Prupe.8G231800_v2.0.a1

U3 small nucleolar RNA-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20623325 .. 20626085
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G231800.1

Sequence Viewer

Length: 1692 bp
ATGAGTTTAATATCACAGAATGTTCCTTCGGCTTTTAAAGCCAACAAGACTAAAAGGGATGATGTTGATGAGCCTTCATTTCTGCAAGGGAATGATGACAATGGAAATGGAAAACAATCTAACTTAGATATTATGAAAACGAAGAAGCGAAAGAAAGCACACAAGGAGGAGGATGAGAAAGTGGCTATTGAGCAAGAGAAGGAAATGAAGAAGCTGGAAAACTTTTTGTTTGGAGCCATTTATTCCCCACTTGAGTTTGGAAAGGAGGATGAGGAAGAAGTTGGAGATGCAGTGGATAAAGGTTTTTTGTTCTTTGTGGACCGTTCGGCCAATAGTGTGCTCTCGGTGCATGAAGAGGATGGAGAGTTATCGGAAGAGGAAACTAGGCAAAGGAAACCTGTCTGGGTGGATGAGGAAGAGGAAAAGACCAATATAAATATTGCTAAAGTTAACAGATTAAGGAAGCTGAGGAAGGAGGAGGATGAGAGTTTGATTTCTGGTTCAGATTATGTCTCAAGATTGAGGGCTCAACATGCTAAGCTGAACCCTGGGACAGAATGGGCTCAGCTTGATCCACAGTTGAGGAACAGTAGATATTCTGATGATGAATCATCAGATGATGAAAATGGGGTAGCAGTGGCCCGTGGCTACAAGGGTGTAGACGCTGTTGATGATCTCCTTCGAACAAATGAGGATCTTGTTGTGAAGAGCAGTGCAAAATTGTTGCCTGGACTTCTTGAATATTCAGTACTTGTACATGCAAATGCAGAGGAACCTTCTAAAGGACCAATAAATTCAGTGCAGTTTCATAGAAATGGGCAGTTGCTTCTTACTGCTGGATTGGATCGAAGGCTTAGGTTTTTTCAGATTGATGGCAAGCGCAATACTAAAATAGAGAGCATCTTTCTTGATGACTGTCCCGTTCGGAAGGCGTCCTTTTTGCCTGATGGCTCTCAGGTTATTATAGCTGGAAGGAGGAACTTCTTTTACAGCTTTGACTTGGTGAAGGCAAAAGTTGATAAAATAGGTCCCTTGGTTGGTCGAGAGGAGAAAAGCTTGGAGGTTTTTGAGGTTTCCCCTGATTCTAGTACAATTGCCTTTGTGGGAAATGAAGGTTATATCTTGTTGGTTTCGTCTAAAACAAAAGAATTGATTGGGACATTAAAGATGAATGGAACCGTTCGTTCTTTAGCTTTTGCCGATGATGGGAAGCAATTGTTGAGCTCTGGTGGAGATGGACAGGTTTACCACTGGGATCTCAGAACAGGGGCTTGCCTCCATAAGGCTGTTGATGAAGGTTGTATAAATGGTACATCTCTTTGTACATCTCCAAATGGAGCATTGTTTGCTGCTGGTTCAGACAGTGGGATTGTCAATATTTACAACAACGAGGAGTTTTTGGGTGGCAAGAGAAAACCCATCAAGACCATCGAGAATCTTACGACGAAAGTAGATTTTCTGAAGTTCAACAGCGATGCTCAAATATTGGCCATTTGTTCGAGCATGAAGAAGAACAGCTTAAAGTTGATACATGTTCCATCATTTACTGTTTTCTCAAACTGGCCTCCGCAGAAGAAGGCCCTTCACTATCCTCGCTGCTTGGATTTTAGCCCTGGTGGAGGTTTCATGGCTGTAGGAAATGCTGCTGGAAAAGTTTTATTGTACAAGTTGCACCATTACCATCATGCATAG

Protein Analysis

564

Amino Acids

62.61

Weight (kDa)

