Rorug01G0375600

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
48955443 .. 48961862
6420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0375600.1

Sequence Viewer

Length: 4416 bp
ATGGGGCGTCTGAAGCTGCAAAGTGGAATCAAGGCAATTGAGGAAGAACCTGAGGAATGTGATGCAACCATTTCTCATAAAGCTACTTTAGCATGCATCATTAATTCAGAAATAGGTTCTGTTTTAGCGGTTATGAGGAGGAATGTGAGATGGGGAGGACGTTATATGTCAGGTGACGATCAGCTTGAACATTCTCTAATCCAGTCACTAAAGGCGCTACGCAAACAAATCTTTTCATGGCAGCATCAGTGGCATACCATCAATCCTGCTGTGTATCTCCAGCCATTTTTGGATGTGATTAGATCGGATGAAACTGGTGCACCAATCACTGGTGTCGCTTTGTCATCTGTTTACAATATCTTAACACTTGATGTGATTGATCAGAATTCTGTAAATGTTGACGATGCCATGCACCTTTTAGTTGATGCCATCACTAGCTGTCGATTTGAGGTGACTGATCCTGCATCAGAAGAAGTGGTACTGATGAAGATACTACAGGTTCTTCTGGCTTGCATGAGGAGTAAAGCATCTGTTATGTTGAGTAATCAACATGTTTGCACTATAGTGAACACATGTTTCCGGATAGTTCATCAAGCTGGAACAAAAGGTGAATTATTGCAAAGAATAGCTCGCCACACCATGCACGAACTTGTCAGATGTATTTTCTCACACCTTCCAGATGTTCACAACACCGAAAGTGCATTGGTAAATGGAAACAATACTGTCAAGCGAGAGATTGCAGGAGTTAATAATGAGTATGCTTTTGGGAGTAGACAATTAGAGAACGGAAACATAAATTCTGAGTATGATCTTCAACAATTATCCACATATCCCGCCTCGAATGGTTCCTCTGGTCTGGTAGCATCTGGGATCGATGAAAATACAATTGGGGCTTCTGGCGGGAAGGAGGCTGTTCAATACGACTTGCAACTAATGACTGAGCCGTATGGGGTCCCTTGCATGGTGGAAATATTTCACTTTCTTTGTTCTTTGTTAAATGTTTCTGAGCATATGGGAATGGGTCCCAGATCTAATACTATAGCATTTGACGAAGATGTGCCTCTTTTCGCCTTGGTTTTAATCAATTCAGCTATAGAGTTGGGTGGGGCCTCCATTCAGCATCACCCCAAGTTATTGAATTTGGTTCAGGATGAATTGTTTCGGAATCTGATGCAATTTGGCCTATCAACTAGTCCACTTATTCTTTCAATGGTTTGCAGCATTGTTCTTAATTTGTATCACCATCTGCGCTCTGAACTTAAACTTCAGCTCGAGGCTTTCTTTTCCTGTGTGATATTGAGACTTGCACAAAGCAAGTATGGAGCTTCTTATCAACAGCAGGAGGTTGCTATGGAGGCTCTTGTTGACTTCTGCAGGCAGAAAAGTTTCATGGTGGAGATGTACGCTAACTTGGACTGTGACATAACTTGCAGTAATGTATTTGAAGAACTTGCTAATCTGTTGTCAAAGAGTGCATTCCCTGTTAATTGCCCTTTGTCTTCAATTCACATTCTTGCTTTGGATGGTCTTATTGCCGTCATTCAAGGAATGGCAGAAAGGGTAGGGAATGGATCAGTAAGTTCTGCGCATACTCCAGTGAATCTGGAAGAGTATACTCCATTCTGGATGGTGAAGTGTGACAACTACAGCGATCCTAATCATTGGGTTCCATTTGTTCGCCGGAGGAAGTACATAAAGAGAAGATTGATGATCGGAGCCGATCATTTTAACCGTGACCCAAAGAAAGGGTTGGAGTTCCTCCAAGGAACTCATCTCTTGCCTGATAAACTTGATCCTCAAAGTGTGGCCTGCTTTTTCAGGTATACAGCTGGGCTAGACAAGAATCTTGTCGGGGATTTCTTGGGAAATCATGACGAGTTTTGTGTTCAGGTTCTTCACAAATTTGCTGGTACCTTTGATTTCCAAGATATGAATTTGGATACTGCACTCCGCCTTTTCTTGGAGACGTTTCGTTTGCCTGGAGAATCACAAAAGATACAAAGGGTTCTTGAAGCATTCTCAGAGAGATACTACGAGCAATCACCTCTAATTCTAGCAAACAAGGATGCTGCTCTTCTGTTATCATATTCAATCATAATGCTCAATACAGATCAGCACAATGTTCAGGTGAAGAAGAAGATGACAGAGGAGGATTTCATTCGGAATAATAGACACATCAATGGAGGCAGTGATCTACCTCGAGATTTCCTGACAGAGCTTTATCACTCAATATGCAAGAATGAGATTCGCACTACTCCAGAACAAGGTGCTGGTTATCCTGAGATGACCCCAAGCCGGTGGATTGATTTGATGCACAAATCCAAGAAAAATGCTCCATTCATTGTATCTGATTCCAGAGCCTACCTAGACCATGATATGTTTGCTATAATGTCTGGCCCTACAATTGCTGCCATCTCTGTGGTATTTGATCATGCAGAACATGAAGAGGTTTATCAAACATGCATTGATGGATTTTTAGCTATTGCAAAGATTTCAGCATGCCACCATCTTGAAGATGTACTAGATGATTTGGTTGTGTCTCTCTGTAAGTTCACAACTCTGTTAAACCCATCATCAGTTGAGGAACCTGTGCTAGCCTTTGGTGATGACACAAAAGCTAGGATGTCAACTGTGACAGTTTTCACCATTGCCAATAGGTATGGTGATTATATTCGCACTGGTTGGAGAAATATTCTGGACTGCATCTTAAGATTGCACAAGCTTGGTCTTCTTCCTGCTCGTGTGGCTAGCGATGCAGCTGATGAGTCAGAGTTTTCTGCTGACGCAGGTCCTGGCAAGCCAATAACAAATTCTCTATCTTCTGTTCACATGCCTACTGTGGGTACTCCTAGGAGATCTTCTGGATTGATGGGTCGGTTTAGTCAGCTCTTATCTCTTGACACAGAGGAGCCGAGATCACAGCCCACTGAACAACAACTTGCTGCTCATCAACGTACCCTTCAGACTATTCAAAAGTGCCACATTGACGGCATATTTACTGAGAGCAAATTTCTGCAGGCTGAATCCTTGTTACAGCTTGCACGTGCATTGATTTGGGCAGCAGGGCGACCGCAGAAAGGGAACAGCTCTCCGGAGGACGAAGATACCGCTGTTTTCTGTTTGGAATTGCTGATTGCTATTACCCTAAATAATAGGGATAGGATTGTGCTTCTTTGGCAGGGTGTGTATGAGCACATATCAAACATTGTTCAGTCAACTGTGATGCCTTGTGCCCTGGTAGAAAAGGCTGTTTTTGGACTTCTTAGAATTTGCCAGCGGCTGCTTCCCTATAAAGAAAACCTTGCTGATGAACTGCTGAGGTCCCTGCAGCTTGTCTTAAAGCTTGATGCTCGGGTTGCCGATGCATACTGTGAGCAAATTACTCTGGAAGTCAGTCGCCTTGTGAAAGCAAATGCCTCTCACATCAGATCCTCGTTAGGGTGGCGCACAATTACATCCCTAATCTCCATCACGGCCCGCCACCCCGAAGCTTCTGAGGCTGGTTTTGACACACTGTCCTTCATTATGTCTGATGGAACCCACTTGTTGCCAGCCAATTATATTCTATGTGTTGATGCATCAAGGCAGTTTGCTGAGTCTCGTGTTGGGCAGACAGAGCGATCTCTGACCGCATTAGATCTTATGGCAGGTTCTGTTGATTGTTTGGTAAGGTGGGCCCACGAGGCTAAGCAAGCTACTAATGAGGATGAAGCTGTGAAAATGTCTCAGGATATTGGGGAAATGTGGTTGCGGCTTGTTCAGGGGTTGAGAAAAGTTTGTTTGGACCAAAGAGAAGAGGTTAGGAACCATGCTTTGTCATTGTTGCAGAAGTGCTTGACAGAAGTTGATGGGATCCCTCTTCCACATGGTCTGTGGTTACAGTGCTTTGATCTTGTAATCTTCACAATGCTTGATGACTTGCTTGAAATTGCACAAGGACACTCCCAAAAGGACTACCGGAACATGGAAGGCACACTTATCTCTGCCATGAAGCTCTTGTCCAAAGTTTTTCTGCAGCTACTATCTGACCTGTCACAATTAACAACCTTCTGCAAACTATGGCTGGGTGTTCTCAGTCGAATTGAAAAATATATGAAGGTGAAAGTTAGAGGGAAAAAAAGTGACAAGCTTCAGGACCAAGTACCAGAACTACTTAAGAACACCTTGGTTGTGATGAATTTGAAGGGAGTGCTTGTTCAGAGGAGTGCTTTAGGAGGAGATAGCTTGTGGGAGCTGACATGGTTACATGTAAACAACATTTCTCCATCCTTGCAATCAGAGGTTTTCCCTGATCAAACTTTGGAGCAGTCAGAGACCAAGACAGGCGAAACTGGGGGAGGCCTAGTATCTGATGAAGCGGGTAAAGTAGCTCCAACTGAAACGGTGTCCTCTGAAGTTTCTGGCACTGGAGGTTAG

