Rroxscaffold_4G00284520

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002782
Physical Location & Seq
Forward (+)
6113299 .. 6116316
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284520.1

Sequence Viewer

Length: 1170 bp
ATGGTCGACAACAACCGCTGCAACCTCACCCTCAGGCCTAATGAATCTTCAATATATGGCCGAAGACCTTTCATGTATAAGAAGCTGCTTGCTAGTTCCCATCACACCTTAAATAGCTTATTGATTCATAACAAGCAAGGCATGGAAAGTAAACAGTTTGCAATATTCTTCCTTCTGATATTTGCTGGTCTAGTATTGTTCATGTTCAATCAAAGCTCGAACGGATCCAATCCATTCTTTCTTGCCCGCCAAATATGTCAAACCTCTAAACAGGTCAATGACACGAGCAGGGGCGATGCTCTTGAATCAGCTTTGTCTGAGGCTTCCATGGAAAACAAGACTGTGATCATTGCGATTATAAACAAAGCCTACGTAGAAGGAGATAAGTCCATGCTTGACTTGTTTTTAGATGGTTTTTGGCTTGGAGAAGACACAAGGAACTTGATTAATCACCTACTTCTTGTGGCGGCCGATCAAACATCCTTTGAACGCTGCAAGTTTCTCCATCTTCACTGCTACAAGCTCGAGACTGCCGGAGTCGATTTTGATGCTGAGGAAGTGTACATGTCTCAAGATTTTATCAAGATGATGTGGAGGAGAACTCTCTTTCTCGGAGAAACGCTCAAGAAAGGCTATAGTTTCATCTTCACGGATGCGGATGTAATGTGGCTACGGAATCCATTTCCAAGGCTCAAGTACAACCAAAGCATAGATAGCTTAGATCTCCAGATCAGTACTGATAAATTCAATGGCGACCAGTGGTCTGAAGCCAACCCCATCAACTCAGGCTTCTACATTGTGCGGTCCAACAACAGAACAATCTCATTATTCGACAAGTGGTACGCCAGGAAAAACGACTCCGTCGGATTGAAAGAGCAGGATGTTCTAAACAACATGATCCGGGAAGGTGTTTTCAAGGAGTTCGGCCTCAGAGTGAGGTTTTTGGACACCCTTTATTTCAGTGGCTTTTGTGAAGTCAGCAGGGACTTCAAAGCTGTCACAACCGTTCATGCTAACTGTTGCCGCACAATAAGCGCCAAGGTGGTGGATCTGACGGCTGTGATTCACGACTGGAAGAGGTTCAAGAGCTTAACTAACTCAAATCAGACGTCGAATTTGCAGTGGACTAACCATGTAGCCTGTCTTAACTCCTGGAAACGTCACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

389

Amino Acids

45.03

Weight (kDa)