5.99

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 660
AciI CCGC 1 cut(s) 1568
AclWI GGATC 4 cut(s) 566, 702, 852, 1263
AcoI YGGCCR 2 cut(s) 327, 1488
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 1 cut(s) 1481
AcyI GRCGYC 1 cut(s) 932
AfaI GTAC 6 cut(s) 750, 756, 1090, 1312, 1324, 1664
AfiI CCNNNNNNNGG 5 cut(s) 782, 1037, 1206, 1282, 1619
AflIII ACRYGT 1 cut(s) 1531
AgsI TTSAA 2 cut(s) 740, 1468
AjnI CCWGG 3 cut(s) 547, 727, 1612
Alw21I GWGCWC 2 cut(s) 342, 1226
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 4 cut(s) 566, 702, 852, 1263
AoxI GGCC 5 cut(s) 327, 639, 1488, 1562, 1578
ApeKI GCWGC 3 cut(s) 1349, 1596, 1643
ApoI RAATTY 1 cut(s) 793
AspLEI GCGC 1 cut(s) 882
AspS9I GGNCC 5 cut(s) 319, 640, 785, 1028, 1579
AsuHPI GGTGA 1 cut(s) 1015
AsuII TTCGAA 1 cut(s) 682
AvaII GGWCC 3 cut(s) 319, 785, 1028
BalI TGGCCA 1 cut(s) 1490
BanII GRGCYC 3 cut(s) 529, 565, 1226
Bbv12I GWGCWC 2 cut(s) 342, 1226
BbvCI CCTCAGC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 1336, 1583, 1630
BccI CCATC 9 cut(s) 353, 866, 941, 1199, 1229, 1427, 1436, 1546, 1689
BciT130I CCWGG 3 cut(s) 549, 729, 1614
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 2 cut(s) 384, 1086
BfmI CTRYAG 1 cut(s) 1632
BisI GCNGC 3 cut(s) 1350, 1597, 1644
BlpI GCTNAGC 2 cut(s) 537, 564
BlsI GCNGC 3 cut(s) 1351, 1598, 1645
BmcAI AGTACT 1 cut(s) 750
Bme1390I CCNGG 3 cut(s) 549, 729, 1614
Bme18I GGWCC 3 cut(s) 319, 785, 1028
BmgT120I GGNCC 5 cut(s) 319, 640, 785, 1028, 1579
BmiI GGNNCC 4 cut(s) 235, 774, 1030, 1177
BmrFI CCNGG 3 cut(s) 549, 729, 1614
BmrI ACTGGG 1 cut(s) 1261
BmsI GCATC 3 cut(s) 277, 909, 1465
BmuI ACTGGG 1 cut(s) 1261
Bpu10I CCTNAGC 2 cut(s) 467, 854
Bpu1102I GCTNAGC 2 cut(s) 537, 564
Bpu14I TTCGAA 1 cut(s) 682
BpuEI CTTGAG 2 cut(s) 272, 499
BsaHI GRCGYC 1 cut(s) 932
BsaJI CCNNGG 5 cut(s) 547, 548, 643, 1032, 1612
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 5 cut(s) 782, 1037, 1206, 1282, 1619
Bse1I ACTGG 2 cut(s) 1256, 1565
BseBI CCWGG 3 cut(s) 549, 729, 1614
BseDI CCNNGG 5 cut(s) 547, 548, 643, 1032, 1612
BseGI GGATG 6 cut(s) 64, 178, 274, 364, 415, 487
BseLI CCNNNNNNNGG 5 cut(s) 782, 1037, 1206, 1282, 1619
BseMII CTCAG 4 cut(s) 458, 578, 968, 1273
BseNI ACTGG 2 cut(s) 1256, 1565
BseRI GAGGAG 4 cut(s) 182, 491, 1061, 1406
BseXI GCAGC 3 cut(s) 1336, 1583, 1630
BsgI GTGCAG 1 cut(s) 821
BshFI GGCC 5 cut(s) 329, 641, 1490, 1564, 1580
BsiHKAI GWGCWC 2 cut(s) 342, 1226
BslFI GGGAC 4 cut(s) 565, 903, 1014, 1171
BslI CCNNNNNNNGG 5 cut(s) 782, 1037, 1206, 1282, 1619
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 4 cut(s) 565, 903, 1014, 1171
BsnI GGCC 5 cut(s) 329, 641, 1490, 1564, 1580