Protein Analysis

1471

Amino Acids

164.15

Weight (kDa)

5.6

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 318 - 480 3e-40 Mon2/Sec7/BIG1-like, HUS domain
Sec7 PF01369 566 - 749 1.1e-71 Sec7 domain
TPR_28 PF23325 1249 - 1400 8.2e-14 GBF1-like, tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1587
Acc36I ACCTGC 2 cut(s) 2777, 3638
Acc65I GGTACC 1 cut(s) 1910
AccB1I GGYRCC 1 cut(s) 1910
AccB7I CCANNNNNTGG 1 cut(s) 329
AccI GTMKAC 3 cut(s) 772, 1613, 1823
AccIII TCCGGA 2 cut(s) 579, 3091
AclWI GGATC 8 cut(s) 452, 878, 1579, 1646, 1787, 3423, 3847, 3860
AcsI RAATTY 9 cut(s) 385, 796, 1138, 1901, 1933, 2809, 3008, 3267, 4177
AcuI CTGAAG 5 cut(s) 32, 1250, 2945, 4115, 4413
AcvI CACGTG 1 cut(s) 3044
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 8 cut(s) 480, 1403, 1691, 1912, 2520, 2845, 2956, 4143
AflII CTTAAG 2 cut(s) 2707, 4154
AflIII ACRYGT 3 cut(s) 550, 572, 4246
AhdI GACNNNNNGTC 1 cut(s) 3514
AhlI ACTAGT 1 cut(s) 1190
AjnI CCWGG 3 cut(s) 1978, 2791, 3234
AjuI GAANNNNNNNTTGG 4 cut(s) 870, 902, 2794, 2826
AleI CACNNNNGTG 1 cut(s) 563
AloI GAACNNNNNNTCC 2 cut(s) 4179, 4211
Alw21I GWGCWC 2 cut(s) 322, 3195
Alw26I GTCTC 6 cut(s) 1294, 1958, 2544, 3603, 3729, 4307
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 8 cut(s) 452, 878, 1579, 1646, 1787, 3423, 3847, 3860
AlwNI CAGNNNCTG 3 cut(s) 2792, 3280, 3653
Ama87I CYCGRG 3 cut(s) 1271, 2199, 3351
Aor13HI TCCGGA 2 cut(s) 579, 3091
AoxI GGCC 7 cut(s) 1107, 1180, 1806, 2395, 3474, 3675, 4339
ApaI GGGCCC 1 cut(s) 3679
ApaLI GTGCAC 1 cut(s) 318
ApoI RAATTY 9 cut(s) 385, 796, 1138, 1901, 1933, 2809, 3008, 3267, 4177
ArsI GACNNNNNNTTYG 2 cut(s) 1957, 1989
AseI ATTAAT 1 cut(s) 102
Asp700I GAANNNNTTC 3 cut(s) 972, 1158, 1385
Asp718I GGTACC 1 cut(s) 1910
AspA2I CCTAGG 1 cut(s) 2849
AspLEI GCGC 4 cut(s) 217, 1251, 1588, 3447
AsuNHI GCTAGC 2 cut(s) 2593, 2747
AvaI CYCGRG 3 cut(s) 1271, 2199, 3351
AvaII GGWCC 6 cut(s) 952, 1022, 2789, 3321, 3784, 4135
AvrII CCTAGG 1 cut(s) 2849
AxyI CCTNAGG 1 cut(s) 51
BaeGI GKGCMC 3 cut(s) 322, 3235, 3679
BaeI ACNNNNGTAYC 2 cut(s) 3096, 3129
BamHI GGATCC 1 cut(s) 3852
BanI GGYRCC 1 cut(s) 1910
BanII GRGCYC 1 cut(s) 3679
BarI GAAGNNNNNNTAC 2 cut(s) 462, 494
BauI CACGAG 3 cut(s) 2739, 3600, 3680
