Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004274

Physical Location & Seq

Genomic Coordinates Forward (+)

18940075 .. 18947195

Gene Structure 7121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

ATGGGGTGCTTTACTTCTAAAGGGAAACGGCAGTTTCCAGGATACGAGGATCCTGTCTCCCTCGCTTCACAAACAGCATTTACTGTTAGTGAAGTTGAAGCACTCTTTGAGCTATATAAGAGTATCAGCAGTTCTGTGATTGATGATGGATTGATAAACAAGGAAGAGTTCCAGTTAGCCATTTTCAAGAATAGAAAGAAAGAAAATTTGTTTGCAAATCGGCTCTATGACTTGGATAACACGGGCTTTATTGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAATCTGAAATGAAACTGGCAGATGACACCATCGAGTTAATTCTTGATAAGACTTTCATGGAAGCTGATGTGAACCAAGATGGGAAAATAGACTTTTCTGAGTGGAAAAATTTTGTTTCGAAGAATCCATCATTGTTAAAGATCATGACCCTCCCCTACCTTAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAGAGATCGTCGTCATCCAAGGAGAAGGTGGTCAACCCACTGTTCGAGAAGCATCCGAAGCAGATCATGATTGGGAGGGGATTGCCTCTGAAGAGAGATCTGTCCCGATTTGTCAACCTTGGGCCATTTGTTCAGATCTAACTCG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0016049 GO:0019722 GO:0019899 GO:0019900 GO:0019932 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0035556 GO:0040007 GO:0042221 GO:0042995 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0044706 GO:0046872 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090406 GO:0097305 GO:0097306 GO:0120025 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.13

Weight (kDa)