Bsp119I TTCGAA 1 cut(s) 682
Bsp1286I GDGCHC 4 cut(s) 342, 529, 565, 1226
Bsp1407I TGTACA 3 cut(s) 754, 1322, 1662
Bsp143I GATC 5 cut(s) 571, 673, 694, 844, 1255
Bsp1720I GCTNAGC 2 cut(s) 537, 564
BspACI CCGC 1 cut(s) 1568
BspANI GGCC 5 cut(s) 329, 641, 1490, 1564, 1580
BspCNI CTCAG 4 cut(s) 459, 577, 967, 1272
BspLI GGNNCC 4 cut(s) 235, 774, 1030, 1177
BspPI GGATC 4 cut(s) 566, 702, 852, 1263
BspQI GCTCTTC 1 cut(s) 701
BspT104I TTCGAA 1 cut(s) 682
BsrGI TGTACA 3 cut(s) 754, 1322, 1662
BsrI ACTGG 2 cut(s) 1256, 1565
BssECI CCNNGG 5 cut(s) 547, 548, 643, 1032, 1612
BssMI GATC 5 cut(s) 571, 673, 694, 844, 1255
BssNI GRCGYC 1 cut(s) 932
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 3 cut(s) 549, 729, 1614
Bst4CI ACNGT 7 cut(s) 323, 579, 590, 917, 1180, 1364, 1549
Bst6I CTCTTC 4 cut(s) 348, 369, 411, 701
BstACI GRCGYC 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 1346
BstAUI TGTACA 3 cut(s) 754, 1322, 1662
BstBI TTCGAA 1 cut(s) 682
BstC8I GCNNGC 2 cut(s) 878, 1273
BstDEI CTNAG 7 cut(s) 124, 467, 537, 564, 854, 954, 1259
BstDSI CCRYGG 1 cut(s) 643
BstENI CCTNNNNNAGG 3 cut(s) 780, 1280, 1617
BstF5I GGATG 6 cut(s) 64, 178, 274, 364, 415, 487
BstHHI GCGC 1 cut(s) 882
BstKTI GATC 5 cut(s) 574, 676, 697, 847, 1258
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 5 cut(s) 571, 673, 694, 844, 1255
BstMWI GCNNNNNNNGC 4 cut(s) 38, 346, 533, 1346
BstNI CCWGG 3 cut(s) 549, 729, 1614
BstNSI RCATGY 3 cut(s) 536, 761, 1535
BstSCI CCNGG 3 cut(s) 547, 727, 1612
BstSFI CTRYAG 1 cut(s) 1632
BstV1I GCAGC 3 cut(s) 1336, 1583, 1630
BstX2I RGATCY 2 cut(s) 694, 1255
BstYI RGATCY 2 cut(s) 694, 1255
BsuRI GGCC 5 cut(s) 329, 641, 1490, 1564, 1580
BtgI CCRYGG 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 1488
BtsCI GGATG 6 cut(s) 64, 178, 274, 364, 415, 487
BtsI GCAGTG 3 cut(s) 297, 642, 718
BtsIMutI CAGTG 6 cut(s) 297, 642, 718, 804, 1249, 1369
Cac8I GCNNGC 2 cut(s) 878, 1273
CfoI GCGC 1 cut(s) 882
Cfr13I GGNCC 5 cut(s) 319, 640, 785, 1028, 1579
CseI GACGC 2 cut(s) 671, 921
Csp6I GTAC 6 cut(s) 749, 755, 1089, 1311, 1323, 1663
CviAII CATG 7 cut(s) 350, 533, 758, 1504, 1532, 1627, 1685
CviQI GTAC 6 cut(s) 749, 755, 1089, 1311, 1323, 1663
DdeI CTNAG 7 cut(s) 124, 467, 537, 564, 854, 954, 1259
DpnI GATC 5 cut(s) 573, 675, 696, 846, 1257
DpnII GATC 5 cut(s) 571, 673, 694, 844, 1255
DraI TTTAAA 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 327, 1488
Eam1104I CTCTTC 4 cut(s) 348, 369, 411, 701
EarI CTCTTC 4 cut(s) 348, 369, 411, 701
Ecl136II GAGCTC 1 cut(s) 1224
Eco130I CCWWGG 1 cut(s) 1032
Eco24I GRGCYC 3 cut(s) 529, 565, 1226
Eco47I GGWCC 3 cut(s) 319, 785, 1028
Eco53kI GAGCTC 1 cut(s) 1224