BbrPI CACGTG 1 cut(s) 3044
BbsI GAAGAC 2 cut(s) 1491, 2720
Bbv12I GWGCWC 2 cut(s) 322, 3195
BbvCI CCTCAGC 1 cut(s) 3317
BceAI ACGGC 4 cut(s) 928, 1520, 3004, 3489
BciT130I CCWGG 3 cut(s) 1980, 2793, 3236
BciVI GTATCC 1 cut(s) 1933
BclI TGATCA 3 cut(s) 379, 2428, 4291
BcoDI GTCTC 6 cut(s) 1294, 1958, 2544, 3603, 3729, 4307
BcuI ACTAGT 1 cut(s) 1190
BfmI CTRYAG 9 cut(s) 494, 561, 1038, 1092, 1372, 1645, 3014, 3326, 4013
BfoI RGCGCY 1 cut(s) 218
BfrI CTTAAG 2 cut(s) 2707, 4154
BfuAI ACCTGC 2 cut(s) 2777, 3638
BfuI GTATCC 1 cut(s) 1933
BglI GCCNNNNNGGC 1 cut(s) 3683
BglII AGATCT 3 cut(s) 1028, 2855, 3637
BlnI CCTAGG 1 cut(s) 2849
BlpI GCTNAGC 1 cut(s) 3687
Bme1390I CCNGG 3 cut(s) 1980, 2793, 3236
Bme18I GGWCC 6 cut(s) 952, 1022, 2789, 3321, 3784, 4135
BmeRI GACNNNNNGTC 1 cut(s) 3514
BmeT110I CYCGRG 3 cut(s) 1271, 2199, 3351
BmrFI CCNGG 3 cut(s) 1980, 2793, 3236
BmrI ACTGGG 1 cut(s) 4341
BmtI GCTAGC 2 cut(s) 2597, 2751
BmuI ACTGGG 1 cut(s) 4341
BoxI GACNNNNGTC 1 cut(s) 2787
BpiI GAAGAC 2 cut(s) 1491, 2720
BpmI CTGGAG 4 cut(s) 263, 1578, 2001, 2241
Bpu10I CCTNAGC 1 cut(s) 3317
Bpu1102I GCTNAGC 1 cut(s) 3687
Bsa29I ATCGAT 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 3044
BsaBI GATNNNNATC 1 cut(s) 1656
BsaHI GRCGYC 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 4307
BsaJI CCNNGG 5 cut(s) 1071, 1762, 2849, 3234, 4164
BsaWI WCCGGW 3 cut(s) 579, 3091, 3957
BsaXI ACNNNNNCTCC 4 cut(s) 4179, 4209, 4329, 4359
Bse118I RCCGGY 1 cut(s) 2295
Bse1I ACTGG 7 cut(s) 202, 319, 334, 1595, 2683, 4336, 4411
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 2646
Bse8I GATNNNNATC 1 cut(s) 1656
BseAI TCCGGA 2 cut(s) 579, 3091
BseBI CCWGG 3 cut(s) 1980, 2793, 3236
BseCI ATCGAT 1 cut(s) 873
BseDI CCNNGG 5 cut(s) 1071, 1762, 2849, 3234, 4164
BseJI GATNNNNATC 1 cut(s) 1656
BseMI GCAATG 1 cut(s) 2646
BseNI ACTGG 7 cut(s) 202, 319, 334, 1595, 2683, 4336, 4411
BseRI GAGGAG 6 cut(s) 151, 532, 2162, 2921, 4216, 4230
BseSI GKGCMC 3 cut(s) 322, 3235, 3679
BseYI CCCAGC 2 cut(s) 1829, 4063
BsgI GTGCAG 1 cut(s) 1929
Bsh1285I CGRYCG 1 cut(s) 3071
BshFI GGCC 7 cut(s) 1109, 1182, 1808, 2397, 3476, 3677, 4341
BshNI GGYRCC 1 cut(s) 1910
BshVI ATCGAT 1 cut(s) 873
BsiEI CGRYCG 1 cut(s) 3071
BsiHKAI GWGCWC 2 cut(s) 322, 3195
BsiHKCI CYCGRG 3 cut(s) 1271, 2199, 3351
