RLG00000018598

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
32355708 .. 32356962
1255 bp
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UTR
Exon/CDS
Intron
RLM00000018598

Sequence Viewer

Length: 636 bp
ATGGGGTGCTTTACTTCTAAAGGGAAACGGCAATTTCCAGGATACGAGGATTCTGCCTCCCTCGCTTCACAAACAGCATATATTGTTAGTGAAGTTGAAGCACTCTTTGAGTTATACAAGAGTATCAGCAGTTCTGTGATTGATGATGGGTTGATAAACAAGGAAGACTTCCAGTTAGCCATTTTCAAGAATAGAAAGAAAGAAAATTTGTTTGCAAATTGGATATTTGATCTATTTGATGTGAAGAGGAAGGTGTCATTGATTTCAATGACTTTGTCACTGACTGTCTTCCATCTCAATGCCCCACAAGAAGACAAGATCGATTTTCCATTTAAGCTCTATGACTTGGATAACACGGGCTTTATTGAGGGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAATCTGAAATGAAACTGGCAGATGACACCATCGAGTTAATTCTTGATAAGACTTTCATGGAAGTTGATGTGAACCAAGATGGGAAAATAGACTTTTCTGAGTGGAAAAATTTTGTTTCAAAGTATCCATCATTGTTAAAGATCATGACCCTCCCCTACCTTAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAAAGGTTGATGAGATTGCTACGTGA
Functional Annotation

Protein Analysis

212

Amino Acids

24.22

Weight (kDa)

4.68

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 109 - 174 1.7e-09 EF-hand domain pair
EF-hand_1 PF00036 151 - 177 2.7e-07 EF hand domain
EF-hand_5 PF13202 151 - 175 9.2e-08 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 205, 517
AfiI CCNNNNNNNGG 1 cut(s) 570
AgsI TTSAA 5 cut(s) 98, 187, 267, 528, 612
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
AoxI GGCC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 205, 517
AspS9I GGNCC 1 cut(s) 370
AxyI CCTNAGG 1 cut(s) 569
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BbsI GAAGAC 3 cut(s) 171, 280, 318
BccI CCATC 5 cut(s) 140, 300, 446, 482, 544
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 2 cut(s) 35, 543
BfuI GTATCC 2 cut(s) 35, 543
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 39
BpiI GAAGAC 3 cut(s) 171, 280, 318
Bsa29I ATCGAT 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 633
Bsc4I CCNNNNNNNGG 1 cut(s) 570
Bse1I ACTGG 2 cut(s) 172, 429
Bse21I CCTNAGG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 172, 429
BshFI GGCC 1 cut(s) 372
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 570
BsnI GGCC 1 cut(s) 372
Bsp143I GATC 3 cut(s) 229, 318, 549
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 499
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 1 cut(s) 552
BsrI ACTGG 2 cut(s) 172, 429
BssMI GATC 3 cut(s) 229, 318, 549
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 507, 569
BstENI CCTNNNNNAGG 1 cut(s) 568
BstKTI GATC 3 cut(s) 232, 321, 552
BstMBI GATC 3 cut(s) 229, 318, 549
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV2I GAAGAC 3 cut(s) 171, 280, 318
Bsu15I ATCGAT 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 569
BsuI GTATCC 2 cut(s) 35, 543
BsuRI GGCC 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 321
CviAII CATG 2 cut(s) 466, 553
CviJI RGCY 4 cut(s) 179, 337, 360, 372
CviKI_1 RGCY 4 cut(s) 179, 337, 360, 372
DdeI CTNAG 2 cut(s) 507, 569
DpnI GATC 3 cut(s) 231, 320, 551
DpnII GATC 3 cut(s) 229, 318, 549
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 569
EcoNI CCTNNNNNAGG 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 469, 556
FaiI YATR 6 cut(s) 79, 81, 115, 342, 467, 554
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 465, 552
HaeIII GGCC 1 cut(s) 372
Hin1II CATG 2 cut(s) 469, 556
HinfI GANTC 2 cut(s) 50, 410
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 415, 508
Hpy188III TCNNGA 3 cut(s) 187, 452, 553
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 2 cut(s) 215, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 507, 569
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 2 cut(s) 469, 556
Kzo9I GATC 3 cut(s) 229, 318, 549
LpnPI CCDG 4 cut(s) 24, 51, 185, 410
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 1 cut(s) 276
MalI GATC 3 cut(s) 231, 320, 551
MboI GATC 3 cut(s) 229, 318, 549
MboII GAAGA 4 cut(s) 176, 256, 280, 323
MluCI AATT 7 cut(s) 32, 205, 217, 393, 447, 517, 607
MnlI CCTC 7 cut(s) 40, 67, 71, 240, 361, 370, 569
MseI TTAA 5 cut(s) 333, 392, 446, 545, 606
MslI CAYNNNNRTG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 229, 318, 549
NlaIII CATG 2 cut(s) 469, 556
NmuCI GTSAC 1 cut(s) 276
PagI TCATGA 1 cut(s) 552
PfeI GAWTC 2 cut(s) 50, 410
PflFI GACNNNGTC 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 1 cut(s) 370
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PsyI GACNNNGTC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 5 cut(s) 333, 392, 446, 545, 606
Sau3AI GATC 3 cut(s) 229, 318, 549
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 39
SetI ASST 6 cut(s) 255, 339, 381, 570, 618, 635
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 7 cut(s) 32, 205, 217, 393, 447, 517, 607
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 635
TaqI TCGA 2 cut(s) 321, 441
TasI AATT 7 cut(s) 32, 205, 217, 393, 447, 517, 607
TfiI GAWTC 2 cut(s) 50, 410
Tru1I TTAA 5 cut(s) 333, 392, 446, 545, 606
Tru9I TTAA 5 cut(s) 333, 392, 446, 545, 606
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 434, 454
TspRI CASTG 1 cut(s) 285
Tth111I GACNNNGTC 1 cut(s) 274
XagI CCTNNNNNAGG 1 cut(s) 568
XapI RAATTY 2 cut(s) 205, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.