8.79

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 148 - 350 7.4e-63 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AatII GACGTC 1 cut(s) 1112
AccI GTMKAC 1 cut(s) 6
AciI CCGC 6 cut(s) 16, 247, 467, 656, 802, 1024
AclWI GGATC 4 cut(s) 219, 232, 892, 1056
AcoI YGGCCR 2 cut(s) 58, 468
AcsI RAATTY 2 cut(s) 743, 1114
AcuI CTGAAG 1 cut(s) 786
AcyI GRCGYC 1 cut(s) 1109
AfaI GTAC 4 cut(s) 563, 698, 736, 842
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 9 cut(s) 51, 208, 305, 488, 748, 871, 916, 991, 1084
AhdI GACNNNNNGTC 1 cut(s) 760
AjnI CCWGG 2 cut(s) 845, 1151
AluBI AGCT 8 cut(s) 85, 117, 216, 311, 523, 717, 995, 1089
AluI AGCT 8 cut(s) 85, 117, 216, 311, 523, 717, 995, 1089
Alw26I GTCTC 2 cut(s) 521, 573
AlwI GGATC 4 cut(s) 219, 232, 892, 1056
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 4 cut(s) 35, 58, 468, 925
ApeKI GCWGC 3 cut(s) 18, 85, 492
ApoI RAATTY 2 cut(s) 743, 1114
ArsI GACNNNNNNTTYG 4 cut(s) 1094, 1099, 1126, 1131
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 1079
AspLEI GCGC 1 cut(s) 1037
AspS9I GGNCC 1 cut(s) 804
AsuC2I CCSGG 1 cut(s) 902
AsuHPI GGTGA 3 cut(s) 19, 443, 1154
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 1 cut(s) 804
AxyI CCTNAGG 1 cut(s) 32
BamHI GGATCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 70, 435
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 3 cut(s) 5, 72, 479
BccI CCATC 4 cut(s) 108, 404, 513, 785
BceAI ACGGC 1 cut(s) 1071
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 2 cut(s) 847, 1153
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 902
BcoDI GTCTC 2 cut(s) 521, 573
BfaI CTAG 2 cut(s) 93, 191
BfmI CTRYAG 1 cut(s) 634
BfoI RGCGCY 1 cut(s) 1038
BglII AGATCT 1 cut(s) 721
BisI GCNGC 5 cut(s) 19, 86, 468, 493, 1024
BlsI GCNGC 5 cut(s) 20, 87, 469, 494, 1025
BmcAI AGTACT 1 cut(s) 736
Bme1390I CCNGG 3 cut(s) 847, 902, 1153
Bme18I GGWCC 1 cut(s) 804
BmeRI GACNNNNNGTC 1 cut(s) 760
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 804
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 3 cut(s) 847, 902, 1153
BmsI GCATC 3 cut(s) 286, 538, 643
BpiI GAAGAC 2 cut(s) 70, 435
BplI GAGNNNNNCTC 4 cut(s) 586, 618, 606, 638
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 555, 608, 677
BpuMI CCSGG 1 cut(s) 902
BsaAI YACGTR 1 cut(s) 373
BsaHI GRCGYC 1 cut(s) 1109
BsaJI CCNNGG 3 cut(s) 327, 686, 1038
Bse1I ACTGG 2 cut(s) 757, 1076
Bse21I CCTNAGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 2 cut(s) 847, 1153
BseDI CCNNGG 3 cut(s) 327, 686, 1038
BseGI GGATG 4 cut(s) 479, 658, 664, 886
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 5 cut(s) 46, 309, 543, 798, 943
BseNI ACTGG 2 cut(s) 757, 1076
BseRI GAGGAG 1 cut(s) 610
BseX3I CGGCCG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 5, 72, 479
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 4 cut(s) 37, 60, 470, 927
BsiEI CGRYCG 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 2 cut(s) 534, 901
BslFI GGGAC 1 cut(s) 998
BsmAI GTCTC 2 cut(s) 521, 573
BsmFI GGGAC 1 cut(s) 998
BsnI GGCC 4 cut(s) 37, 60, 470, 927
BsoBI CYCGRG 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 6 cut(s) 16, 247, 467, 656, 802, 1024
BspANI GGCC 4 cut(s) 37, 60, 470, 927
BspCNI CTCAG 5 cut(s) 45, 310, 544, 797, 942
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 4 cut(s) 219, 232, 892, 1056
BsrDI GCAATG 1 cut(s) 348
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 2 cut(s) 757, 1076
BssECI CCNNGG 3 cut(s) 327, 686, 1038
BssMI GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
BssNI GRCGYC 1 cut(s) 1109
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 3 cut(s) 327, 686, 1038