BsiSI CCGG 5 cut(s) 580, 1681, 2296, 3092, 3958
BslFI GGGAC 3 cut(s) 938, 1008, 3307
BsmAI GTCTC 6 cut(s) 1294, 1958, 2544, 3603, 3729, 4307
BsmBI CGTCTC 1 cut(s) 1958
BsmFI GGGAC 3 cut(s) 938, 1008, 3307
BsmI GAATGC 2 cut(s) 1475, 2015
BsnI GGCC 7 cut(s) 1109, 1182, 1808, 2397, 3476, 3677, 4341
Bso31I GGTCTC 1 cut(s) 4307
BsoBI CYCGRG 3 cut(s) 1271, 2199, 3351
Bsp120I GGGCCC 1 cut(s) 3675
Bsp1286I GDGCHC 4 cut(s) 322, 3195, 3235, 3679
Bsp13I TCCGGA 2 cut(s) 579, 3091
Bsp1720I GCTNAGC 1 cut(s) 3687
BspANI GGCC 7 cut(s) 1109, 1182, 1808, 2397, 3476, 3677, 4341
BspDI ATCGAT 1 cut(s) 873
BspEI TCCGGA 2 cut(s) 579, 3091
BspHI TCATGA 1 cut(s) 1870
BspMAI CTGCAG 4 cut(s) 1376, 3018, 3330, 4017
BspMI ACCTGC 2 cut(s) 2777, 3638
BspOI GCTAGC 2 cut(s) 2597, 2751
BspPI GGATC 8 cut(s) 452, 878, 1579, 1646, 1787, 3423, 3847, 3860
BspQI GCTCTTC 1 cut(s) 2079
BspT107I GGYRCC 1 cut(s) 1910
BspTI CTTAAG 2 cut(s) 2707, 4154
BspTNI GGTCTC 1 cut(s) 4307
BsrDI GCAATG 1 cut(s) 2646
BsrFI RCCGGY 1 cut(s) 2295
BsrI ACTGG 7 cut(s) 202, 319, 334, 1595, 2683, 4336, 4411
BssAI RCCGGY 1 cut(s) 2295
BssECI CCNNGG 5 cut(s) 1071, 1762, 2849, 3234, 4164
BssNAI GTATAC 2 cut(s) 1614, 1824
BssNI GRCGYC 1 cut(s) 7
BssSI CACGAG 3 cut(s) 2739, 3600, 3680
BssT1I CCWWGG 4 cut(s) 1071, 1762, 2849, 4164
Bst1107I GTATAC 2 cut(s) 1614, 1824
Bst2BI CACGAG 3 cut(s) 2739, 3600, 3680
Bst2UI CCWGG 3 cut(s) 1980, 2793, 3236
Bst6I CTCTTC 5 cut(s) 1602, 2079, 2439, 3789, 3864
BstACI GRCGYC 1 cut(s) 7
BstAFI CTTAAG 2 cut(s) 2707, 4154
BstBAI YACGTR 1 cut(s) 3044
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 4 cut(s) 217, 1251, 1588, 3447
BstMAI GTCTC 6 cut(s) 1294, 1958, 2544, 3603, 3729, 4307
BstMCI CGRYCG 1 cut(s) 3071
BstNI CCWGG 3 cut(s) 1980, 2793, 3236
BstNSI RCATGY 7 cut(s) 96, 554, 576, 2463, 2502, 2833, 4250
BstPAI GACNNNNGTC 1 cut(s) 2787
BstSCI CCNGG 3 cut(s) 1978, 2791, 3234
BstSFI CTRYAG 9 cut(s) 494, 561, 1038, 1092, 1372, 1645, 3014, 3326, 4013
BstSLI GKGCMC 3 cut(s) 322, 3235, 3679
BstV2I GAAGAC 2 cut(s) 1491, 2720
BstX2I RGATCY 5 cut(s) 1028, 2855, 3428, 3637, 3852
BstXI CCANNNNNNTGG 2 cut(s) 2298, 2419
BstYI RGATCY 5 cut(s) 1028, 2855, 3428, 3637, 3852
BstZ17I GTATAC 2 cut(s) 1614, 1824
Bsu15I ATCGAT 1 cut(s) 873
Bsu36I CCTNAGG 1 cut(s) 51
BsuI GTATCC 1 cut(s) 1933
