Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

60100057 .. 60103066

Gene Structure 3010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCATAAAGATAAAGGGGATCATCATCATCATCTGCGAGGTGTAGTTAGATCACATTCTGAACCGGCTTTGAAAGACAAATCTTCATACACTCCCTCCACGTCATTTGCTGCAATTGGCCATTACAATGACAACAATCTATTTTTTGAAGAGGAGGAATCTGAAACAAGTTGCGAAGATTCAGACGTTAGACGTTTTGATGAAGAAGAAGATTCATCTTGGATATCATGGTTCTGCAATCAAAAAGGGAATGAATTCTTCTGTGAAGTTGACGACGACTATATCCTAGACGATTTCAACCGCTCTGGTTTGAGAAATCAAGTGCCATTCTATGATTACGCATTGGATATGATTTTGGACGTTGAGTCTTCTGATATCGGATCATCAACTCGTAAATTGGAAATCTTCTCAACCAAAGAAGCAAAGGCTAACATACTGCCAATGGCTGCTCCTTCACGAAATACAGGATTCAAGTTCACCGCAAAATCAAAATGCGGCTTCTGTGGAAAGTTTTTGAATACTTCCATGGATTCAAGATGTTCCCATAGTGGAGAATTCTTTACAAAAGGCAGATTTGGACTTTTTTCTTGTTGGTTGACAGTCCCAGCAGGGTTACCTAGATCACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

210

Amino Acids

23.88

Weight (kDa)

5.25

Isoelectric Point (pI)

68.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	73 - 130	1.5e-16	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	303
AciI	CCGC	3 cut(s)	301, 480, 495
AclWI	GGATC	2 cut(s)	27, 388
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	254, 554
AgsI	TTSAA	6 cut(s)	73, 149, 298, 472, 517, 534
AhdI	GACNNNNNGTC	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	27, 388
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	110, 446
ApoI	RAATTY	2 cut(s)	254, 554
Asp700I	GAANNNNTTC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	97, 433
BfaI	CTAG	2 cut(s)	287, 618
BisI	GCNGC	3 cut(s)	111, 447, 496
BlsI	GCNGC	3 cut(s)	112, 448, 497
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	24, 625
BsaJI	CCNNGG	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	64
Bse8I	GATNNNNATC	2 cut(s)	24, 625
BseDI	CCNNGG	1 cut(s)	525
BseJI	GATNNNNATC	2 cut(s)	24, 625
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	97, 433
BseYI	CCCAGC	1 cut(s)	604
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	19, 50, 380, 620
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	3 cut(s)	301, 480, 495
BspANI	GGCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	27, 388
BsrBI	CCGCTC	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	4 cut(s)	19, 50, 380, 620
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	525
BstEII	GGTNACC	1 cut(s)	612
BstKTI	GATC	4 cut(s)	22, 53, 383, 623
BstMBI	GATC	4 cut(s)	19, 50, 380, 620
BstPI	GGTNACC	1 cut(s)	612
BstV1I	GCAGC	2 cut(s)	97, 433
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	2 cut(s)	228, 526
CviJI	RGCY	5 cut(s)	68, 120, 428, 446, 498
CviKI_1	RGCY	5 cut(s)	68, 120, 428, 446, 498
DpnI	GATC	4 cut(s)	21, 52, 382, 622
DpnII	GATC	4 cut(s)	19, 50, 380, 620
DriI	GACNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	525
Eco32I	GATATC	2 cut(s)	225, 376
Eco91I	GGTNACC	1 cut(s)	612
EcoO65I	GGTNACC	1 cut(s)	612
EcoRI	GAATTC	2 cut(s)	254, 554
EcoRV	GATATC	2 cut(s)	225, 376
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	2 cut(s)	231, 529
FaiI	YATR	9 cut(s)	6, 88, 229, 282, 333, 350, 434, 527, 546
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	227, 525
Fnu4HI	GCNGC	3 cut(s)	111, 447, 496
Fsp4HI	GCNGC	3 cut(s)	111, 447, 496
FspBI	CTAG	2 cut(s)	287, 618
GluI	GCNGC	3 cut(s)	111, 447, 496
GsaI	CCCAGC	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	2 cut(s)	231, 529
HincII	GTYRAC	2 cut(s)	271, 597
HindII	GTYRAC	2 cut(s)	271, 597
HinfI	GANTC	6 cut(s)	158, 179, 212, 365, 468, 530
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	271, 477, 597
Hpy188I	TCNGA	5 cut(s)	61, 163, 184, 373, 380
Hpy188III	TCNNGA	3 cut(s)	456, 534, 630
Hpy8I	GTNNAC	3 cut(s)	271, 477, 597
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	4 cut(s)	101, 186, 193, 360
HpyCH4V	TGCA	3 cut(s)	4, 113, 237
HpySE526I	ACGT	4 cut(s)	101, 186, 193, 360
Hsp92II	CATG	2 cut(s)	231, 529
Kzo9I	GATC	4 cut(s)	19, 50, 380, 620
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	5 cut(s)	78, 291, 450, 594, 618
Lsp1109I	GCAGC	2 cut(s)	97, 433
MaeI	CTAG	2 cut(s)	287, 618
MaeII	ACGT	4 cut(s)	101, 186, 193, 360
MaeIII	GTNAC	1 cut(s)	612
MalI	GATC	4 cut(s)	21, 52, 382, 622
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	4 cut(s)	19, 50, 380, 620
MboII	GAAGA	9 cut(s)	75, 161, 188, 215, 218, 221, 250, 360, 397
MfeI	CAATTG	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	4 cut(s)	114, 254, 395, 554
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	32, 106, 145, 148
Mox20I	TGGCCA	1 cut(s)	120
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	120
MspI	CCGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	4 cut(s)	19, 50, 380, 620
NlaIII	CATG	2 cut(s)	231, 529
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	5 cut(s)	158, 179, 212, 468, 530
PkrI	GCNGC	3 cut(s)	112, 448, 497
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	3 cut(s)	111, 447, 496
Sau3AI	GATC	4 cut(s)	19, 50, 380, 620
SchI	GAGTC	1 cut(s)	374
SetI	ASST	6 cut(s)	43, 104, 189, 196, 363, 619
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	4 cut(s)	114, 254, 395, 554
SsiI	CCGC	3 cut(s)	301, 480, 495
SspMI	CTAG	2 cut(s)	287, 618
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	4 cut(s)	104, 189, 196, 363
TasI	AATT	4 cut(s)	114, 254, 395, 554
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	5 cut(s)	158, 179, 212, 468, 530
TseI	GCWGC	2 cut(s)	110, 446
TspDTI	ATGAA	4 cut(s)	75, 204, 216, 267
XapI	RAATTY	2 cut(s)	254, 554
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	287, 618
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.