 1 cut(s) 692
AclWI GGATC 4 cut(s) 447, 858, 927, 940
AcsI RAATTY 3 cut(s) 82, 575, 1077
AfaI GTAC 8 cut(s) 148, 182, 280, 685, 907, 919, 1125, 1259
AfiI CCNNNNNNNGG 5 cut(s) 377, 632, 801, 880, 1214
AflIII ACRYGT 1 cut(s) 1126
AgsI TTSAA 5 cut(s) 335, 342, 491, 681, 1063
AjnI CCWGG 3 cut(s) 142, 322, 627
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 4 cut(s) 447, 858, 927, 940
AlwNI CAGNNNCTG 1 cut(s) 1177
AoxI GGCC 4 cut(s) 21, 864, 1157, 1174
ApeKI GCWGC 5 cut(s) 319, 428, 527, 944, 1238
ApoI RAATTY 3 cut(s) 82, 575, 1077
AseI ATTAAT 2 cut(s) 30, 387
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 5 cut(s) 289, 380, 623, 864, 1174
AsuC2I CCSGG 1 cut(s) 1209
AvaII GGWCC 3 cut(s) 289, 380, 623
BaeGI GKGCMC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 932
BanII GRGCYC 2 cut(s) 124, 821
Bbv12I GWGCWC 1 cut(s) 821
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 5 cut(s) 306, 415, 539, 931, 1225
BccI CCATC 6 cut(s) 461, 536, 794, 824, 1141, 1284
BcgI CGANNNNNNTGC 2 cut(s) 1169, 1203
BciT130I CCWGG 3 cut(s) 144, 324, 629
BcnI CCSGG 1 cut(s) 1209
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 583
BisI GCNGC 5 cut(s) 320, 429, 528, 945, 1239
BlpI GCTNAGC 2 cut(s) 123, 132
BlsI GCNGC 5 cut(s) 321, 430, 529, 946, 1240
Bme1390I CCNGG 4 cut(s) 144, 324, 629, 1209
Bme18I GGWCC 3 cut(s) 289, 380, 623
BmgT120I GGNCC 5 cut(s) 289, 380, 623, 864, 1174
BmiI GGNNCC 4 cut(s) 369, 625, 865, 934
BmrFI CCNGG 4 cut(s) 144, 324, 629, 1209
BmsI GCATC 3 cut(s) 343, 1060, 1276
Bpu10I CCTNAGC 1 cut(s) 62
Bpu1102I GCTNAGC 2 cut(s) 123, 132
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 1209
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 238, 627
Bsc4I CCNNNNNNNGG 5 cut(s) 377, 632, 801, 880, 1214
Bse1I ACTGG 2 cut(s) 844, 1160
Bse3DI GCAATG 1 cut(s) 1240
BseBI CCWGG 3 cut(s) 144, 324, 629
BseDI CCNNGG 2 cut(s) 238, 627
BseGI GGATG 3 cut(s) 10, 82, 358
BseLI CCNNNNNNNGG 5 cut(s) 377, 632, 801, 880, 1214
BseMI GCAATG 1 cut(s) 1240
BseMII CTCAG 6 cut(s) 53, 90, 137, 428, 563, 845
BseNI ACTGG 2 cut(s) 844, 1160
BseRI GAGGAG 1 cut(s) 1152
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 5 cut(s) 306, 415, 539, 931, 1225
Bsh1236I CGCG 1 cut(s) 692
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 4 cut(s) 23, 866, 1159, 1176
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 1 cut(s) 1209
BslFI GGGAC 3 cut(s) 609, 766, 1191
BslI CCNNNNNNNGG 5 cut(s) 377, 632, 801, 880, 1214
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 3 cut(s) 609, 766, 1191
BsnI GGCC 4 cut(s) 23, 866, 1159, 1176
Bso31I GGTCTC 1 cut(s) 162
Bsp1286I GDGCHC 3 cut(s) 124, 237, 821
Bsp1407I TGTACA 2 cut(s) 917, 1257
Bsp143I GATC 5 cut(s) 268, 439, 687, 850, 932
Bsp1720I GCTNAGC 2 cut(s) 123, 132
BspANI GGCC 4 cut(s) 23, 866, 1159, 1176
BspCNI CTCAG 6 cut(s) 54, 91, 136, 427, 562, 846
BspFNI CGCG 1 cut(s) 692
BspLI GGNNCC 4 cut(s) 369, 625, 865, 934
BspPI GGATC 4 cut(s) 447, 858, 927, 940
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 1240
BsrGI TGTACA 2 cut(s) 917, 1257
BsrI ACTGG 2 cut(s) 844, 1160
BssECI CCNNGG 2 cut(s) 238, 627
