FvH4_7g26450

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002782
Physical Location & Seq
Reverse (-)
19973404 .. 19975577
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26450.t1

Sequence Viewer

Length: 1146 bp
ATGGATGGAGAGAGGCCTCTTGAATCTTCAATATATGGCCGAAGAACTTGCATACATGAGAAGCTCGCTAGCTCCCATCACAGCTTGAATAGCTTTCTGATTAATTGCAAGAAAGGCATGGAAAGCAAACAGTTTGCGATATTCTTCCTTCTGATCTTTGCTGGTTTAGTATTGTTCATGTTCAATCAAATCTCAAACGGATCCAGCCCTTTCTTTCTTGCCCGCCAAATATGTCACACCTCTAAACAGGTCAATAACACGAGCAGGGCAGATGCGCTTGAATCAGCTTTGTCTGAAGCTTCCATGGAAAACAAGACTGTGATAATTGCGATTATAAACAAAGCTTATGTAGAAGGAGATAAGTCCATGCTTGACTTATTTTTAGATGGTTTTTGGCTTGGAGAAGACACAAGGCACTTGATTAATCACCTACTTCTTGTGGCGGCCGATCAAACATCCTTTGAACGCTGCAAGTTTCTCCGTCTTCACTGCTACAAGCTCGAGACCGCCGGAGTCGATTTTGATGCTGAGGAAGTGTACATGTCTCAAGATTTTATCAAGATGATGTGGAGGAGAACTCTCTTTCTCGGAGAGACGCTCAAGAAAGGCTATAGTTTCATATTCACGGATGCAGATGTAATGTGGCTAAGGAATCCATTTCCAAGGCTAAACTACAACCAAAGCATAGATAGCCTAGACCTCCAGATCAGTACTGATAAGTTTAATGGCGATCAGTGGTCTAAAGACAACCCCATCAACTCAGGCTTCTACATGATCCGTTCCAACAATAGAACAATCTCATTATTCGACAAATGGTACGCCAGAAAAAACGAATCTGCAGGATTGAAAGAGCAGGATGTTCTAAACAACATGATCCGAGAAGGGGTTTTCAAAGAATTAGGTCTCAGAGTTAGGTTCTTGGACACCCTCTATTTCAGTGGCTTCTGTGAAGTCAGCAGAGACTTCAAAGCTGTCACAACCGTTCATGCTAACTGCTGCCGCACGATAAGCGCCAAAGTGGTGGATCTCACGGCGGTAGTTCACGACTGGAAGAGGTTCAAGAGCTTAACTAACTCAAATCAGACCTCGACCTTACAATGGACTAACCATGTCGCGTGTCATAACTCCTGGAAACGACACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

382

Amino Acids

44.05

Weight (kDa)