BsuRI GGCC 7 cut(s) 1109, 1182, 1808, 2397, 3476, 3677, 4341
BsuTUI ATCGAT 1 cut(s) 873
BtgZI GCGATG 1 cut(s) 2766
BtsI GCAGTG 1 cut(s) 2194
BtsIMutI CAGTG 9 cut(s) 254, 327, 1602, 2194, 2676, 2925, 3512, 3887, 4404
BveI ACCTGC 2 cut(s) 2777, 3638
CaiI CAGNNNCTG 3 cut(s) 2792, 3280, 3653
CciI TCATGA 1 cut(s) 1870
CfoI GCGC 4 cut(s) 217, 1251, 1588, 3447
Cfr10I RCCGGY 1 cut(s) 2295
ClaI ATCGAT 1 cut(s) 873
CseI GACGC 1 cut(s) 2792
Csp6I GTAC 8 cut(s) 479, 1402, 1690, 1911, 2519, 2844, 2955, 4142
CviQI GTAC 8 cut(s) 479, 1402, 1690, 1911, 2519, 2844, 2955, 4142
DriI GACNNNNNGTC 1 cut(s) 3514
Eam1104I CTCTTC 5 cut(s) 1602, 2079, 2439, 3789, 3864
Eam1105I GACNNNNNGTC 1 cut(s) 3514
EarI CTCTTC 5 cut(s) 1602, 2079, 2439, 3789, 3864
EciI GGCGGA 1 cut(s) 1940
Eco130I CCWWGG 4 cut(s) 1071, 1762, 2849, 4164
Eco147I AGGCCT 1 cut(s) 4341
Eco24I GRGCYC 1 cut(s) 3679
Eco31I GGTCTC 1 cut(s) 4307
Eco47I GGWCC 6 cut(s) 952, 1022, 2789, 3321, 3784, 4135
Eco57I CTGAAG 5 cut(s) 32, 1250, 2945, 4115, 4413
Eco72I CACGTG 1 cut(s) 3044
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 3 cut(s) 1271, 2199, 3351
EcoO109I RGGNCCY 5 cut(s) 952, 1022, 1107, 2789, 3321
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 1978, 2791, 3234
EcoT14I CCWWGG 4 cut(s) 1071, 1762, 2849, 4164
EcoT22I ATGCAT 4 cut(s) 98, 2465, 3367, 3580
EcoT38I GRGCYC 1 cut(s) 3679
ErhI CCWWGG 4 cut(s) 1071, 1762, 2849, 4164
Esp3I CGTCTC 1 cut(s) 1958
FalI AAGNNNNNCTT 6 cut(s) 3285, 3317, 3960, 3992, 4148, 4180
FaqI GGGAC 3 cut(s) 938, 1008, 3307
FauI CCCGC 4 cut(s) 841, 893, 3485, 4351
FauNDI CATATG 1 cut(s) 1011
FbaI TGATCA 3 cut(s) 379, 2428, 4291
FblI GTMKAC 3 cut(s) 772, 1613, 1823
FriOI GRGCYC 1 cut(s) 3679
FspI TGCGCA 1 cut(s) 1587
GlaI GCGC 4 cut(s) 216, 1250, 1587, 3446
GsaI CCCAGC 2 cut(s) 1833, 4067
GsuI CTGGAG 4 cut(s) 263, 1578, 2001, 2241
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 7 cut(s) 1109, 1182, 1808, 2397, 3476, 3677, 4341
HapII CCGG 5 cut(s) 580, 1681, 2296, 3092, 3958
HgaI GACGC 1 cut(s) 2792
HhaI GCGC 4 cut(s) 217, 1251, 1588, 3447
Hin1I GRCGYC 1 cut(s) 7
Hin6I GCGC 4 cut(s) 215, 1249, 1586, 3445
HinP1I GCGC 4 cut(s) 215, 1249, 1586, 3445
HincII GTYRAC 4 cut(s) 400, 1366, 2628, 3216
HindII GTYRAC 4 cut(s) 400, 1366, 2628, 3216
HindIII AAGCTT 4 cut(s) 2720, 3341, 3489, 4127