BssMI GATC 5 cut(s) 268, 439, 687, 850, 932
Bst2UI CCWGG 3 cut(s) 144, 324, 629
Bst4CI ACNGT 4 cut(s) 174, 775, 959, 1144
Bst6I CTCTTC 4 cut(s) 6, 66, 296, 636
BstAPI GCANNNNNTGC 1 cut(s) 1177
BstAUI TGTACA 2 cut(s) 917, 1257
BstC8I GCNNGC 3 cut(s) 129, 868, 1178
BstDEI CTNAG 9 cut(s) 62, 99, 123, 132, 226, 414, 449, 549, 854
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 10, 82, 358
BstFNI CGCG 1 cut(s) 692
BstKTI GATC 5 cut(s) 271, 442, 690, 853, 935
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 5 cut(s) 268, 439, 687, 850, 932
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 3 cut(s) 128, 133, 1177
BstNI CCWGG 3 cut(s) 144, 324, 629
BstNSI RCATGY 2 cut(s) 131, 1130
BstSCI CCNGG 4 cut(s) 142, 322, 627, 1207
BstSFI CTRYAG 1 cut(s) 583
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 5 cut(s) 306, 415, 539, 931, 1225
BstX2I RGATCY 2 cut(s) 850, 932
BstYI RGATCY 2 cut(s) 850, 932
BsuRI GGCC 4 cut(s) 23, 866, 1159, 1176
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 10, 82, 358
BtsIMutI CAGTG 3 cut(s) 851, 964, 1140
Cac8I GCNNGC 3 cut(s) 129, 868, 1178
CaiI CAGNNNCTG 1 cut(s) 1177
Cfr13I GGNCC 5 cut(s) 289, 380, 623, 864, 1174
Csp6I GTAC 8 cut(s) 147, 181, 279, 684, 906, 918, 1124, 1258
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 6 cut(s) 128, 372, 1099, 1127, 1222, 1280
CviQI GTAC 8 cut(s) 147, 181, 279, 684, 906, 918, 1124, 1258
DdeI CTNAG 9 cut(s) 62, 99, 123, 132, 226, 414, 449, 549, 854
DpnI GATC 5 cut(s) 270, 441, 689, 852, 934
DpnII GATC 5 cut(s) 268, 439, 687, 850, 932
Eam1104I CTCTTC 4 cut(s) 6, 66, 296, 636
EarI CTCTTC 4 cut(s) 6, 66, 296, 636
Ecl136II GAGCTC 1 cut(s) 819
Eco24I GRGCYC 2 cut(s) 124, 821
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 3 cut(s) 289, 380, 623
Eco53kI GAGCTC 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 819
EcoO109I RGGNCCY 3 cut(s) 623, 864, 1174
EcoRII CCWGG 3 cut(s) 142, 322, 627
EcoT22I ATGCAT 1 cut(s) 1285
EcoT38I GRGCYC 2 cut(s) 124, 821
FaeI CATG 6 cut(s) 131, 375, 1102, 1130, 1225, 1283
FalI AAGNNNNNCTT 2 cut(s) 1097, 1129
FaqI GGGAC 3 cut(s) 609, 766, 1191
FatI CATG 6 cut(s) 127, 371, 1098, 1126, 1221, 1279
Fnu4HI GCNGC 5 cut(s) 320, 429, 528, 945, 1239
FokI GGATG 3 cut(s) 17, 89, 365
FriOI GRGCYC 2 cut(s) 124, 821
Fsp4HI GCNGC 5 cut(s) 320, 429, 528, 945, 1239
FspBI CTAG 1 cut(s) 39
GluI GCNGC 5 cut(s) 320, 429, 528, 945, 1239
HaeIII GGCC 4 cut(s) 23, 866, 1159, 1176
HapII CCGG 1 cut(s) 1209
Hin1II CATG 6 cut(s) 131, 375, 1102, 1130, 1225, 1283
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 5 cut(s) 139, 167, 203, 677, 1030
HpaII CCGG 1 cut(s) 1209
Hpy166II GTNNAC 2 cut(s) 289, 841
Hpy188I TCNGA 6 cut(s) 100, 196, 211, 462, 855, 955
Hpy188III TCNNGA 4 cut(s) 332, 760, 1018, 1027
Hpy8I GTNNAC 2 cut(s) 289, 841
HpyAV CCTTC 7 cut(s) 61, 284, 517, 561, 701, 884, 1099
HpyCH4III ACNGT 4 cut(s) 174, 775, 959, 1144
HpyCH4V TGCA 6 cut(s) 356, 362, 397, 1180, 1267, 1283
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 133, 1177
HpyF3I CTNAG 9 cut(s) 62, 99, 123, 132, 226, 414, 449, 549, 854
Hsp92II CATG 6 cut(s) 131, 375, 1102, 1130, 1225, 1283
