AT5G47100

calcineurin b-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004274
Physical Location & Seq
Reverse (-)
19129640 .. 19132304
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47100.2

Sequence Viewer

Length: 642 bp
ATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTCCCGATCACGAAAACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGAAGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAACAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAAGAAAATTTGTTTGCCAATAGGATATTTGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGTGAGATCACTCAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTTTAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAGATGTTGATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTTGATCAGACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAGGGATATAACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0016049 GO:0019722 GO:0019899 GO:0019900 GO:0019932 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0035556 GO:0040007 GO:0042221 GO:0042995 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0044706 GO:0046872 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090406 GO:0097305 GO:0097306 GO:0120025 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.53

Weight (kDa)

4.58

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 495
AcsI RAATTY 2 cut(s) 32, 205
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 4 cut(s) 98, 118, 173, 187
AjiI CACGTC 1 cut(s) 639
AluBI AGCT 2 cut(s) 61, 132
AluI AGCT 2 cut(s) 61, 132
Alw26I GTCTC 2 cut(s) 65, 264
AlwI GGATC 1 cut(s) 495
ApeKI GCWGC 2 cut(s) 23, 129
ApoI RAATTY 2 cut(s) 32, 205
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 397
BbvI GCAGC 2 cut(s) 10, 141
BccI CCATC 4 cut(s) 140, 306, 488, 550
BceAI ACGGC 1 cut(s) 36
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 65, 264
BfaI CTAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 2 cut(s) 24, 130
BlsI GCNGC 2 cut(s) 25, 131
BmgBI CACGTC 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 298, 499
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 60, 589
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 10, 141
BsgI GTGCAG 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 2 cut(s) 65, 264
Bsp143I GATC 4 cut(s) 40, 281, 460, 487
BspCNI CTCAG 2 cut(s) 61, 588
BspHI TCATGA 1 cut(s) 558
BspPI GGATC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 4 cut(s) 40, 281, 460, 487
Bst6I CTCTTC 2 cut(s) 159, 570
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 69, 575
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 298, 499
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 4 cut(s) 43, 284, 463, 490
BstMAI GTCTC 2 cut(s) 65, 264
BstMBI GATC 4 cut(s) 40, 281, 460, 487
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 10, 141
BtgI CCRYGG 1 cut(s) 18
BtrI CACGTC 1 cut(s) 639
BtsCI GGATG 2 cut(s) 298, 499
Cac8I GCNNGC 1 cut(s) 63
CciI TCATGA 1 cut(s) 558
CfoI GCGC 1 cut(s) 378
CseI GACGC 1 cut(s) 485
CviAII CATG 2 cut(s) 352, 559
CviJI RGCY 7 cut(s) 23, 61, 132, 150, 343, 366, 434
CviKI_1 RGCY 7 cut(s) 23, 61, 132, 150, 343, 366, 434
DdeI CTNAG 2 cut(s) 69, 575
DpnI GATC 4 cut(s) 42, 283, 462, 489
DpnII GATC 4 cut(s) 40, 281, 460, 487
Eam1104I CTCTTC 2 cut(s) 159, 570
EarI CTCTTC 2 cut(s) 159, 570
FaeI CATG 2 cut(s) 355, 562
FaiI YATR 5 cut(s) 108, 125, 353, 560, 584
FatI CATG 2 cut(s) 351, 558
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 24, 130
FokI GGATG 2 cut(s) 285, 506
Fsp4HI GCNGC 2 cut(s) 24, 130
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 24, 130
HaeII RGCGCY 1 cut(s) 379
HgaI GACGC 1 cut(s) 485
HhaI GCGC 1 cut(s) 378
Hin1II CATG 2 cut(s) 355, 562
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 416, 562
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 142, 625
Hpy188I TCNGA 5 cut(s) 70, 421, 465, 600, 619
Hpy188III TCNNGA 6 cut(s) 38, 44, 118, 187, 491, 559
Hpy8I GTNNAC 2 cut(s) 142, 625
Hpy99I CGWCG 2 cut(s) 592, 640
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 2 cut(s) 360, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 69, 575
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 2 cut(s) 355, 562
HspAI GCGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 40, 281, 460, 487
LmnI GCTCC 1 cut(s) 519
LpnPI CCDG 5 cut(s) 40, 66, 348, 416, 562
Lsp1109I GCAGC 2 cut(s) 10, 141
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 638
MalI GATC 4 cut(s) 42, 283, 462, 489
MboI GATC 4 cut(s) 40, 281, 460, 487
MboII GAAGA 2 cut(s) 176, 557
MluCI AATT 5 cut(s) 32, 110, 205, 258, 523
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 4 cut(s) 310, 376, 466, 613
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 3 cut(s) 243, 552, 612
MslI CAYNNNNRTG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 4 cut(s) 40, 281, 460, 487
NlaIII CATG 2 cut(s) 355, 562
PagI TCATGA 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 596
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 25, 131
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 3 cut(s) 243, 552, 612
SatI GCNGC 2 cut(s) 24, 130
Sau3AI GATC 4 cut(s) 40, 281, 460, 487
SchI GAGTC 1 cut(s) 556
SetI ASST 6 cut(s) 63, 134, 338, 387, 624, 641
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 5 cut(s) 32, 110, 205, 258, 523
SspMI CTAG 1 cut(s) 314
TaiI ACGT 1 cut(s) 641
TasI AATT 5 cut(s) 32, 110, 205, 258, 523
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 243, 552, 612
Tru9I TTAA 3 cut(s) 243, 552, 612
TseI GCWGC 2 cut(s) 23, 129
TspDTI ATGAA 3 cut(s) 123, 358, 440
TspGWI ACGGA 1 cut(s) 558
XapI RAATTY 2 cut(s) 32, 205
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.