Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Forward (+)

17795220 .. 17802381

Gene Structure 7162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATAATCAACCAAAACACTCCTCTGTTGGATACAATCTTGCCTTTCTCTCCTTACTCTTGGCCAGTGTTGTTTTTCTTTGTATATGGTCTTCTTCATCCTCCGTCATAAACCCTCTCTTTAGCTTTCAGAAACATGACGCCCAATGCCCGTCAAAGAACCTAAGCACCACGACCACCACTACATTTAATGTGGCTCCAGATGAGCTTCTGGCCACCCTAGACAAGACCTCGATTGGCAACAAGACTGTGATCATTGCTGTTGTAAACAAGGCCTACGCAGTCCAAGAGGTTAAGGCAGACACCACCATGCTTGACCTTTTCATCGAGAGCTTTTGGCAAGGGGAGGACACTAGGCATCTGCTTGATCATCTTGTGCTCGTGGCTGTTGATCAGACGGCCTACGATCGCTGCCAGTTTCTGAGGCTCAACTGCTACAAGCTGGAAACGGACGGTGTTGATTTTGGGGGAGAGAAGCTTTACATGTCCCAAGATTTCATCAAAATGATGTGGAGAAGAACTTGGTTTCTGTTGGAGGTTCTAAAGCGCGGTTACAACTTCATATTCACGGACACTGATGTTTTGTGGCTAAGGAACCCGTTCTCAAGACTAAGTAAGAGCGAAACTGAGGATTTACAGATAAGCACAGATAGGTTCTTTGGAGATCCATGGAACATAAAACATCCAATCAACACTGGCTTCTACCACATCAGATCGAACAACAAGACCATTGCACTGTTTGATAGATGGTACACCATGAAGGACAATGCCACGGGACAGAAAGAGCAGGATGTCCTATTAGACCTAATCCGAGGGGGCATCATTGGGCAGCTGGGACTTAAGGTTAGGTTCTTGGACACCCTATATTTCAGTGGCTTTTGCCAAGATAGCAAGGACTTTGGGGCAGTGACCACTGTCCATGCCAACTGTTGTCGGAGCATCGGGGCCAAGGTTAAGGACTTGAAGGCTGTCCTCCAGGACTGGAAGCAGTTCAAGAAGACCACGACCCAGAAAACAACTGCAGGTCTAGCAGCAAATGGTTTCCGATGGTCAGGCCACTGGGGGTGCAGGAATTCATGGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

363

Amino Acids

41.33

Weight (kDa)