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 847, 1153
Bst4CI ACNGT 5 cut(s) 156, 343, 1006, 1019, 1166
Bst6I CTCTTC 1 cut(s) 1070
BstACI GRCGYC 1 cut(s) 1109
BstAUI TGTACA 1 cut(s) 561
BstBAI YACGTR 1 cut(s) 373
BstC8I GCNNGC 2 cut(s) 90, 247
BstDEI CTNAG 6 cut(s) 32, 318, 552, 718, 784, 929
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 4 cut(s) 479, 658, 664, 886
BstH2I RGCGCY 1 cut(s) 1038
BstHHI GCGC 1 cut(s) 1037
BstKTI GATC 7 cut(s) 227, 348, 475, 724, 732, 900, 1051
BstMAI GTCTC 2 cut(s) 521, 573
BstMBI GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 2 cut(s) 714, 1032
BstNI CCWGG 2 cut(s) 847, 1153
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 3 cut(s) 845, 900, 1151
BstSFI CTRYAG 1 cut(s) 634
BstSNI TACGTA 1 cut(s) 373
BstV1I GCAGC 3 cut(s) 5, 72, 479
BstV2I GAAGAC 2 cut(s) 70, 435
BstX2I RGATCY 3 cut(s) 224, 721, 1048
BstXI CCANNNNNNTGG 1 cut(s) 1045
BstYI RGATCY 3 cut(s) 224, 721, 1048
BstZI CGGCCG 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 37, 60, 470, 927
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 479, 658, 664, 886
BtsI GCAGTG 2 cut(s) 511, 1127
BtsIMutI CAGTG 4 cut(s) 511, 764, 967, 1127
Cac8I GCNNGC 2 cut(s) 90, 247
CfoI GCGC 1 cut(s) 1037
Cfr13I GGNCC 1 cut(s) 804
Csp6I GTAC 4 cut(s) 562, 697, 735, 841
CviAII CATG 9 cut(s) 73, 142, 202, 328, 391, 565, 895, 1010, 1133
CviQI GTAC 4 cut(s) 562, 697, 735, 841
DdeI CTNAG 6 cut(s) 32, 318, 552, 718, 784, 929
DpnI GATC 7 cut(s) 226, 347, 474, 723, 731, 899, 1050
DpnII GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
DriI GACNNNNNGTC 1 cut(s) 760
EaeI YGGCCR 2 cut(s) 58, 468
EagI CGGCCG 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 1070
Eam1105I GACNNNNNGTC 1 cut(s) 760
EarI CTCTTC 1 cut(s) 1070
EclXI CGGCCG 1 cut(s) 468
Eco105I TACGTA 1 cut(s) 373
Eco130I CCWWGG 3 cut(s) 327, 686, 1038
Eco147I AGGCCT 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 804
Eco52I CGGCCG 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 845, 1151
EcoT14I CCWWGG 3 cut(s) 327, 686, 1038
ErhI CCWWGG 3 cut(s) 327, 686, 1038
FaeI CATG 9 cut(s) 76, 145, 205, 331, 394, 568, 898, 1013, 1136
FaqI GGGAC 1 cut(s) 998
FatI CATG 9 cut(s) 72, 141, 201, 327, 390, 564, 894, 1009, 1132
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 1 cut(s) 345
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 5 cut(s) 19, 86, 468, 493, 1024
FokI GGATG 4 cut(s) 466, 665, 671, 893
Fsp4HI GCNGC 5 cut(s) 19, 86, 468, 493, 1024
FspBI CTAG 2 cut(s) 93, 191
GlaI GCGC 1 cut(s) 1036
GluI GCNGC 5 cut(s) 19, 86, 468, 493, 1024
GsuI CTGGAG 1 cut(s) 710
HaeII RGCGCY 1 cut(s) 1038
HaeIII GGCC 4 cut(s) 37, 60, 470, 927
HapII CCGG 2 cut(s) 534, 901
HhaI GCGC 1 cut(s) 1037
Hin1I GRCGYC 1 cut(s) 1109
Hin1II CATG 9 cut(s) 76, 145, 205, 331, 394, 568, 898, 1013, 1136
Hin6I GCGC 1 cut(s) 1035
HinP1I GCGC 1 cut(s) 1035
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 7 cut(s) 44, 124, 305, 537, 676, 857, 1063
HpaII CCGG 2 cut(s) 534, 901
HphI GGTGA 3 cut(s) 19, 443, 1154
Hpy166II GTNNAC 4 cut(s) 7, 152, 562, 1125
Hpy188I TCNGA 8 cut(s) 177, 319, 614, 766, 866, 932, 1053, 1107
Hpy188III TCNNGA 8 cut(s) 302, 526, 572, 583, 625, 727, 1067, 1084
Hpy8I GTNNAC 4 cut(s) 7, 152, 562, 1125
Hpy99I CGWCG 2 cut(s) 866, 1114
HpyAV CCTTC 3 cut(s) 182, 371, 899
HpyCH4III ACNGT 5 cut(s) 156, 343, 1006, 1019, 1166
HpyCH4IV ACGT 3 cut(s) 372, 1109, 1159
HpyCH4V TGCA 4 cut(s) 21, 161, 495, 1120
HpyF10VI GCNNNNNNNGC 2 cut(s) 714, 1032
HpyF3I CTNAG 6 cut(s) 32, 318, 552, 718, 784, 929
HpySE526I ACGT 3 cut(s) 372, 1109, 1159
Hsp92I GRCGYC 1 cut(s) 1109
Hsp92II CATG 9 cut(s) 76, 145, 205, 331, 394, 568, 898, 1013, 1136