Eco57I CTGAAG 1 cut(s) 1481
EcoICRI GAGCTC 1 cut(s) 1224
EcoNI CCTNNNNNAGG 3 cut(s) 780, 1280, 1617
EcoO109I RGGNCCY 2 cut(s) 1028, 1579
EcoRII CCWGG 3 cut(s) 547, 727, 1612
EcoT14I CCWWGG 1 cut(s) 1032
EcoT22I ATGCAT 1 cut(s) 1690
EcoT38I GRGCYC 3 cut(s) 529, 565, 1226
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 7 cut(s) 353, 536, 761, 1507, 1535, 1630, 1688
FalI AAGNNNNNCTT 4 cut(s) 920, 952, 1502, 1534
FaqI GGGAC 4 cut(s) 565, 903, 1014, 1171
FatI CATG 7 cut(s) 349, 532, 757, 1503, 1531, 1626, 1684
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 1350, 1597, 1644
FokI GGATG 6 cut(s) 71, 185, 281, 371, 422, 494
FriOI GRGCYC 3 cut(s) 529, 565, 1226
Fsp4HI GCNGC 3 cut(s) 1350, 1597, 1644
FspBI CTAG 2 cut(s) 384, 1086
GlaI GCGC 1 cut(s) 881
GluI GCNGC 3 cut(s) 1350, 1597, 1644
HaeIII GGCC 5 cut(s) 329, 641, 1490, 1564, 1580
HgaI GACGC 2 cut(s) 671, 921
HhaI GCGC 1 cut(s) 882
Hin1I GRCGYC 1 cut(s) 932
Hin1II CATG 7 cut(s) 353, 536, 761, 1507, 1535, 1630, 1688
Hin6I GCGC 1 cut(s) 880
HinP1I GCGC 1 cut(s) 880
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 1054
HinfI GANTC 3 cut(s) 608, 1082, 1435
HpaI GTTAAC 1 cut(s) 451
HphI GGTGA 1 cut(s) 1015
Hpy166II GTNNAC 4 cut(s) 319, 451, 661, 1246
Hpy188I TCNGA 9 cut(s) 373, 505, 601, 616, 867, 927, 1262, 1360, 1461
Hpy188III TCNNGA 6 cut(s) 516, 737, 908, 1043, 1423, 1432
Hpy8I GTNNAC 4 cut(s) 319, 451, 661, 1246
Hpy99I CGWCG 1 cut(s) 1447
HpyCH4III ACNGT 7 cut(s) 323, 579, 590, 917, 1180, 1364, 1549
HpyCH4V TGCA 9 cut(s) 85, 290, 349, 716, 761, 767, 802, 1672, 1688
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 346, 533, 1346
HpyF3I CTNAG 7 cut(s) 124, 467, 537, 564, 854, 954, 1259
Hsp92I GRCGYC 1 cut(s) 932
Hsp92II CATG 7 cut(s) 353, 536, 761, 1507, 1535, 1630, 1688
HspAI GCGC 1 cut(s) 880
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 5 cut(s) 571, 673, 694, 844, 1255
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 2 cut(s) 233, 1337
Lsp1109I GCAGC 3 cut(s) 1336, 1583, 1630
LweI GCATC 3 cut(s) 277, 909, 1465
MaeI CTAG 2 cut(s) 384, 1086
MalI GATC 5 cut(s) 573, 675, 696, 846, 1257
MboI GATC 5 cut(s) 571, 673, 694, 844, 1255
MfeI CAATTG 2 cut(s) 1092, 1214
MflI RGATCY 2 cut(s) 694, 1255
MhlI GDGCHC 4 cut(s) 342, 529, 565, 1226
MlsI TGGCCA 1 cut(s) 1490
MluCI AATT 5 cut(s) 719, 793, 1092, 1148, 1214
MluNI TGGCCA 1 cut(s) 1490
MmeI TCCRAC 1 cut(s) 262
Mox20I TGGCCA 1 cut(s) 1490
Mph1103I ATGCAT 1 cut(s) 1690
MscI TGGCCA 1 cut(s) 1490
MseI TTAA 6 cut(s) 8, 36, 450, 458, 1163, 1520
MslI CAYNNNNRTG 2 cut(s) 762, 813
Msp20I TGGCCA 1 cut(s) 1490
MspR9I CCNGG 3 cut(s) 549, 729, 1614
MunI CAATTG 2 cut(s) 1092, 1214