8.63

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 139 - 342 1.9e-63 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AccII CGCG 1 cut(s) 1115
AciI CCGC 5 cut(s) 223, 443, 507, 1000, 1034
AclWI GGATC 5 cut(s) 195, 208, 769, 868, 1032
AcoI YGGCCR 2 cut(s) 37, 444
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 539, 712, 818
AfiI CCNNNNNNNGG 2 cut(s) 883, 1098
AflIII ACRYGT 1 cut(s) 540
AjnI CCWGG 1 cut(s) 1127
Alw26I GTCTC 5 cut(s) 497, 549, 587, 908, 954
AlwI GGATC 5 cut(s) 195, 208, 769, 868, 1032
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 3 cut(s) 14, 37, 444
ApeKI GCWGC 2 cut(s) 468, 996
AseI ATTAAT 2 cut(s) 102, 423
Asp700I GAANNNNTTC 1 cut(s) 1055
AspLEI GCGC 2 cut(s) 277, 1013
AsuHPI GGTGA 1 cut(s) 419
AsuNHI GCTAGC 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 500
BamHI GGATCC 1 cut(s) 200
BauI CACGAG 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 411, 476
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 455, 983
BccI CCATC 3 cut(s) 84, 380, 761
BceAI ACGGC 1 cut(s) 1047
BcgI CGANNNNNNTGC 4 cut(s) 30, 64, 506, 540
BciT130I CCWGG 1 cut(s) 1129
BcoDI GTCTC 5 cut(s) 497, 549, 587, 908, 954
BfaI CTAG 2 cut(s) 69, 695
BfmI CTRYAG 2 cut(s) 610, 837
BfoI RGCGCY 1 cut(s) 1014
BisI GCNGC 4 cut(s) 444, 469, 997, 1000
BlsI GCNGC 4 cut(s) 445, 470, 998, 1001
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 1 cut(s) 1129
BmeT110I CYCGRG 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 1129
BmsI GCATC 3 cut(s) 262, 514, 619
BmtI GCTAGC 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 411, 476
BplI GAGNNNNNCTC 4 cut(s) 562, 594, 582, 614
BpmI CTGGAG 1 cut(s) 686
Bpu10I CCTNAGC 2 cut(s) 528, 647
BpuEI CTTGAG 2 cut(s) 531, 584
BsaI GGTCTC 2 cut(s) 497, 908
BsaJI CCNNGG 2 cut(s) 303, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 883, 1098
Bse1I ACTGG 1 cut(s) 1052
BseBI CCWGG 1 cut(s) 1129
BseDI CCNNGG 2 cut(s) 303, 662
BseGI GGATG 4 cut(s) 10, 455, 634, 862
BseLI CCNNNNNNNGG 2 cut(s) 883, 1098
BseMII CTCAG 3 cut(s) 519, 774, 919
BseNI ACTGG 1 cut(s) 1052
BseRI GAGGAG 1 cut(s) 586
BseX3I CGGCCG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 455, 983
Bsh1236I CGCG 1 cut(s) 1115
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 3 cut(s) 16, 39, 446
BsiEI CGRYCG 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 1 cut(s) 510
BslI CCNNNNNNNGG 2 cut(s) 883, 1098
BsmAI GTCTC 5 cut(s) 497, 549, 587, 908, 954
BsmBI CGTCTC 1 cut(s) 587
BsnI GGCC 3 cut(s) 16, 39, 446
Bso31I GGTCTC 2 cut(s) 497, 908
BsoBI CYCGRG 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 5 cut(s) 223, 443, 507, 1000, 1034
BspANI GGCC 3 cut(s) 16, 39, 446
BspCNI CTCAG 3 cut(s) 520, 773, 918
BspFNI CGCG 1 cut(s) 1115
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 841
BspOI GCTAGC 1 cut(s) 72
BspPI GGATC 5 cut(s) 195, 208, 769, 868, 1032
BspTNI GGTCTC 2 cut(s) 497, 908
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 1 cut(s) 1052
BssECI CCNNGG 2 cut(s) 303, 662
BssMI GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
BssSI CACGAG 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 303, 662
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 1129
Bst4CI ACNGT 4 cut(s) 132, 319, 982, 1142
Bst6I CTCTTC 1 cut(s) 1046
BstAUI TGTACA 1 cut(s) 537
BstC8I GCNNGC 3 cut(s) 66, 70, 223
BstDEI CTNAG 4 cut(s) 528, 647, 760, 905
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 4 cut(s) 10, 455, 634, 862
BstFNI CGCG 1 cut(s) 1115
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 2 cut(s) 277, 1013
BstKTI GATC 8 cut(s) 156, 203, 451, 708, 733, 777, 876, 1027
BstMAI GTCTC 5 cut(s) 497, 549, 587, 908, 954
BstMBI GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 5 cut(s) 90, 114, 123, 690, 1008
BstNI CCWGG 1 cut(s) 1129
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 1127
BstSFI CTRYAG 2 cut(s) 610, 837
BstUI CGCG 1 cut(s) 1115
BstV1I GCAGC 2 cut(s) 455, 983
BstV2I GAAGAC 2 cut(s) 411, 476
BstX2I RGATCY 2 cut(s) 200, 1024
BstXI CCANNNNNNTGG 1 cut(s) 1021
BstYI RGATCY 2 cut(s) 200, 1024
BstZI CGGCCG 1 cut(s) 444
BsuRI GGCC 3 cut(s) 16, 39, 446
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 4 cut(s) 10, 455, 634, 862
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 487, 740, 943
Cac8I GCNNGC 3 cut(s) 66, 70, 223
CfoI GCGC 2 cut(s) 277, 1013
CseI GACGC 1 cut(s) 604
Csp6I GTAC 3 cut(s) 538, 711, 817
CviQI GTAC 3 cut(s) 538, 711, 817
DdeI CTNAG 4 cut(s) 528, 647, 760, 905
DpnI GATC 8 cut(s) 155, 202, 450, 707, 732, 776, 875, 1026