4.49

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	74 - 136	1.4e-08	EF-hand domain pair
EF-hand_1	PF00036	113 - 139	3.5e-07	EF hand domain
EF-hand_5	PF13202	113 - 137	7.3e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17615 AT4G17615 AT4G17615 AT4G17615 AT4G17615 AT5G47100 AT5G47100
fragaria_vesca	FvH4_5g20510 FvH4_5g20510 FvH4_5g20510
malus_domestica	MD00G1132600.v1.1 MD06G1046100.v1.1
prunus_persica	Prupe.5G054400_v2.0.a1 Prupe.5G054400_v2.0.a1 Prupe.5G054400_v2.0.a1 Prupe.5G054400_v2.0.a1
pyrus_communis	pycom04g04760 pycom06g03900
rosa_chinensis	RchiOBHm_Chr7g0205861
rosa_laevigata	RLG00000003349 RLG00000014757 RLG00000017025 RLG00000018598
rosa_multiflora	Rmu_sc0000076.1_g000035 Rmu_sc0004084.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251910
rosa_rugosa	Rorug07G0093500 Rorug07G0093600
rosa_samantha	Rh7BG220300 Rh7CG238800 Rh7DG231900
rosa_wichuraiana	Rw7G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	44, 57
AcsI	RAATTY	2 cut(s)	205, 403
AcuI	CTGAAG	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	2 cut(s)	98, 187
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	112, 359
AluI	AGCT	2 cut(s)	112, 359
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	44, 57
AoxI	GGCC	1 cut(s)	618
ApoI	RAATTY	2 cut(s)	205, 403
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	618
AsuII	TTCGAA	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	49
BccI	CCATC	4 cut(s)	140, 332, 368, 430
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	35
BglII	AGATCT	2 cut(s)	593, 631
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	557
Bpu14I	TTCGAA	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	514, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	172, 315
Bse21I	CCTNAGG	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	514, 614
BseGI	GGATG	2 cut(s)	510, 548
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	172, 315
BshFI	GGCC	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	413
Bsp143I	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	1 cut(s)	385
BspHI	TCATGA	2 cut(s)	438, 562
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	44, 57
BspT104I	TTCGAA	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	172, 315
BssECI	CCNNGG	2 cut(s)	514, 614
BssMI	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
BssT1I	CCWWGG	2 cut(s)	514, 614
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	85, 538
Bst6I	CTCTTC	2 cut(s)	159, 582
BstBI	TTCGAA	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	393, 455
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	510, 548
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	6 cut(s)	52, 438, 504, 562, 596, 634
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstX2I	RGATCY	3 cut(s)	49, 593, 631
BstYI	RGATCY	3 cut(s)	49, 593, 631
Bsu36I	CCTNAGG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	510, 548
BtsIMutI	CAGTG	1 cut(s)	534
CciI	TCATGA	2 cut(s)	438, 562
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	618
CviAII	CATG	3 cut(s)	352, 439, 563
CviJI	RGCY	6 cut(s)	112, 179, 223, 246, 359, 620
CviKI_1	RGCY	6 cut(s)	112, 179, 223, 246, 359, 620
DdeI	CTNAG	2 cut(s)	393, 455
DpnI	GATC	6 cut(s)	51, 437, 503, 561, 595, 633
DpnII	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
Eam1104I	CTCTTC	2 cut(s)	159, 582
EarI	CTCTTC	2 cut(s)	159, 582
Eco130I	CCWWGG	2 cut(s)	514, 614
Eco57I	CTGAAG	1 cut(s)	606
Eco81I	CCTNAGG	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	514, 614
ErhI	CCWWGG	2 cut(s)	514, 614
FaeI	CATG	3 cut(s)	355, 442, 566
FaiI	YATR	6 cut(s)	115, 117, 228, 353, 440, 564
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	3 cut(s)	351, 438, 562
FokI	GGATG	2 cut(s)	497, 535
GlaI	GCGC	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	355, 442, 566
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	2 cut(s)	530, 611
HindII	GTYRAC	2 cut(s)	530, 611
HinfI	GANTC	2 cut(s)	296, 418
Hpy166II	GTNNAC	3 cut(s)	367, 530, 611
Hpy188I	TCNGA	6 cut(s)	301, 394, 499, 553, 586, 631
Hpy188III	TCNNGA	6 cut(s)	187, 338, 439, 542, 563, 601
Hpy8I	GTNNAC	3 cut(s)	367, 530, 611
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	85, 538
HpyCH4V	TGCA	2 cut(s)	215, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	2 cut(s)	393, 455
Hsp92II	CATG	3 cut(s)	355, 442, 566
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
LpnPI	CCDG	5 cut(s)	24, 51, 66, 185, 296
LweI	GCATC	1 cut(s)	557
MalI	GATC	6 cut(s)	51, 437, 503, 561, 595, 633
MboI	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
MboII	GAAGA	3 cut(s)	176, 427, 599
MflI	RGATCY	3 cut(s)	49, 593, 631
MluCI	AATT	5 cut(s)	205, 279, 333, 403, 493
MnlI	CCTC	6 cut(s)	40, 71, 256, 455, 565, 592
MseI	TTAA	4 cut(s)	278, 332, 431, 492
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	554
NdeII	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
NlaIII	CATG	3 cut(s)	355, 442, 566
NlaIV	GGNNCC	1 cut(s)	51
NspV	TTCGAA	1 cut(s)	413
PagI	TCATGA	2 cut(s)	438, 562
PfeI	GAWTC	2 cut(s)	296, 418
PfoI	TCCNGGA	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	618
PsrI	GAACNNNNNNTAC	2 cut(s)	115, 147
PsuI	RGATCY	3 cut(s)	49, 593, 631
SaqAI	TTAA	4 cut(s)	278, 332, 431, 492
Sau3AI	GATC	6 cut(s)	49, 435, 501, 559, 593, 631
Sau96I	GGNCC	1 cut(s)	618
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	6 cut(s)	114, 267, 361, 456, 526, 616
SfaNI	GCATC	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	413
Sse9I	AATT	5 cut(s)	205, 279, 333, 403, 493
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	514, 614
TaaI	ACNGT	2 cut(s)	85, 538
TaqI	TCGA	3 cut(s)	327, 413, 541
TasI	AATT	5 cut(s)	205, 279, 333, 403, 493
TfiI	GAWTC	2 cut(s)	296, 418
Tru1I	TTAA	4 cut(s)	278, 332, 431, 492
Tru9I	TTAA	4 cut(s)	278, 332, 431, 492
TscAI	CASTG	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	320, 340
TspRI	CASTG	1 cut(s)	541
XagI	CCTNNNNNAGG	1 cut(s)	454
XapI	RAATTY	2 cut(s)	205, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.