MvaI CCWGG 3 cut(s) 549, 729, 1614
MwoI GCNNNNNNNGC 4 cut(s) 38, 346, 533, 1346
NdeII GATC 5 cut(s) 571, 673, 694, 844, 1255
NlaIII CATG 7 cut(s) 353, 536, 761, 1507, 1535, 1630, 1688
NlaIV GGNNCC 4 cut(s) 235, 774, 1030, 1177
NsiI ATGCAT 1 cut(s) 1690
NspI RCATGY 3 cut(s) 536, 761, 1535
NspV TTCGAA 1 cut(s) 682
PasI CCCWGGG 1 cut(s) 548
PciI ACATGT 1 cut(s) 1531
PciSI GCTCTTC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 608, 1082, 1435
PkrI GCNGC 3 cut(s) 1351, 1598, 1645
PpuMI RGGWCCY 1 cut(s) 1028
PscI ACATGT 1 cut(s) 1531
Psp124BI GAGCTC 1 cut(s) 1226
Psp5II RGGWCCY 1 cut(s) 1028
Psp6I CCWGG 3 cut(s) 547, 727, 1612
PspGI CCWGG 3 cut(s) 547, 727, 1612
PspN4I GGNNCC 4 cut(s) 235, 774, 1030, 1177
PspPI GGNCC 5 cut(s) 319, 640, 785, 1028, 1579
PspPPI RGGWCCY 1 cut(s) 1028
PsrI GAACNNNNNNTAC 2 cut(s) 971, 1003
PsuI RGATCY 2 cut(s) 694, 1255
RsaI GTAC 6 cut(s) 750, 756, 1090, 1312, 1324, 1664
RsaNI GTAC 6 cut(s) 749, 755, 1089, 1311, 1323, 1663
RseI CAYNNNNRTG 2 cut(s) 762, 813
SacI GAGCTC 1 cut(s) 1226
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 6 cut(s) 8, 36, 450, 458, 1163, 1520
SatI GCNGC 3 cut(s) 1350, 1597, 1644
Sau3AI GATC 5 cut(s) 571, 673, 694, 844, 1255
Sau96I GGNCC 5 cut(s) 319, 640, 785, 1028, 1579
ScaI AGTACT 1 cut(s) 750
ScrFI CCNGG 3 cut(s) 549, 729, 1614
SduI GDGCHC 4 cut(s) 342, 529, 565, 1226
SfaNI GCATC 3 cut(s) 277, 909, 1465
SfcI CTRYAG 1 cut(s) 1632
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 3 cut(s) 319, 785, 1028
SmiMI CAYNNNNRTG 2 cut(s) 762, 813
SmlI CTYRAG 2 cut(s) 251, 514
SmoI CTYRAG 2 cut(s) 251, 514
Sse9I AATT 5 cut(s) 719, 793, 1092, 1148, 1214
SsiI CCGC 1 cut(s) 1568
SspI AATATT 4 cut(s) 439, 743, 1378, 1485
SspMI CTAG 2 cut(s) 384, 1086
SstI GAGCTC 1 cut(s) 1226
StyD4I CCNGG 3 cut(s) 547, 727, 1612
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 7 cut(s) 323, 579, 590, 917, 1180, 1364, 1549
TaqI TCGA 5 cut(s) 682, 847, 1042, 1431, 1499
TasI AATT 5 cut(s) 719, 793, 1092, 1148, 1214
TatI WGTACW 5 cut(s) 748, 754, 1088, 1322, 1662
TfiI GAWTC 3 cut(s) 608, 1082, 1435
Tru1I TTAA 6 cut(s) 8, 36, 450, 458, 1163, 1520
Tru9I TTAA 6 cut(s) 8, 36, 450, 458, 1163, 1520
TscAI CASTG 6 cut(s) 297, 642, 718, 804, 1256, 1369
TseI GCWGC 3 cut(s) 1349, 1596, 1643
TspRI CASTG 6 cut(s) 297, 642, 718, 804, 1256, 1369
VpaK11BI GGWCC 3 cut(s) 319, 785, 1028
XagI CCTNNNNNAGG 3 cut(s) 780, 1280, 1617
XapI RAATTY 1 cut(s) 793
XceI RCATGY 3 cut(s) 536, 761, 1535
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 384, 1086
ZrmI AGTACT 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 1690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.