Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

31169013 .. 31170873

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1240200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCCTAAAGATCAGAGAGGTGTAATTAGATCACGTTCTGAACCGGCTTTGAACCCTAATCGACTCAGAGACAAATCTTTGGCTCCTTCTACGTCACTTGCTGCCAATCCCGATGATACGGATACATTCTATGATCAGGCGGAATCAGCTGATACAAGTTGCAAAGATTCAGATGTTAGATGCTATGGTGATGAAGATGCATCTTGGATATCATGGTTCTGCAATCAGAAAGGGAATGAATTCTTCTGTGAAGTCGACGATGATTACATCCTCGATGATTTCAACCGTTCAGGTTTAAGAAACCACGTACCATTCTATGATTATGCACTGGATTTAATGTTGGACATTGAGTCTTCCAATGATGGCTTAACTGATGAGGAACAGAACAATCTGATCGAATCTGCGACGGAGATGCTCTACGGTTTAATTCATGCCAGATACATAGCAACTACCAAGGGATTGTCTGCAATGTTGGAGAAGTACAGGAACTATGATTTTGGCAGATGTCCAAGAGTGAACTGCAATAAACAACATTGTCTGCCTGTTGGTGAGTCAGACATCCCAAGATTAAGCACTGTAAAAATCTATTGTCCCAAGTGTGAAGACATTTATTCCCCGCAATCCAGACACCAAGAAGGTATCCTTATTTCTTCAATGTTTGCCTTGACAACAATCTCAGAAATTGATGGGGCATACTTTGGAACCACATTTCCTCACCTTTTCTTCTTGACCTACGGGCATCTTAAGCCGCAGAAGGGCATTCAGAACTATGTTCCAAGAATACACGGCTTCAAAGTCCGCAACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

270

Amino Acids

30.71

Weight (kDa)

