Prupe.5G054400_v2.0.a1

Calcineurin B-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0004274
Physical Location & Seq
Reverse (-)
5813999 .. 5819707
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G054400.3

Sequence Viewer

Length: 642 bp
ATGGGTTGTTTTAGTTCTAAAGCAAGGCGGCAGTTTCCTGGACACGAGGATCCAGTGAGCCTTGCTTCGCAAACAGCTTTTACAGTTAGTGAAGTTGAAGCACTCTTTGAGCTATATAAGAGTATTAGCAGTTCTGTGATTGATGATGGGTTGATAAACAAGGAAGAATTTCAGCTAGCCATTTTCAAGAATAGAAAGAAAGAAAATCTCTTTGCAAATCGGATATTTGATCTGTTTGATGTGAAGCGAAAGGGTGTTATTGATTTCAGTGACTTTGTGAAATCACTCAATGTCTTCCATCCCAATGCCCAACTAGAGGACAAGATTGATTTTTCATTTAAGCTTTATGATTTGGATAGCACGGGATTTATTGAGCGCCAAGAGGTCAAACAAATGTTAATTGCACTTCTTTGTGAGTCTGAAATGAAGCTGGCTGATGAGACTATTGAGCTAATTCTTGACAAGACTTTCTTGGAAGCTGATGTAAATCAAGATGGGAAGATTGACAGATATGAATGGAACAATTTTGTCTCTAAGAATCCATCATTATTAAAGATCATGACCCTCCCCTATCTTAGGGATATTACTACTACATTTCCAAGTTTTGTATTTAATTCTGAGGTTGATGAGATTGCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0016049 GO:0019722 GO:0019899 GO:0019900 GO:0019932 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0035556 GO:0040007 GO:0042221 GO:0042995 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0044706 GO:0046872 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090406 GO:0097305 GO:0097306 GO:0120025 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

214

Amino Acids

24.54

Weight (kDa)

4.75

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 44, 57
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 316, 576
AgsI TTSAA 2 cut(s) 98, 187
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 7 cut(s) 77, 112, 175, 343, 430, 451, 479
AluI AGCT 7 cut(s) 77, 112, 175, 343, 430, 451, 479
Alw26I GTCTC 2 cut(s) 434, 535
AlwI GGATC 2 cut(s) 44, 57
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 378
AsuNHI GCTAGC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 49
BauI CACGAG 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 286
BccI CCATC 4 cut(s) 140, 306, 488, 550
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 434, 535
BfaI CTAG 2 cut(s) 176, 314
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 39
BmtI GCTAGC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 486
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 576
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 316, 576
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 316, 576
BsmAI GTCTC 2 cut(s) 434, 535
Bsp143I GATC 3 cut(s) 49, 229, 555
BspACI CCGC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 610
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 44, 57
BsrI ACTGG 1 cut(s) 53
BssMI GATC 3 cut(s) 49, 229, 555
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 639
BstC8I GCNNGC 2 cut(s) 177, 432
BstDEI CTNAG 3 cut(s) 534, 575, 618
BstENI CCTNNNNNAGG 1 cut(s) 574
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 3 cut(s) 52, 232, 558
BstMAI GTCTC 2 cut(s) 434, 535
BstMBI GATC 3 cut(s) 49, 229, 555
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 60, 274
Cac8I GCNNGC 2 cut(s) 177, 432
CciI TCATGA 1 cut(s) 558
CfoI GCGC 1 cut(s) 378
CviAII CATG 1 cut(s) 559
DdeI CTNAG 3 cut(s) 534, 575, 618
DpnI GATC 3 cut(s) 51, 231, 557
DpnII GATC 3 cut(s) 49, 229, 555
EcoNI CCTNNNNNAGG 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 562
FaiI YATR 5 cut(s) 115, 117, 348, 513, 560
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FatI CATG 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 176, 314
GlaI GCGC 1 cut(s) 377
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 379
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 2 cut(s) 416, 538
Hpy188I TCNGA 3 cut(s) 222, 421, 619
Hpy188III TCNNGA 4 cut(s) 187, 458, 491, 559
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 2 cut(s) 215, 404
HpyF3I CTNAG 3 cut(s) 534, 575, 618
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 49, 229, 555
LpnPI CCDG 4 cut(s) 24, 51, 66, 416
MaeI CTAG 2 cut(s) 176, 314
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 51, 231, 557
MboI GATC 3 cut(s) 49, 229, 555
MboII GAAGA 3 cut(s) 176, 286, 511
MflI RGATCY 1 cut(s) 49
MluCI AATT 5 cut(s) 167, 399, 453, 523, 613
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 5 cut(s) 40, 310, 376, 575, 613
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 4 cut(s) 339, 398, 551, 612
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
NdeII GATC 3 cut(s) 49, 229, 555
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 269
PagI TCATGA 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PsuI RGATCY 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 4 cut(s) 339, 398, 551, 612
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 49, 229, 555
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 5 cut(s) 167, 399, 453, 523, 613
SsiI CCGC 1 cut(s) 28
SspMI CTAG 2 cut(s) 176, 314
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 641
TasI AATT 5 cut(s) 167, 399, 453, 523, 613
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 4 cut(s) 339, 398, 551, 612
Tru9I TTAA 4 cut(s) 339, 398, 551, 612
TscAI CASTG 2 cut(s) 60, 274
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 324, 440, 528
TspRI CASTG 2 cut(s) 60, 274
XagI CCTNNNNNAGG 1 cut(s) 574
XapI RAATTY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 2 cut(s) 176, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.