HpaII CCGG 5 cut(s) 580, 1681, 2296, 3092, 3958
HpyAV CCTTC 8 cut(s) 683, 898, 2969, 3529, 3962, 4057, 4090, 4177
HpyCH4IV ACGT 4 cut(s) 160, 1967, 2953, 3043
HpySE526I ACGT 4 cut(s) 160, 1967, 2953, 3043
Hsp92I GRCGYC 1 cut(s) 7
HspAI GCGC 4 cut(s) 215, 1249, 1586, 3445
KflI GGGWCCC 2 cut(s) 952, 1022
Kpn2I TCCGGA 2 cut(s) 579, 3091
KpnI GGTACC 1 cut(s) 1914
Ksp22I TGATCA 3 cut(s) 379, 2428, 4291
LguI GCTCTTC 1 cut(s) 2079
LmnI GCTCC 7 cut(s) 1322, 1715, 2338, 2908, 4231, 4303, 4375
MaeII ACGT 4 cut(s) 160, 1967, 2953, 3043
MfeI CAATTG 3 cut(s) 36, 885, 2403
MflI RGATCY 5 cut(s) 1028, 2855, 3428, 3637, 3852
MhlI GDGCHC 4 cut(s) 322, 3195, 3235, 3679
MlyI GAGTC 2 cut(s) 2774, 3605
MmeI TCCRAC 3 cut(s) 1731, 2663, 4397
Mph1103I ATGCAT 4 cut(s) 98, 2465, 3367, 3580
MroI TCCGGA 2 cut(s) 579, 3091
MroXI GAANNNNTTC 3 cut(s) 972, 1158, 1385
MslI CAYNNNNRTG 3 cut(s) 563, 2178, 2417
MspA1I CMGCKG 4 cut(s) 1829, 2759, 3110, 3277
MspCI CTTAAG 2 cut(s) 2707, 4154
MspI CCGG 5 cut(s) 580, 1681, 2296, 3092, 3958
MspR9I CCNGG 3 cut(s) 1980, 2793, 3236
MunI CAATTG 3 cut(s) 36, 885, 2403
Mva1269I GAATGC 2 cut(s) 1475, 2015
MvaI CCWGG 3 cut(s) 1980, 2793, 3236
NdeI CATATG 1 cut(s) 1011
NheI GCTAGC 2 cut(s) 2593, 2747
NmeAIII GCCGAG 1 cut(s) 2937
NmuCI GTSAC 9 cut(s) 173, 204, 451, 1418, 1637, 1733, 2632, 4032, 4121
NsbI TGCGCA 1 cut(s) 1587
NsiI ATGCAT 4 cut(s) 98, 2465, 3367, 3580
NspI RCATGY 7 cut(s) 96, 554, 576, 2463, 2502, 2833, 4250
OliI CACNNNNGTG 1 cut(s) 563
PaeI GCATGC 2 cut(s) 96, 2502
PaeR7I CTCGAG 2 cut(s) 1271, 2199
PagI TCATGA 1 cut(s) 1870
PceI AGGCCT 1 cut(s) 4341
PciI ACATGT 3 cut(s) 550, 572, 4246
PciSI GCTCTTC 1 cut(s) 2079
PctI GAATGC 2 cut(s) 1475, 2015
PdmI GAANNNNTTC 3 cut(s) 972, 1158, 1385
PfeI GAWTC 8 cut(s) 27, 1165, 1600, 1843, 1985, 2245, 2351, 3023
PflMI CCANNNNNTGG 1 cut(s) 329
PleI GAGTC 2 cut(s) 2773, 3604
PmaCI CACGTG 1 cut(s) 3044
PmlI CACGTG 1 cut(s) 3044
PpsI GAGTC 2 cut(s) 2773, 3604
Ppu21I YACGTR 1 cut(s) 3044
PpuMI RGGWCCY 4 cut(s) 952, 1022, 2789, 3321
PscI ACATGT 3 cut(s) 550, 572, 4246
PshAI GACNNNNGTC 1 cut(s) 2787
PshBI ATTAAT 1 cut(s) 102
Psp5II RGGWCCY 4 cut(s) 952, 1022, 2789, 3321
Psp6I CCWGG 3 cut(s) 1978, 2791, 3234
PspCI CACGTG 1 cut(s) 3044
PspFI CCCAGC 2 cut(s) 1829, 4063
PspGI CCWGG 3 cut(s) 1978, 2791, 3234