4.98

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	68 - 265	3.8e-69	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	4 cut(s)	140, 617, 749, 799
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	2 cut(s)	309, 482
AfiI	CCNNNNNNNGG	1 cut(s)	755
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	4 cut(s)	52, 283, 654, 793
AhdI	GACNNNNNGTC	1 cut(s)	349
AloI	GAACNNNNNNTCC	2 cut(s)	694, 726
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	200, 560, 707
BbsI	GAAGAC	2 cut(s)	345, 609
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	356, 680
BceAI	ACGGC	1 cut(s)	802
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciVI	GTATCC	2 cut(s)	115, 650
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	2 cut(s)	115, 650
BisI	GCNGC	2 cut(s)	102, 749
BlsI	GCNGC	2 cut(s)	103, 750
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	84, 703
BmsI	GCATC	5 cut(s)	170, 187, 209, 402, 748
BpiI	GAAGAC	2 cut(s)	345, 609
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	2 cut(s)	267, 558
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	79, 690
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	759
Bsp143I	GATC	4 cut(s)	10, 29, 133, 393
BspACI	CCGC	4 cut(s)	140, 617, 749, 799
BspCNI	CTCAG	2 cut(s)	78, 689
BspLI	GGNNCC	2 cut(s)	84, 703
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	4 cut(s)	10, 29, 133, 393
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	287, 422, 577
BstAFI	CTTAAG	1 cut(s)	743
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	65, 676
BstF5I	GGATG	2 cut(s)	267, 558
BstKTI	GATC	4 cut(s)	13, 32, 136, 396
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	10, 29, 133, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 745
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	345, 609
BsuI	GTATCC	2 cut(s)	115, 650
BtsCI	GGATG	2 cut(s)	267, 558
BtsIMutI	CAGTG	2 cut(s)	326, 573
Cfr10I	RCCGGY	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	308, 481
CviAII	CATG	2 cut(s)	213, 431
CviJI	RGCY	6 cut(s)	47, 83, 149, 366, 748, 789
CviKI_1	RGCY	6 cut(s)	47, 83, 149, 366, 748, 789
CviQI	GTAC	2 cut(s)	308, 481
DdeI	CTNAG	2 cut(s)	65, 676
DpnI	GATC	4 cut(s)	12, 31, 135, 395
DpnII	GATC	4 cut(s)	10, 29, 133, 393
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	2 cut(s)	216, 434
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	2 cut(s)	212, 430
FauI	CCCGC	1 cut(s)	624
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	102, 749
FokI	GGATG	2 cut(s)	254, 545
Fsp4HI	GCNGC	2 cut(s)	102, 749
GluI	GCNGC	2 cut(s)	102, 749
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	216, 434
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	6 cut(s)	63, 143, 167, 350, 398, 551
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	200, 560, 707
Hpy166II	GTNNAC	2 cut(s)	256, 517
Hpy188I	TCNGA	9 cut(s)	15, 40, 68, 172, 228, 393, 556, 679, 765
Hpy188III	TCNNGA	3 cut(s)	110, 624, 727
Hpy8I	GTNNAC	2 cut(s)	256, 517
Hpy99I	CGWCG	2 cut(s)	260, 409
HpyAV	CCTTC	3 cut(s)	96, 629, 748
HpyCH4III	ACNGT	3 cut(s)	287, 422, 577
HpyCH4IV	ACGT	3 cut(s)	34, 92, 306
HpyCH4V	TGCA	6 cut(s)	162, 200, 222, 326, 467, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 745
HpyF3I	CTNAG	2 cut(s)	65, 676
HpySE526I	ACGT	3 cut(s)	34, 92, 306
Hsp92II	CATG	2 cut(s)	216, 434
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	10, 29, 133, 393
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	57, 122, 276, 314, 448, 469, 555, 637
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	5 cut(s)	170, 187, 209, 402, 748
MaeII	ACGT	3 cut(s)	34, 92, 306
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	4 cut(s)	12, 31, 135, 395
MboI	GATC	4 cut(s)	10, 29, 133, 393
MboII	GAAGA	6 cut(s)	206, 235, 345, 614, 642, 715
MluCI	AATT	4 cut(s)	24, 239, 426, 681
MlyI	GAGTC	3 cut(s)	57, 359, 560
MmeI	TCCRAC	2 cut(s)	321, 453
MnlI	CCTC	4 cut(s)	11, 281, 370, 723
Mph1103I	ATGCAT	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	6 cut(s)	296, 335, 368, 425, 569, 744
MspA1I	CMGCKG	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	759
MwoI	GCNNNNNNNGC	2 cut(s)	146, 745
NdeII	GATC	4 cut(s)	10, 29, 133, 393
NlaIII	CATG	2 cut(s)	216, 434
NlaIV	GGNNCC	2 cut(s)	84, 703
NmuCI	GTSAC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	143, 167, 398
PkrI	GCNGC	2 cut(s)	103, 750
PleI	GAGTC	3 cut(s)	57, 358, 559
PpsI	GAGTC	3 cut(s)	57, 358, 559
Ppu21I	YACGTR	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	84, 703
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	309, 482
RsaNI	GTAC	2 cut(s)	308, 481
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	6 cut(s)	296, 335, 368, 425, 569, 744
SatI	GCNGC	2 cut(s)	102, 749
Sau3AI	GATC	4 cut(s)	10, 29, 133, 393
SchI	GAGTC	3 cut(s)	57, 359, 560
SetI	ASST	9 cut(s)	22, 37, 95, 151, 295, 309, 640, 720, 734
SfaNI	GCATC	5 cut(s)	170, 187, 209, 402, 748
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	4 cut(s)	24, 239, 426, 681
SsiI	CCGC	4 cut(s)	140, 617, 749, 799
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	287, 422, 577
TaiI	ACGT	3 cut(s)	37, 95, 309
TaqI	TCGA	4 cut(s)	61, 255, 273, 396
TasI	AATT	4 cut(s)	24, 239, 426, 681
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	3 cut(s)	143, 167, 398
Tru1I	TTAA	6 cut(s)	296, 335, 368, 425, 569, 744
Tru9I	TTAA	6 cut(s)	296, 335, 368, 425, 569, 744
TscAI	CASTG	2 cut(s)	333, 580
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	207, 252, 419
TspGWI	ACGGA	2 cut(s)	134, 422
TspRI	CASTG	2 cut(s)	333, 580
Vha464I	CTTAAG	1 cut(s)	743
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.