Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

27506349 .. 27508634

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1173300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCTAAAAATCACAGAGGTGTAATTAGATCACGTTCTGAACCGGCTTTGAATCCTAATCGACTCAGAGACAAATCTTTGGCTCCTTCGACGTCACTTGCCGCCAACCCCAATGACATAGATACATTCTATGATCAGGCGGAATCAGCTGATACAAGTTGCAAAGATTCAGAAAAAGGAAATGAATTCTTTTGTGAAGTCGAGGACGATTACATCCTCGATGATTTCAACCGTTCAGGTTTAAGAAATCATGTACCGTTCTATGATTATGCACTGGATTTAATTTTGGACGTTGAGTCTTCCAATGATGGCTTAACTGATGAGGAACAGAACAATCTGATCGAATCCGCGGCGGAGATGCTCTATGGTTTAATACATGCCAGATACATAGCAACTAACAAAGGATTGTCTGCAATGTTGGAGAAGTACAGGAACTATGATTTTGGCAGATGTCCAAGAGTTAACTGCAATAAACAACGTTGTTTGCCTGTTGGTCAGTCAGACATCCCAAGATTAAGCACCGTACAAATCTACTGTCCCAAGTGTGAAGACATTTATTCCCCACAATCCAGACACCAAGAACAAATTGATGGAGCTTACTTTGGAACCACATTTCCTCACCTTTTCTTCTTGACCTACGGGCATCTTAAGCCGCAGAAGGCGATTCAGAACTTTGTTCCGAGAATATACGGCTTCAAAGTCTGCAACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

238

Amino Acids

27.1

Weight (kDa)

5.3

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	57 - 233	2.6e-70	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	350
AciI	CCGC	6 cut(s)	102, 140, 348, 350, 353, 653
AclI	AACGTT	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	3 cut(s)	255, 428, 525
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	3 cut(s)	52, 229, 697
AhdI	GACNNNNNGTC	1 cut(s)	295
AleI	CACNNNNGTG	1 cut(s)	18
AloI	GAACNNNNNNTCC	2 cut(s)	598, 630
AluBI	AGCT	2 cut(s)	149, 596
AluI	AGCT	2 cut(s)	149, 596
Alw26I	GTCTC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
AsuHPI	GGTGA	1 cut(s)	611
BbsI	GAAGAC	2 cut(s)	291, 555
BccI	CCATC	2 cut(s)	302, 584
BceAI	ACGGC	1 cut(s)	706
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	647
BisI	GCNGC	3 cut(s)	102, 351, 653
BlsI	GCNGC	3 cut(s)	103, 352, 654
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	84, 607
BmsI	GCATC	2 cut(s)	348, 652
BpiI	GAAGAC	2 cut(s)	291, 555
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	213, 504
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	29, 133, 339
BspACI	CCGC	6 cut(s)	102, 140, 348, 350, 353, 653
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	84, 607
BspTI	CTTAAG	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	29, 133, 339
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	233, 258, 523, 536
BstACI	GRCGYC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	647
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	213, 504
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	3 cut(s)	32, 136, 342
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	29, 133, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 649
BstNSI	RCATGY	1 cut(s)	380
BstUI	CGCG	1 cut(s)	350
BstV2I	GAAGAC	2 cut(s)	291, 555
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	213, 504
BtsIMutI	CAGTG	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	43
Cfr42I	CCGCGG	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	254, 427, 524
CviAII	CATG	2 cut(s)	251, 377
CviJI	RGCY	7 cut(s)	47, 83, 149, 312, 596, 652, 693
CviKI_1	RGCY	7 cut(s)	47, 83, 149, 312, 596, 652, 693
CviQI	GTAC	3 cut(s)	254, 427, 524
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	31, 135, 341
DpnII	GATC	3 cut(s)	29, 133, 339
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EciI	GGCGGA	2 cut(s)	155, 368
EcoRI	GAATTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	254, 380
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	2 cut(s)	250, 376
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	102, 351, 653
FokI	GGATG	2 cut(s)	200, 491
Fsp4HI	GCNGC	3 cut(s)	102, 351, 653
GluI	GCNGC	3 cut(s)	102, 351, 653
HapII	CCGG	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	254, 380
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	7 cut(s)	52, 63, 143, 167, 296, 344, 664
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	7 cut(s)	40, 68, 172, 339, 502, 669, 681
Hpy188III	TCNNGA	2 cut(s)	570, 631
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	96, 652
HpyCH4III	ACNGT	4 cut(s)	233, 258, 523, 536
HpyCH4IV	ACGT	4 cut(s)	34, 92, 291, 478
HpyCH4V	TGCA	5 cut(s)	162, 272, 413, 468, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 649
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	4 cut(s)	34, 92, 291, 478
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	254, 380
Ksp22I	TGATCA	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	463
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	29, 133, 339
LmnI	GCTCC	2 cut(s)	88, 593
LpnPI	CCDG	8 cut(s)	57, 122, 222, 260, 394, 415, 501, 583
LweI	GCATC	2 cut(s)	348, 652
MaeII	ACGT	4 cut(s)	34, 92, 291, 478
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	3 cut(s)	31, 135, 341
MboI	GATC	3 cut(s)	29, 133, 339
MboII	GAAGA	3 cut(s)	291, 560, 619
MluCI	AATT	4 cut(s)	24, 185, 282, 585
MlyI	GAGTC	2 cut(s)	57, 305
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	5 cut(s)	11, 196, 227, 316, 627
MseI	TTAA	7 cut(s)	242, 281, 314, 371, 462, 515, 648
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	149, 350
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	146, 649
NdeII	GATC	3 cut(s)	29, 133, 339
NlaIII	CATG	2 cut(s)	254, 380
NlaIV	GGNNCC	2 cut(s)	84, 607
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	380
OliI	CACNNNNGTG	1 cut(s)	18
PfeI	GAWTC	5 cut(s)	52, 143, 167, 344, 664
PkrI	GCNGC	3 cut(s)	103, 352, 654
PleI	GAGTC	2 cut(s)	57, 304
PpsI	GAGTC	2 cut(s)	57, 304
Psp1406I	AACGTT	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	84, 607
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	255, 428, 525
RsaNI	GTAC	3 cut(s)	254, 427, 524
RseI	CAYNNNNRTG	1 cut(s)	18
SacII	CCGCGG	1 cut(s)	351
SaqAI	TTAA	7 cut(s)	242, 281, 314, 371, 462, 515, 648
SatI	GCNGC	3 cut(s)	102, 351, 653
Sau3AI	GATC	3 cut(s)	29, 133, 339
SchI	GAGTC	2 cut(s)	57, 305
SfaNI	GCATC	2 cut(s)	348, 652
Sfr303I	CCGCGG	1 cut(s)	351
SgrBI	CCGCGG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	4 cut(s)	24, 185, 282, 585
SsiI	CCGC	6 cut(s)	102, 140, 348, 350, 353, 653
TaaI	ACNGT	4 cut(s)	233, 258, 523, 536
TaiI	ACGT	4 cut(s)	37, 95, 294, 481
TaqI	TCGA	5 cut(s)	61, 89, 201, 219, 342
TasI	AATT	4 cut(s)	24, 185, 282, 585
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	3 cut(s)	104, 353, 655
TfiI	GAWTC	5 cut(s)	52, 143, 167, 344, 664
Tru1I	TTAA	7 cut(s)	242, 281, 314, 371, 462, 515, 648
Tru9I	TTAA	7 cut(s)	242, 281, 314, 371, 462, 515, 648
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	647
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	380
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.