Kzo9I GATC 5 cut(s) 268, 439, 687, 850, 932
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 5 cut(s) 306, 415, 539, 931, 1225
LweI GCATC 3 cut(s) 343, 1060, 1276
MaeI CTAG 1 cut(s) 39
MalI GATC 5 cut(s) 270, 441, 689, 852, 934
MboI GATC 5 cut(s) 268, 439, 687, 850, 932
MboII GAAGA 7 cut(s) 23, 83, 227, 313, 571, 653, 1114
MflI RGATCY 2 cut(s) 850, 932
MhlI GDGCHC 3 cut(s) 124, 237, 821
MmeI TCCRAC 2 cut(s) 235, 1176
Mph1103I ATGCAT 1 cut(s) 1285
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 6 cut(s) 30, 45, 116, 387, 969, 1115
MslI CAYNNNNRTG 2 cut(s) 408, 1226
MspI CCGG 1 cut(s) 1209
MspR9I CCNGG 4 cut(s) 144, 324, 629, 1209
MvaI CCWGG 3 cut(s) 144, 324, 629
MvnI CGCG 1 cut(s) 692
MwoI GCNNNNNNNGC 3 cut(s) 128, 133, 1177
NciI CCSGG 1 cut(s) 1209
NdeII GATC 5 cut(s) 268, 439, 687, 850, 932
NlaIII CATG 6 cut(s) 131, 375, 1102, 1130, 1225, 1283
NlaIV GGNNCC 4 cut(s) 369, 625, 865, 934
NsiI ATGCAT 1 cut(s) 1285
NspI RCATGY 2 cut(s) 131, 1130
PaeI GCATGC 1 cut(s) 131
PciI ACATGT 1 cut(s) 1126
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 5 cut(s) 139, 167, 203, 677, 1030
PflMI CCANNNNNTGG 2 cut(s) 377, 880
PkrI GCNGC 5 cut(s) 321, 430, 529, 946, 1240
Ple19I CGATCG 1 cut(s) 690
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 1 cut(s) 1126
PshBI ATTAAT 2 cut(s) 30, 387
PsiI TTATAA 1 cut(s) 978
Psp124BI GAGCTC 1 cut(s) 821
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 3 cut(s) 142, 322, 627
PspGI CCWGG 3 cut(s) 142, 322, 627
PspN4I GGNNCC 4 cut(s) 369, 625, 865, 934
PspPI GGNCC 5 cut(s) 289, 380, 623, 864, 1174
PspPPI RGGWCCY 1 cut(s) 623
PstNI CAGNNNCTG 1 cut(s) 1177
PsuI RGATCY 2 cut(s) 850, 932
PvuI CGATCG 1 cut(s) 690
RsaI GTAC 8 cut(s) 148, 182, 280, 685, 907, 919, 1125, 1259
RsaNI GTAC 8 cut(s) 147, 181, 279, 684, 906, 918, 1124, 1258
RseI CAYNNNNRTG 2 cut(s) 408, 1226
SacI GAGCTC 1 cut(s) 821
SaqAI TTAA 6 cut(s) 30, 45, 116, 387, 969, 1115
SatI GCNGC 5 cut(s) 320, 429, 528, 945, 1239
Sau3AI GATC 5 cut(s) 268, 439, 687, 850, 932
Sau96I GGNCC 5 cut(s) 289, 380, 623, 864, 1174
ScrFI CCNGG 4 cut(s) 144, 324, 629, 1209
SduI GDGCHC 3 cut(s) 124, 237, 821
SfaNI GCATC 3 cut(s) 343, 1060, 1276
SfcI CTRYAG 1 cut(s) 583
SinI GGWCC 3 cut(s) 289, 380, 623
SmiMI CAYNNNNRTG 2 cut(s) 408, 1226
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
SphI GCATGC 1 cut(s) 131
SspI AATATT 2 cut(s) 338, 973
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 821
StyD4I CCNGG 4 cut(s) 142, 322, 627, 1207
TaaI ACNGT 4 cut(s) 174, 775, 959, 1144
TaqI TCGA 4 cut(s) 176, 442, 1026, 1094
TatI WGTACW 2 cut(s) 917, 1257
TfiI GAWTC 5 cut(s) 139, 167, 203, 677, 1030
Tru1I TTAA 6 cut(s) 30, 45, 116, 387, 969, 1115
Tru9I TTAA 6 cut(s) 30, 45, 116, 387, 969, 1115
TscAI CASTG 3 cut(s) 851, 964, 1147
TseI GCWGC 5 cut(s) 319, 428, 527, 944, 1238
TspGWI ACGGA 2 cut(s) 490, 535
TspRI CASTG 3 cut(s) 851, 964, 1147
Van91I CCANNNNNTGG 2 cut(s) 377, 880
VpaK11BI GGWCC 3 cut(s) 289, 380, 623
VspI ATTAAT 2 cut(s) 30, 387
XapI RAATTY 3 cut(s) 82, 575, 1077
XceI RCATGY 2 cut(s) 131, 1130
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.