PspOMI GGGCCC 1 cut(s) 3675
PspPPI RGGWCCY 4 cut(s) 952, 1022, 2789, 3321
PspXI VCTCGAGB 1 cut(s) 1271
PstI CTGCAG 4 cut(s) 1376, 3018, 3330, 4017
PstNI CAGNNNCTG 3 cut(s) 2792, 3280, 3653
PsuI RGATCY 5 cut(s) 1028, 2855, 3428, 3637, 3852
PvuII CAGCTG 2 cut(s) 1829, 2759
RsaI GTAC 8 cut(s) 480, 1403, 1691, 1912, 2520, 2845, 2956, 4143
RsaNI GTAC 8 cut(s) 479, 1402, 1690, 1911, 2519, 2844, 2955, 4142
RseI CAYNNNNRTG 3 cut(s) 563, 2178, 2417
SapI GCTCTTC 1 cut(s) 2079
SchI GAGTC 2 cut(s) 2774, 3605
ScrFI CCNGG 3 cut(s) 1980, 2793, 3236
SduI GDGCHC 4 cut(s) 322, 3195, 3235, 3679
SfcI CTRYAG 9 cut(s) 494, 561, 1038, 1092, 1372, 1645, 3014, 3326, 4013
Sfr274I CTCGAG 2 cut(s) 1271, 2199
SinI GGWCC 6 cut(s) 952, 1022, 2789, 3321, 3784, 4135
SlaI CTCGAG 2 cut(s) 1271, 2199
SmiMI CAYNNNNRTG 3 cut(s) 563, 2178, 2417
SmlI CTYRAG 4 cut(s) 1271, 2199, 2707, 4154
SmoI CTYRAG 4 cut(s) 1271, 2199, 2707, 4154
SpeI ACTAGT 1 cut(s) 1190
SphI GCATGC 2 cut(s) 96, 2502
SseBI AGGCCT 1 cut(s) 4341
SspI AATATT 2 cut(s) 972, 2692
StuI AGGCCT 1 cut(s) 4341
StyD4I CCNGG 3 cut(s) 1978, 2791, 3234
StyI CCWWGG 4 cut(s) 1071, 1762, 2849, 4164
TaiI ACGT 4 cut(s) 163, 1970, 2956, 3046
TaqI TCGA 6 cut(s) 442, 839, 873, 1272, 2200, 4078
TatI WGTACW 2 cut(s) 1689, 2518
TauI GCSGC 2 cut(s) 3280, 3754
TfiI GAWTC 8 cut(s) 27, 1165, 1600, 1843, 1985, 2245, 2351, 3023
TscAI CASTG 9 cut(s) 254, 334, 1602, 2194, 2683, 2932, 3519, 3887, 4411
TseFI GTSAC 9 cut(s) 173, 204, 451, 1418, 1637, 1733, 2632, 4032, 4121
Tsp45I GTSAC 9 cut(s) 173, 204, 451, 1418, 1637, 1733, 2632, 4032, 4121
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 9 cut(s) 254, 334, 1602, 2194, 2683, 2932, 3519, 3887, 4411
Van91I CCANNNNNTGG 1 cut(s) 329
Vha464I CTTAAG 2 cut(s) 2707, 4154
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 6 cut(s) 952, 1022, 2789, 3321, 3784, 4135
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 9 cut(s) 385, 796, 1138, 1901, 1933, 2809, 3008, 3267, 4177
XceI RCATGY 7 cut(s) 96, 554, 576, 2463, 2502, 2833, 4250
XcmI CCANNNNNNNNNTGG 1 cut(s) 3870
XhoI CTCGAG 2 cut(s) 1271, 2199
XmaJI CCTAGG 1 cut(s) 2849
XmiI GTMKAC 3 cut(s) 772, 1613, 1823
XmnI GAANNNNTTC 3 cut(s) 972, 1158, 1385
Zsp2I ATGCAT 4 cut(s) 98, 2465, 3367, 3580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.