FvH4_5g20510

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
12168766 .. 12173497
4732 bp
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UTR
Exon/CDS
Intron
FvH4_5g20510.t3

Sequence Viewer

Length: 645 bp
ATGGGGTGCTTTAGTTCTAAAGGGAAGCGGCGGCAGTTTCCAGGACACGAGGATCCTGTCTCCCTCGCTTCACAAACAGCATTTACTGTTAGTGAAGTTGAAGCACTCTTTGAGCTATATAAGAGTATCAGCAGTTCTGTGGTTGATGATGGGTTGATAAATAAGGAAGAGTTCCAGTTAGCCATTTTCAAGAATAGAAAGAAAGAGAATTTGTTTGCAAATCGGATATTTGATCTGTTTGATGTGAAGAAGAAGGGTGTCATTGATTTCAGTGACTTTGTTAGATCACTGACTGTCTTCCATCCCAATGCTCCTCAAGAAGACAAGATTGATTTTTCATTTAAGCTCTATGATTTGGATAGCACGGGCTTTATTGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGCGAATCTGAAATGAAACTGGCAGATGACACCATCGAGTTAATTCTTGATAAGACTTTCACTGAAGCTGATGTCAACCAAGATGGGAAAATAGACTTATCTGAGTGGAACAATTTCGTTTCAAAGAATCCATCATTGTTAAAGATCATGACCCTCCCCTACCTTAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCTGAGGTTGATGAGATTGCTACGTGA
Functional Annotation

Protein Analysis

215

Amino Acids

24.47

Weight (kDa)

4.74

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 107 - 173 3.1e-09 EF-hand domain pair
EF-hand_5 PF13202 154 - 178 5.2e-07 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 28, 31
AclWI GGATC 2 cut(s) 47, 60
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 579
AgsI TTSAA 3 cut(s) 101, 190, 537
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 115, 346, 482
AluI AGCT 3 cut(s) 115, 346, 482
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 2 cut(s) 47, 60
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 1 cut(s) 381
AxyI CCTNAGG 1 cut(s) 578
BamHI GGATCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 289, 327
BccI CCATC 5 cut(s) 143, 309, 455, 491, 553
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 64
BfoI RGCGCY 1 cut(s) 382
BisI GCNGC 2 cut(s) 29, 32
BlsI GCNGC 2 cut(s) 30, 33
Bme1390I CCNGG 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 42
BpiI GAAGAC 2 cut(s) 289, 327
BpuEI CTTGAG 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 642
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse1I ACTGG 2 cut(s) 175, 438
Bse21I CCTNAGG 1 cut(s) 578
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMII CTCAG 2 cut(s) 507, 612
BseNI ACTGG 2 cut(s) 175, 438
BseRI GAGGAG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 579
BsmAI GTCTC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 52, 232, 284, 558
BspACI CCGC 2 cut(s) 28, 31
BspCNI CTCAG 2 cut(s) 508, 613
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 47, 60
BsrI ACTGG 2 cut(s) 175, 438
BssMI GATC 4 cut(s) 52, 232, 284, 558
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 88, 295
Bst6I CTCTTC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 642
BstDEI CTNAG 3 cut(s) 516, 578, 621
BstENI CCTNNNNNAGG 1 cut(s) 577
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 4 cut(s) 55, 235, 287, 561
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 4 cut(s) 52, 232, 284, 558
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 289, 327
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 578
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 277, 287, 474
CciI TCATGA 1 cut(s) 561
CfoI GCGC 1 cut(s) 381
CviAII CATG 1 cut(s) 562
CviJI RGCY 5 cut(s) 115, 182, 346, 369, 482
CviKI_1 RGCY 5 cut(s) 115, 182, 346, 369, 482
DdeI CTNAG 3 cut(s) 516, 578, 621
DpnI GATC 4 cut(s) 54, 234, 286, 560
DpnII GATC 4 cut(s) 52, 232, 284, 558
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 578
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 40
FaeI CATG 1 cut(s) 565
FaiI YATR 4 cut(s) 118, 120, 351, 563
FatI CATG 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 29, 32
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 29, 32
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 29, 32
HaeII RGCGCY 1 cut(s) 382
HhaI GCGC 1 cut(s) 381
Hin1II CATG 1 cut(s) 565
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 2 cut(s) 419, 541
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 4 cut(s) 225, 424, 517, 622
Hpy188III TCNNGA 4 cut(s) 190, 317, 461, 562
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 88, 295
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 2 cut(s) 218, 407
HpyF3I CTNAG 3 cut(s) 516, 578, 621
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 1 cut(s) 565
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 4 cut(s) 52, 232, 284, 558
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 5 cut(s) 27, 54, 69, 188, 419
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 1 cut(s) 272
MalI GATC 4 cut(s) 54, 234, 286, 560
MboI GATC 4 cut(s) 52, 232, 284, 558
MboII GAAGA 5 cut(s) 179, 259, 262, 289, 332
MflI RGATCY 1 cut(s) 52
MluCI AATT 5 cut(s) 208, 402, 456, 526, 616
MnlI CCTC 6 cut(s) 43, 74, 324, 379, 578, 616
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 5 cut(s) 342, 401, 455, 554, 615
MslI CAYNNNNRTG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
NdeII GATC 4 cut(s) 52, 232, 284, 558
NlaIII CATG 1 cut(s) 565
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 272
PagI TCATGA 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 419, 541
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 2 cut(s) 30, 33
Ppu21I YACGTR 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 54
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 5 cut(s) 342, 401, 455, 554, 615
SatI GCNGC 2 cut(s) 29, 32
Sau3AI GATC 4 cut(s) 52, 232, 284, 558
ScrFI CCNGG 1 cut(s) 42
SetI ASST 7 cut(s) 117, 348, 390, 484, 579, 627, 644
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 5 cut(s) 208, 402, 456, 526, 616
SsiI CCGC 2 cut(s) 28, 31
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 88, 295
TaiI ACGT 1 cut(s) 644
TaqI TCGA 1 cut(s) 450
TasI AATT 5 cut(s) 208, 402, 456, 526, 616
TauI GCSGC 2 cut(s) 31, 34
TfiI GAWTC 2 cut(s) 419, 541
Tru1I TTAA 5 cut(s) 342, 401, 455, 554, 615
Tru9I TTAA 5 cut(s) 342, 401, 455, 554, 615
TscAI CASTG 3 cut(s) 277, 294, 481
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 327, 443
TspRI CASTG 3 cut(s) 277, 294, 481
XagI CCTNNNNNAGG 1 cut(s) 577
XapI RAATTY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.