DpnII GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
EaeI YGGCCR 2 cut(s) 37, 444
EagI CGGCCG 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 1046
EarI CTCTTC 1 cut(s) 1046
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 303, 662
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 2 cut(s) 497, 908
Eco52I CGGCCG 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 1127
EcoT14I CCWWGG 2 cut(s) 303, 662
ErhI CCWWGG 2 cut(s) 303, 662
Esp3I CGTCTC 1 cut(s) 587
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 4 cut(s) 444, 469, 997, 1000
FokI GGATG 4 cut(s) 17, 442, 641, 869
Fsp4HI GCNGC 4 cut(s) 444, 469, 997, 1000
FspBI CTAG 2 cut(s) 69, 695
GlaI GCGC 2 cut(s) 276, 1012
GluI GCNGC 4 cut(s) 444, 469, 997, 1000
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 3 cut(s) 16, 39, 446
HapII CCGG 1 cut(s) 510
HgaI GACGC 1 cut(s) 604
HhaI GCGC 2 cut(s) 277, 1013
Hin6I GCGC 2 cut(s) 275, 1011
HinP1I GCGC 2 cut(s) 275, 1011
HindIII AAGCTT 2 cut(s) 297, 342
HinfI GANTC 5 cut(s) 23, 281, 513, 652, 833
HpaII CCGG 1 cut(s) 510
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 538, 1042
Hpy188I TCNGA 7 cut(s) 99, 153, 295, 590, 878, 908, 1083
Hpy188III TCNNGA 8 cut(s) 20, 502, 548, 559, 601, 703, 1043, 1060
Hpy8I GTNNAC 2 cut(s) 538, 1042
HpyAV CCTTC 3 cut(s) 158, 347, 875
HpyCH4III ACNGT 4 cut(s) 132, 319, 982, 1142
HpyCH4V TGCA 5 cut(s) 51, 108, 471, 632, 839
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 114, 123, 690, 1008
HpyF3I CTNAG 4 cut(s) 528, 647, 760, 905
HspAI GCGC 2 cut(s) 275, 1011
Kzo9I GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 2 cut(s) 455, 983
LweI GCATC 3 cut(s) 262, 514, 619
MaeI CTAG 2 cut(s) 69, 695
MaeIII GTNAC 2 cut(s) 233, 973
MalI GATC 8 cut(s) 155, 202, 450, 707, 732, 776, 875, 1026
MboI GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
MboII GAAGA 6 cut(s) 18, 54, 136, 416, 476, 1063
MflI RGATCY 2 cut(s) 200, 1024
MluCI AATT 3 cut(s) 103, 324, 896
MlyI GAGTC 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 807
MnlI CCTC 9 cut(s) 6, 27, 250, 523, 564, 710, 938, 1047, 1096
MroXI GAANNNNTTC 1 cut(s) 1055
MseI TTAA 5 cut(s) 102, 423, 723, 1067, 1144
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 1129
MvaI CCWGG 1 cut(s) 1129
MvnI CGCG 1 cut(s) 1115
MwoI GCNNNNNNNGC 5 cut(s) 90, 114, 123, 690, 1008
NcoI CCATGG 1 cut(s) 303
NdeII GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
NheI GCTAGC 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 233, 973
NspI RCATGY 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 500
PceI AGGCCT 1 cut(s) 16
PciI ACATGT 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 4 cut(s) 23, 281, 652, 833
PfoI TCCNGGA 1 cut(s) 1127
PkrI GCNGC 4 cut(s) 445, 470, 998, 1001
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PscI ACATGT 1 cut(s) 540
PshBI ATTAAT 2 cut(s) 102, 423
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 1127
PspN4I GGNNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 841
PsuI RGATCY 2 cut(s) 200, 1024
RsaI GTAC 3 cut(s) 539, 712, 818
RsaNI GTAC 3 cut(s) 538, 711, 817
SaqAI TTAA 5 cut(s) 102, 423, 723, 1067, 1144
SatI GCNGC 4 cut(s) 444, 469, 997, 1000
Sau3AI GATC 8 cut(s) 153, 200, 448, 705, 730, 774, 873, 1024
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 1129
SfaNI GCATC 3 cut(s) 262, 514, 619
SfcI CTRYAG 2 cut(s) 610, 837
Sfr274I CTCGAG 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 500
SmlI CTYRAG 3 cut(s) 500, 546, 599
SmoI CTYRAG 3 cut(s) 500, 546, 599
Sse9I AATT 3 cut(s) 103, 324, 896
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 5 cut(s) 223, 443, 507, 1000, 1034
SspMI CTAG 2 cut(s) 69, 695
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 1127
StyI CCWWGG 2 cut(s) 303, 662
TaaI ACNGT 4 cut(s) 132, 319, 982, 1142
TaqI TCGA 4 cut(s) 501, 516, 807, 1088
TasI AATT 3 cut(s) 103, 324, 896
TatI WGTACW 2 cut(s) 537, 710
TauI GCSGC 2 cut(s) 446, 1002
TfiI GAWTC 4 cut(s) 23, 281, 652, 833
Tru1I TTAA 5 cut(s) 102, 423, 723, 1067, 1144
Tru9I TTAA 5 cut(s) 102, 423, 723, 1067, 1144
TscAI CASTG 3 cut(s) 494, 740, 943
TseFI GTSAC 2 cut(s) 233, 973
TseI GCWGC 2 cut(s) 468, 996
Tsp45I GTSAC 2 cut(s) 233, 973
TspDTI ATGAA 3 cut(s) 166, 607, 974
TspGWI ACGGA 4 cut(s) 213, 470, 641, 767
TspRI CASTG 3 cut(s) 494, 740, 943
VspI ATTAAT 2 cut(s) 102, 423
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 1055
XspI CTAG 2 cut(s) 69, 695
ZrmI AGTACT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.