HspAI GCGC 1 cut(s) 1035
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
Lsp1109I GCAGC 3 cut(s) 5, 72, 479
LweI GCATC 3 cut(s) 286, 538, 643
MaeI CTAG 2 cut(s) 93, 191
MaeII ACGT 3 cut(s) 372, 1109, 1159
MaeIII GTNAC 2 cut(s) 997, 1160
MalI GATC 7 cut(s) 226, 347, 474, 723, 731, 899, 1050
MboI GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
MboII GAAGA 7 cut(s) 39, 75, 160, 440, 500, 637, 1087
MflI RGATCY 3 cut(s) 224, 721, 1048
MluCI AATT 2 cut(s) 743, 1114
MlyI GAGTC 2 cut(s) 546, 851
MmeI TCCRAC 2 cut(s) 831, 844
MnlI CCTC 9 cut(s) 35, 41, 274, 313, 547, 588, 930, 938, 1071
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 5 cut(s) 110, 447, 1091, 1146, 1168
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 2 cut(s) 534, 901
MspR9I CCNGG 3 cut(s) 847, 902, 1153
MvaI CCWGG 2 cut(s) 847, 1153
MwoI GCNNNNNNNGC 2 cut(s) 714, 1032
NciI CCSGG 1 cut(s) 902
NcoI CCATGG 1 cut(s) 327
NdeII GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
NlaIII CATG 9 cut(s) 76, 145, 205, 331, 394, 568, 898, 1013, 1136
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 997, 1160
NspI RCATGY 1 cut(s) 568
PaeR7I CTCGAG 1 cut(s) 524
PceI AGGCCT 1 cut(s) 37
PciI ACATGT 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 5 cut(s) 44, 124, 305, 676, 1063
PflFI GACNNNGTC 1 cut(s) 860
PfoI TCCNGGA 2 cut(s) 900, 1151
PkrI GCNGC 5 cut(s) 20, 87, 469, 494, 1025
PleI GAGTC 2 cut(s) 545, 851
PpsI GAGTC 2 cut(s) 545, 851
Ppu21I YACGTR 1 cut(s) 373
PscI ACATGT 1 cut(s) 564
PshBI ATTAAT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 845, 1151
PspGI CCWGG 2 cut(s) 845, 1151
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 804
PsuI RGATCY 3 cut(s) 224, 721, 1048
PsyI GACNNNGTC 1 cut(s) 860
RsaI GTAC 4 cut(s) 563, 698, 736, 842
RsaNI GTAC 4 cut(s) 562, 697, 735, 841
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 5 cut(s) 110, 447, 1091, 1146, 1168
SatI GCNGC 5 cut(s) 19, 86, 468, 493, 1024
Sau3AI GATC 7 cut(s) 224, 345, 472, 721, 729, 897, 1048
Sau96I GGNCC 1 cut(s) 804
ScaI AGTACT 1 cut(s) 736
SchI GAGTC 2 cut(s) 546, 851
ScrFI CCNGG 3 cut(s) 847, 902, 1153
SfaNI GCATC 3 cut(s) 286, 538, 643
SfcI CTRYAG 1 cut(s) 634
Sfr274I CTCGAG 1 cut(s) 524
SinI GGWCC 1 cut(s) 804
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 4 cut(s) 524, 570, 623, 692
SmoI CTYRAG 4 cut(s) 524, 570, 623, 692
SnaBI TACGTA 1 cut(s) 373
Sse9I AATT 2 cut(s) 743, 1114
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 6 cut(s) 16, 247, 467, 656, 802, 1024
SspI AATATT 1 cut(s) 165
SspMI CTAG 2 cut(s) 93, 191
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 3 cut(s) 845, 900, 1151
StyI CCWWGG 3 cut(s) 327, 686, 1038
TaaI ACNGT 5 cut(s) 156, 343, 1006, 1019, 1166
TaiI ACGT 3 cut(s) 375, 1112, 1162
TaqI TCGA 6 cut(s) 6, 218, 525, 540, 831, 1112
TasI AATT 2 cut(s) 743, 1114
TatI WGTACW 3 cut(s) 561, 696, 734
TauI GCSGC 2 cut(s) 470, 1026
TfiI GAWTC 5 cut(s) 44, 124, 305, 676, 1063
Tru1I TTAA 5 cut(s) 110, 447, 1091, 1146, 1168
Tru9I TTAA 5 cut(s) 110, 447, 1091, 1146, 1168
TscAI CASTG 4 cut(s) 518, 764, 967, 1127
TseFI GTSAC 2 cut(s) 997, 1160
TseI GCWGC 3 cut(s) 18, 85, 492
Tsp45I GTSAC 2 cut(s) 997, 1160
TspDTI ATGAA 6 cut(s) 57, 61, 116, 190, 631, 998
TspGWI ACGGA 4 cut(s) 237, 665, 688, 850
TspRI CASTG 4 cut(s) 518, 764, 967, 1127
Tth111I GACNNNGTC 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 804
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 743, 1114
XceI RCATGY 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 2 cut(s) 93, 191
ZraI GACGTC 1 cut(s) 1110
ZrmI AGTACT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.