Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000076.1

Orthogroup ID

OG0004274

Physical Location & Seq

Genomic Coordinates Reverse (-)

161785 .. 164814

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000076.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggggtgctttacttctaaagggaaacggcagtttccaggatacgaggatcctgtctccctcgcttcacaaacagcatttactgttagtgaagttgaagcactctttgagctatataagagtatcagcagttctgtgattgatgatggattgataaacaaggaagagttccagttggccattttcaagaatagaaagaaagaaaatttgtttgcaaatcggatatttgatctatttgatgtgaagaggaagggtgtcattgatttcaatgactttgttagatcactgactgtcttccatcccaatgccccacaagaagacaagatcgatttttcatttaagctctatgacttggataacacgggctttattgagcgccaagaggtcaagcaaatgttaattgcacttctttgtgaatctgaaatgaaactggcagatgacaccatcgagttaattcttgataagactttcatggaagctgatgtgaaccaagatgggaaaatagacttttctgagtggaaaaattttgtttcaaagaatccatcattgttaaagatcatgaccctcccctaccttagggatattaccaccacatttccaagttttgtatttaattcagaggttgatgagattgctacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0016049 GO:0019722 GO:0019899 GO:0019900 GO:0019932 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0035556 GO:0040007 GO:0042221 GO:0042995 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0044706 GO:0046872 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090406 GO:0097305 GO:0097306 GO:0120025 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.53

Weight (kDa)

4.68

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17615 AT4G17615 AT4G17615 AT4G17615 AT4G17615 AT5G47100 AT5G47100
fragaria_vesca	FvH4_5g20510 FvH4_5g20510 FvH4_5g20510
malus_domestica	MD00G1132600.v1.1 MD06G1046100.v1.1
prunus_persica	Prupe.5G054400_v2.0.a1 Prupe.5G054400_v2.0.a1 Prupe.5G054400_v2.0.a1 Prupe.5G054400_v2.0.a1
pyrus_communis	pycom04g04760 pycom06g03900
rosa_chinensis	RchiOBHm_Chr7g0205861
rosa_laevigata	RLG00000003349 RLG00000014757 RLG00000017025 RLG00000018598
rosa_multiflora	Rmu_sc0000076.1_g000035 Rmu_sc0004084.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251910
rosa_rugosa	Rorug07G0093500 Rorug07G0093600
rosa_samantha	Rh7BG220300 Rh7CG238800 Rh7DG231900
rosa_wichuraiana	Rw7G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	44, 57
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	205, 523
AfiI	CCNNNNNNNGG	1 cut(s)	576
AgsI	TTSAA	4 cut(s)	98, 187, 268, 534
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	112, 343, 479
AluI	AGCT	3 cut(s)	112, 343, 479
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	44, 57
AoxI	GGCC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	205, 523
AspLEI	GCGC	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	286, 324
BccI	CCATC	5 cut(s)	140, 306, 452, 488, 550
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	286, 324
Bsa29I	ATCGAT	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	172, 435
Bse21I	CCTNAGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	327
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	172, 435
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	5 cut(s)	49, 229, 281, 324, 555
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	505
BspDI	ATCGAT	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	44, 57
BsrI	ACTGG	2 cut(s)	172, 435
BssMI	GATC	5 cut(s)	49, 229, 281, 324, 555
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	85, 292
Bst6I	CTCTTC	2 cut(s)	159, 239
BstBAI	YACGTR	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	513, 575
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	5 cut(s)	52, 232, 284, 327, 558
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	49, 229, 281, 324, 555
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV2I	GAAGAC	2 cut(s)	286, 324
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	327
CviAII	CATG	2 cut(s)	472, 559
CviJI	RGCY	5 cut(s)	112, 179, 343, 366, 479
CviKI_1	RGCY	5 cut(s)	112, 179, 343, 366, 479
DdeI	CTNAG	2 cut(s)	513, 575
DpnI	GATC	5 cut(s)	51, 231, 283, 326, 557
DpnII	GATC	5 cut(s)	49, 229, 281, 324, 555
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	159, 239
EarI	CTCTTC	2 cut(s)	159, 239
Eco81I	CCTNAGG	1 cut(s)	575
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	475, 562
FaiI	YATR	5 cut(s)	115, 117, 348, 473, 560
FatI	CATG	2 cut(s)	471, 558
FokI	GGATG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	475, 562
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	416, 538
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	222, 421, 514, 619
Hpy188III	TCNNGA	3 cut(s)	187, 458, 559
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	85, 292
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	2 cut(s)	215, 404
HpyF3I	CTNAG	2 cut(s)	513, 575
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	2 cut(s)	475, 562
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	49, 229, 281, 324, 555
LpnPI	CCDG	5 cut(s)	24, 51, 66, 185, 416
MaeII	ACGT	1 cut(s)	638
MalI	GATC	5 cut(s)	51, 231, 283, 326, 557
MboI	GATC	5 cut(s)	49, 229, 281, 324, 555
MboII	GAAGA	4 cut(s)	176, 256, 286, 329
MflI	RGATCY	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	5 cut(s)	205, 399, 453, 523, 613
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	6 cut(s)	40, 71, 240, 376, 575, 613
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	5 cut(s)	339, 398, 452, 551, 612
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	49, 229, 281, 324, 555
NlaIII	CATG	2 cut(s)	475, 562
NlaIV	GGNNCC	1 cut(s)	51
PagI	TCATGA	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	416, 538
PfoI	TCCNGGA	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	51
PsrI	GAACNNNNNNTAC	2 cut(s)	115, 147
PsuI	RGATCY	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	5 cut(s)	339, 398, 452, 551, 612
Sau3AI	GATC	5 cut(s)	49, 229, 281, 324, 555
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	7 cut(s)	114, 345, 387, 481, 576, 624, 641
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	5 cut(s)	205, 399, 453, 523, 613
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	85, 292
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	2 cut(s)	327, 447
TasI	AATT	5 cut(s)	205, 399, 453, 523, 613
TfiI	GAWTC	2 cut(s)	416, 538
Tru1I	TTAA	5 cut(s)	339, 398, 452, 551, 612
Tru9I	TTAA	5 cut(s)	339, 398, 452, 551, 612
TscAI	CASTG	1 cut(s)	291
TspDTI	ATGAA	3 cut(s)	324, 440, 460
TspRI	CASTG	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	2 cut(s)	205, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.