Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

9825145 .. 9827357

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTATAGGGAGAGAGGTATGGTTGGATCGAAGTCGGAGGTGGTCGATCGGAAACGAATAAACGAGATTCACGATAACAGGCCTTCGCATTCGATGTCTCAGCCTGTCAATGGAAAAGGCAAGGTAACATCGACCTCCGTTTTGATGGGGAAGCAGCAATTGCATGATAAGGAATCTTCACGTTCTGGTTCTATCTCTAAGACTAACATTTCCGACGCTGTGGATATATCAGACACAGACAGCGAAGAATCAGAGGTCAGTGGTTCTGATGGAGAGGACACCTCGTGGATATCTTGGTTCTGCAACCTTCGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTACATCCAGGATGACTTTAACTTGTGTGGACTCAGCCATCAAGTTCCTTACTACGACTATGCCCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAGGAACAGAATGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTTCATATTGACTAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATGCCCAAGAGTTTATTGTTGTGGCCAACCTTGTTTACCAGTTGGTCAATCCGATATCCCTAGAGCAAGCACCGTAAAGATATACTGCCCAAAATGTGAAGATGTCTATTACCCACGATCAAAATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGATGACGTACGGGCATCTGAAGCCACAAAAGGCATCACAAAGCTACACTCAAAGAGTGTTTGGGTTCAAGCTACACAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

282

Amino Acids

31.98

Weight (kDa)

5.39

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	95 - 273	2.1e-76	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	746
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	803
AdeI	CACNNNGTG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	832
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	731, 807, 835
AluI	AGCT	3 cut(s)	731, 807, 835
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	80, 607
ApeKI	GCWGC	2 cut(s)	154, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
Asp700I	GAANNNNTTC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	609
BauI	CACGAG	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	166, 497
BccI	CCATC	4 cut(s)	139, 263, 390, 719
BceAI	ACGGC	1 cut(s)	829
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	531, 645
BisI	GCNGC	2 cut(s)	155, 486
BlsI	GCNGC	2 cut(s)	156, 487
Bme1390I	CCNGG	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	4 cut(s)	483, 575, 787, 806
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BsaJI	CCNNGG	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	3 cut(s)	348, 361, 430
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	113, 391
BseNI	ACTGG	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	166, 497
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	82, 609
BsiEI	CGRYCG	1 cut(s)	49
BsiWI	CGTACG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	82, 609
Bsp143I	GATC	4 cut(s)	26, 46, 474, 701
BspANI	GGCC	2 cut(s)	82, 609
BspCNI	CTCAG	2 cut(s)	112, 390
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	4 cut(s)	26, 46, 474, 701
BssSI	CACGAG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	712
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	658
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	543, 652
BstDEI	CTNAG	3 cut(s)	99, 198, 377
BstF5I	GGATG	3 cut(s)	348, 361, 430
BstKTI	GATC	4 cut(s)	29, 49, 477, 704
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	4 cut(s)	26, 46, 474, 701
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 784, 841
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	166, 497
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	82, 609
BtsCI	GGATG	3 cut(s)	348, 361, 430
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	543, 652
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	772
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	3 cut(s)	164, 440, 512
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	3 cut(s)	99, 198, 377
DpnI	GATC	4 cut(s)	28, 48, 476, 703
DpnII	GATC	4 cut(s)	26, 46, 474, 701
DraIII	CACNNNGTG	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	712
Eco147I	AGGCCT	1 cut(s)	82
Eco32I	GATATC	2 cut(s)	291, 640
Eco57I	CTGAAG	1 cut(s)	803
EcoRII	CCWGG	1 cut(s)	351
EcoRV	GATATC	2 cut(s)	291, 640
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	3 cut(s)	167, 443, 515
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	3 cut(s)	163, 439, 511
Fnu4HI	GCNGC	2 cut(s)	155, 486
FokI	GGATG	3 cut(s)	335, 368, 437
Fsp4HI	GCNGC	2 cut(s)	155, 486
FspBI	CTAG	2 cut(s)	531, 645
GluI	GCNGC	2 cut(s)	155, 486
HaeIII	GGCC	2 cut(s)	82, 609
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	167, 443, 515
HinfI	GANTC	7 cut(s)	67, 173, 248, 375, 431, 479, 508
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	374, 453, 620
Hpy188I	TCNGA	8 cut(s)	37, 51, 214, 232, 253, 268, 637, 783
Hpy188III	TCNNGA	2 cut(s)	71, 763
Hpy8I	GTNNAC	3 cut(s)	374, 453, 620
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	93, 317
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	3 cut(s)	181, 746, 770
HpyCH4V	TGCA	2 cut(s)	163, 303
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 784, 841
HpyF3I	CTNAG	3 cut(s)	99, 198, 377
HpySE526I	ACGT	3 cut(s)	181, 746, 770
Hsp92II	CATG	3 cut(s)	167, 443, 515
Kzo9I	GATC	4 cut(s)	26, 46, 474, 701
LmnI	GCTCC	1 cut(s)	728
LpnPI	CCDG	7 cut(s)	64, 117, 171, 338, 365, 527, 636
Lsp1109I	GCAGC	2 cut(s)	166, 497
LweI	GCATC	4 cut(s)	483, 575, 787, 806
MaeI	CTAG	2 cut(s)	531, 645
MaeII	ACGT	3 cut(s)	181, 746, 770
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	4 cut(s)	28, 48, 476, 703
MboI	GATC	4 cut(s)	26, 46, 474, 701
MboII	GAAGA	6 cut(s)	168, 257, 316, 426, 594, 695
MfeI	CAATTG	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	609
MluCI	AATT	2 cut(s)	158, 470
MluNI	TGGCCA	1 cut(s)	609
MlyI	GAGTC	3 cut(s)	369, 440, 488
MmeI	TCCRAC	3 cut(s)	4, 15, 237
MnlI	CCTC	7 cut(s)	8, 31, 145, 247, 268, 292, 451
Mox20I	TGGCCA	1 cut(s)	609
MroXI	GAANNNNTTC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	160, 784, 841
NdeII	GATC	4 cut(s)	26, 46, 474, 701
NlaIII	CATG	3 cut(s)	167, 443, 515
PceI	AGGCCT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	67, 173, 248, 508
Pfl23II	CGTACG	1 cut(s)	771
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	156, 487
Ple19I	CGATCG	1 cut(s)	49
PleI	GAGTC	3 cut(s)	369, 439, 487
PpsI	GAGTC	3 cut(s)	369, 439, 487
Psp1406I	AACGTT	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspLI	CGTACG	1 cut(s)	771
PvuI	CGATCG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	155, 486
Sau3AI	GATC	4 cut(s)	26, 46, 474, 701
SchI	GAGTC	3 cut(s)	369, 440, 488
ScrFI	CCNGG	1 cut(s)	353
SfaNI	GCATC	4 cut(s)	483, 575, 787, 806
Sse9I	AATT	2 cut(s)	158, 470
SseBI	AGGCCT	1 cut(s)	82
SspMI	CTAG	2 cut(s)	531, 645
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	3 cut(s)	184, 749, 773
TaqI	TCGA	5 cut(s)	29, 45, 92, 131, 477
TasI	AATT	2 cut(s)	158, 470
TfiI	GAWTC	4 cut(s)	67, 173, 248, 508
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	154, 485
TspDTI	ATGAA	3 cut(s)	483, 500, 511
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	2 cut(s)	531, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.