RLG00000014757

Calcineurin B-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004274
Physical Location & Seq
Reverse (-)
57250057 .. 57251610
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014757

Sequence Viewer

Length: 576 bp
ATGGGGTGCTTTACTTCTAAAGGGAAACGGCAATTTCCAGGATACGAGGATCCTGCCTCCCTCGCTTTACAAATAGCATTTATTGTTAGTGAAGTTGAAGCACTCTTTGAGCTATACAAGAGTATCAGCAGCTCTGTGATTGATGATGGGTTGATAAACAAGGAAAAGTTCCAGTTAGCCATTTTCAAGAATAGAAAGAAAGAAAATTTGTTTGCAAATCGGATATTTGATCTACTTGATGTGAAGAGGAAGGGTGTCATTGATTTCAATGACTTTCTCTATGACTTGGATAACACGGGCTTTATTGAGCACCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAATCTGAAATGAAACTGGCAGATGACACCATCGAGTTAATTCTTGACAAGACTTTCATGAAAGCTGATGTGAACCAAGATGGGAAAACAGACTTTTCTGAGTGGAAAAATTTTGTTTCAAAGTATCCATCATTGTTAAAGATCATGACCCTCCCCTACCTTAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAGAGGTTGATGAGATTACTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0016049 GO:0019722 GO:0019899 GO:0019900 GO:0019932 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0035556 GO:0040007 GO:0042221 GO:0042995 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0044706 GO:0046872 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090406 GO:0097305 GO:0097306 GO:0120025 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

192

Amino Acids

22.0

Weight (kDa)

4.79

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 93 - 153 9.6e-06 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 44, 57
AcsI RAATTY 2 cut(s) 205, 457
AfiI CCNNNNNNNGG 1 cut(s) 510
AgsI TTSAA 4 cut(s) 98, 187, 268, 468
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 112, 132, 413
AluI AGCT 3 cut(s) 112, 132, 413
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 2 cut(s) 44, 57
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 205, 457
AxyI CCTNAGG 1 cut(s) 509
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BamHI GGATCC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 141
BccI CCATC 4 cut(s) 140, 386, 422, 484
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 2 cut(s) 35, 483
BfuI GTATCC 2 cut(s) 35, 483
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 573
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse1I ACTGG 2 cut(s) 172, 369
Bse21I CCTNAGG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 172, 369
BseXI GCAGC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 49, 229, 489
BspCNI CTCAG 1 cut(s) 439
BspHI TCATGA 2 cut(s) 405, 492
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 44, 57
BsrI ACTGG 2 cut(s) 172, 369
BssMI GATC 3 cut(s) 49, 229, 489
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 447, 509
BstENI CCTNNNNNAGG 1 cut(s) 508
BstKTI GATC 3 cut(s) 52, 232, 492
BstMBI GATC 3 cut(s) 49, 229, 489
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 509
BsuI GTATCC 2 cut(s) 35, 483
CciI TCATGA 2 cut(s) 405, 492
CviAII CATG 2 cut(s) 406, 493
CviJI RGCY 5 cut(s) 112, 132, 179, 300, 413
CviKI_1 RGCY 5 cut(s) 112, 132, 179, 300, 413
DdeI CTNAG 2 cut(s) 447, 509
DpnI GATC 3 cut(s) 51, 231, 491
DpnII GATC 3 cut(s) 49, 229, 489
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 409, 496
FaiI YATR 4 cut(s) 115, 282, 407, 494
FatI CATG 2 cut(s) 405, 492
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
Hin1II CATG 2 cut(s) 409, 496
HinfI GANTC 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 4 cut(s) 222, 355, 448, 553
Hpy188III TCNNGA 4 cut(s) 187, 392, 406, 493
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 2 cut(s) 215, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 447, 509
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 2 cut(s) 409, 496
Kzo9I GATC 3 cut(s) 49, 229, 489
LpnPI CCDG 5 cut(s) 24, 51, 66, 185, 350
Lsp1109I GCAGC 1 cut(s) 141
MaeII ACGT 1 cut(s) 572
MalI GATC 3 cut(s) 51, 231, 491
MboI GATC 3 cut(s) 49, 229, 489
MboII GAAGA 1 cut(s) 256
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 6 cut(s) 32, 205, 333, 387, 457, 547
MnlI CCTC 7 cut(s) 40, 67, 71, 240, 310, 509, 547
MseI TTAA 4 cut(s) 332, 386, 485, 546
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 49, 229, 489
NlaIII CATG 2 cut(s) 409, 496
NlaIV GGNNCC 1 cut(s) 51
PagI TCATGA 2 cut(s) 405, 492
PfeI GAWTC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 49
SaqAI TTAA 4 cut(s) 332, 386, 485, 546
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 3 cut(s) 49, 229, 489
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 114, 134, 321, 415, 510, 558, 575
Sse9I AATT 6 cut(s) 32, 205, 333, 387, 457, 547
StyD4I CCNGG 1 cut(s) 37
TaiI ACGT 1 cut(s) 575
TaqI TCGA 1 cut(s) 381
TasI AATT 6 cut(s) 32, 205, 333, 387, 457, 547
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 4 cut(s) 332, 386, 485, 546
Tru9I TTAA 4 cut(s) 332, 386, 485, 546
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 374, 394, 422
XagI CCTNNNNNAGG 1 cut(s) 508
XapI RAATTY 2 cut(s) 205, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.