Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Reverse (-)

25596825 .. 25597286

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1220400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTCTTTGGGGATCCATGGAACGTCAGTCAGTTAATCAACACTGGCTTCTACTACATCAGATCCAATAATAAGACCATTGCACTGTTTGATAGATGGTACACCTCCAAGGACAATGCCACGGGACTAAAGGAGCAGGATGTCCTATTGAACCTAATCCGAGGGGGTATTGTTGACGAGTTGGGACTTAGGGTAAGGTTCTTAGACACCCTATATTTTAGTGGTTTTTGCCAAGATAGCAAGGATTTCGGGCAAGTGAGCACGGTCCACGCCAATTGTTGCCGGAGTATTGTCGCCAAGGTTAAGGACTTGAAGGCCGTCCTCGGGGATTGGAAGCGGTTCAAGAAGTTCATGTCCCACAAAAGGAGTTCTGGAACAAGTACGAGGAGTTTCCAATGGACTGGGCATTTTGGATGTTTGAATTCATGGGCTGTTCCTAATAACTCTGGTAGCAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

154

Amino Acids

17.38

Weight (kDa)

9.54

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	6 - 104	6.2e-25	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	3 cut(s)	8, 21, 57
AcsI	RAATTY	1 cut(s)	421
AfaI	GTAC	2 cut(s)	101, 382
AfiI	CCNNNNNNNGG	2 cut(s)	324, 363
AgsI	TTSAA	4 cut(s)	151, 313, 343, 421
Alw21I	GWGCWC	1 cut(s)	263
AlwI	GGATC	3 cut(s)	8, 21, 57
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	411
BsaJI	CCNNGG	6 cut(s)	17, 108, 120, 160, 297, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 363
Bse1I	ACTGG	2 cut(s)	49, 406
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	6 cut(s)	17, 108, 120, 160, 297, 322
BseGI	GGATG	2 cut(s)	145, 419
BseLI	CCNNNNNNNGG	2 cut(s)	324, 363
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	49, 406
BseRI	GAGGAG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	3 cut(s)	138, 198, 340
BslI	CCNNNNNNNGG	2 cut(s)	324, 363
BsmFI	GGGAC	3 cut(s)	138, 198, 340
BsnI	GGCC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	13, 62
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	8, 21, 57
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	49, 406
BssECI	CCNNGG	6 cut(s)	17, 108, 120, 160, 297, 322
BssMI	GATC	2 cut(s)	13, 62
BssT1I	CCWWGG	3 cut(s)	17, 108, 297
Bst4CI	ACNGT	2 cut(s)	87, 265
BstDEI	CTNAG	2 cut(s)	188, 202
BstDSI	CCRYGG	2 cut(s)	17, 120
BstF5I	GGATG	2 cut(s)	145, 419
BstKTI	GATC	2 cut(s)	16, 65
BstMBI	GATC	2 cut(s)	13, 62
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	13, 62
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	2 cut(s)	13, 62
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	2 cut(s)	17, 120
BtsCI	GGATG	2 cut(s)	145, 419
BtsIMutI	CAGTG	2 cut(s)	42, 83
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	100, 381
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	3 cut(s)	18, 352, 426
CviJI	RGCY	3 cut(s)	48, 317, 431
CviKI_1	RGCY	3 cut(s)	48, 317, 431
CviQI	GTAC	2 cut(s)	100, 381
DdeI	CTNAG	2 cut(s)	188, 202
DpnI	GATC	2 cut(s)	15, 64
DpnII	GATC	2 cut(s)	13, 62
Eco130I	CCWWGG	3 cut(s)	17, 108, 297
Eco47I	GGWCC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	421
EcoT14I	CCWWGG	3 cut(s)	17, 108, 297
ErhI	CCWWGG	3 cut(s)	17, 108, 297
FaeI	CATG	3 cut(s)	21, 355, 429
FaiI	YATR	5 cut(s)	19, 214, 353, 427, 460
FaqI	GGGAC	3 cut(s)	138, 198, 340
FatI	CATG	3 cut(s)	17, 351, 425
FokI	GGATG	2 cut(s)	152, 426
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	3 cut(s)	21, 355, 429
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	3 cut(s)	102, 175, 268
Hpy188I	TCNGA	2 cut(s)	62, 161
Hpy188III	TCNNGA	2 cut(s)	343, 372
Hpy8I	GTNNAC	3 cut(s)	102, 175, 268
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	87, 265
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	188, 202
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	21, 355, 429
Kzo9I	GATC	2 cut(s)	13, 62
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	30, 122, 296, 357, 387, 432
MaeII	ACGT	1 cut(s)	24
MalI	GATC	2 cut(s)	15, 64
MboI	GATC	2 cut(s)	13, 62
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	2 cut(s)	13, 62
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	2 cut(s)	274, 421
MnlI	CCTC	4 cut(s)	115, 155, 332, 378
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	35, 303
MspI	CCGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	13, 62
NlaIII	CATG	3 cut(s)	21, 355, 429
NlaIV	GGNNCC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	13, 62
RsaI	GTAC	2 cut(s)	101, 382
RsaNI	GTAC	2 cut(s)	100, 381
SaqAI	TTAA	2 cut(s)	35, 303
Sau3AI	GATC	2 cut(s)	13, 62
Sau96I	GGNCC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	5 cut(s)	27, 107, 156, 200, 303
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	274, 421
SsiI	CCGC	1 cut(s)	337
StyI	CCWWGG	3 cut(s)	17, 108, 297
TaaI	ACNGT	2 cut(s)	87, 265
TaiI	ACGT	1 cut(s)	27
TasI	AATT	2 cut(s)	274, 421
Tru1I	TTAA	2 cut(s)	35, 303
Tru9I	TTAA	2 cut(s)	35, 303
TscAI	CASTG	2 cut(s)	49, 90
TspDTI	ATGAA	2 cut(s)	340, 414
TspRI	CASTG	2 cut(s)	49, 90
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.