8.66

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1013
AccII	CGCG	1 cut(s)	549
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	2 cut(s)	63, 213
AcsI	RAATTY	1 cut(s)	1072
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	752
AflII	CTTAAG	1 cut(s)	839
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	964, 994
AjnI	CCWGG	1 cut(s)	975
AluBI	AGCT	6 cut(s)	126, 208, 333, 442, 478, 832
AluI	AGCT	6 cut(s)	126, 208, 333, 442, 478, 832
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	659
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	6 cut(s)	63, 213, 273, 399, 945, 1054
ApeKI	GCWGC	3 cut(s)	411, 829, 1031
ApoI	RAATTY	1 cut(s)	1072
Asp700I	GAANNNNTTC	2 cut(s)	599, 989
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	945
BalI	TGGCCA	2 cut(s)	65, 215
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	2 cut(s)	84, 1004
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	398, 841, 1043
BccI	CCATC	2 cut(s)	741, 1041
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	977
BciVI	GTATCC	1 cut(s)	26
BclI	TGATCA	3 cut(s)	252, 367, 391
BfaI	CTAG	3 cut(s)	221, 354, 1028
BfmI	CTRYAG	1 cut(s)	1020
BfrI	CTTAAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	1013
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	412, 830, 1032
BlsI	GCNGC	3 cut(s)	413, 831, 1033
Bme1390I	CCNGG	1 cut(s)	977
BmgT120I	GGNCC	1 cut(s)	945
BmiI	GGNNCC	3 cut(s)	198, 596, 946
BmrFI	CCNGG	1 cut(s)	977
BmrI	ACTGGG	1 cut(s)	1069
BmsI	GCATC	3 cut(s)	367, 828, 948
BmuI	ACTGGG	1 cut(s)	1069
BoxI	GACNNNNGTC	1 cut(s)	914
BpiI	GAAGAC	2 cut(s)	84, 1004
BpmI	CTGGAG	2 cut(s)	183, 959
Bpu10I	CCTNAGC	2 cut(s)	164, 590
BpuEI	CTTGAG	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	668, 771, 811, 948
Bse1I	ACTGG	5 cut(s)	66, 415, 700, 986, 1064
Bse3DI	GCAATG	2 cut(s)	255, 729
BseBI	CCWGG	1 cut(s)	977
BseDI	CCNNGG	4 cut(s)	668, 771, 811, 948
BseGI	GGATG	3 cut(s)	98, 682, 796
BseMI	GCAATG	2 cut(s)	255, 729
BseMII	CTCAG	2 cut(s)	413, 618
BseNI	ACTGG	5 cut(s)	66, 415, 700, 986, 1064
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	398, 841, 1043
BseYI	CCCAGC	1 cut(s)	832
BsgI	GTGCAG	1 cut(s)	1087
Bsh1236I	CGCG	1 cut(s)	549
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	6 cut(s)	65, 215, 275, 401, 947, 1056
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	381
BslFI	GGGAC	3 cut(s)	472, 789, 849
BsmFI	GGGAC	3 cut(s)	472, 789, 849
BsnI	GGCC	6 cut(s)	65, 215, 275, 401, 947, 1056
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
Bsp19I	CCATGG	1 cut(s)	668
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	6 cut(s)	65, 215, 275, 401, 947, 1056
BspCNI	CTCAG	2 cut(s)	414, 619
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	3 cut(s)	198, 596, 946
BspMAI	CTGCAG	1 cut(s)	1024
BspMI	ACCTGC	1 cut(s)	1013
BspPI	GGATC	1 cut(s)	659
BspTI	CTTAAG	1 cut(s)	839
BsrDI	GCAATG	2 cut(s)	255, 729
BsrI	ACTGG	5 cut(s)	66, 415, 700, 986, 1064
BssECI	CCNNGG	4 cut(s)	668, 771, 811, 948
BssMI	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	668, 948
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	977
Bst4CI	ACNGT	5 cut(s)	250, 455, 738, 916, 929
BstACI	GRCGYC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	839
BstDEI	CTNAG	5 cut(s)	164, 422, 590, 611, 627
BstDSI	CCRYGG	2 cut(s)	668, 771
BstF5I	GGATG	3 cut(s)	98, 682, 796
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	6 cut(s)	255, 370, 394, 409, 667, 716
BstMBI	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	888, 1028
BstNI	CCWGG	1 cut(s)	977
BstNSI	RCATGY	1 cut(s)	487
BstPAI	GACNNNNGTC	1 cut(s)	914
BstSCI	CCNGG	1 cut(s)	975
BstSFI	CTRYAG	1 cut(s)	1020
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	398, 841, 1043
BstV2I	GAAGAC	2 cut(s)	84, 1004
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	6 cut(s)	65, 215, 275, 401, 947, 1056
BtgI	CCRYGG	2 cut(s)	668, 771
BtsCI	GGATG	3 cut(s)	98, 682, 796
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	8 cut(s)	73, 573, 693, 734, 877, 912, 912, 1057
BveI	ACCTGC	1 cut(s)	1013
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	945
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	751
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	7 cut(s)	137, 310, 484, 669, 757, 920, 1077
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	5 cut(s)	164, 422, 590, 611, 627
DpnI	GATC	6 cut(s)	254, 369, 393, 408, 666, 715
DpnII	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
EaeI	YGGCCR	2 cut(s)	63, 213
Eco130I	CCWWGG	2 cut(s)	668, 948
Eco147I	AGGCCT	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	1072
EcoRII	CCWGG	1 cut(s)	975
EcoT14I	CCWWGG	2 cut(s)	668, 948
ErhI	CCWWGG	2 cut(s)	668, 948
FaeI	CATG	7 cut(s)	140, 313, 487, 672, 760, 923, 1080
FaqI	GGGAC	3 cut(s)	472, 789, 849
FatI	CATG	7 cut(s)	136, 309, 483, 668, 756, 919, 1076
FbaI	TGATCA	3 cut(s)	252, 367, 391
Fnu4HI	GCNGC	3 cut(s)	412, 830, 1032
FokI	GGATG	3 cut(s)	85, 669, 803
Fsp4HI	GCNGC	3 cut(s)	412, 830, 1032
FspBI	CTAG	3 cut(s)	221, 354, 1028
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	3 cut(s)	412, 830, 1032
GsaI	CCCAGC	1 cut(s)	836
GsuI	CTGGAG	2 cut(s)	183, 959
HaeIII	GGCC	6 cut(s)	65, 215, 275, 401, 947, 1056
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	549
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	7 cut(s)	140, 313, 487, 672, 760, 923, 1080
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	268, 753
Hpy188I	TCNGA	7 cut(s)	132, 396, 423, 713, 812, 936, 1046
Hpy188III	TCNNGA	4 cut(s)	200, 328, 606, 994
Hpy8I	GTNNAC	2 cut(s)	268, 753
HpyAV	CCTTC	2 cut(s)	754, 958
HpyCH4III	ACNGT	5 cut(s)	250, 455, 738, 916, 929
HpyCH4V	TGCA	3 cut(s)	734, 1022, 1068
HpyF10VI	GCNNNNNNNGC	2 cut(s)	888, 1028
HpyF3I	CTNAG	5 cut(s)	164, 422, 590, 611, 627
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	140, 313, 487, 672, 760, 923, 1080
HspAI	GCGC	1 cut(s)	547
Ksp22I	TGATCA	3 cut(s)	252, 367, 391
Kzo9I	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
LmnI	GCTCC	2 cut(s)	202, 936
Lsp1109I	GCAGC	3 cut(s)	398, 841, 1043
LweI	GCATC	3 cut(s)	367, 828, 948
MaeI	CTAG	3 cut(s)	221, 354, 1028
MaeIII	GTNAC	2 cut(s)	551, 907
MalI	GATC	6 cut(s)	254, 369, 393, 408, 666, 715
MboI	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
MboII	GAAGA	4 cut(s)	84, 87, 528, 1009
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	2 cut(s)	65, 215
MluCI	AATT	1 cut(s)	1072
MluNI	TGGCCA	2 cut(s)	65, 215
MmeI	TCCRAC	3 cut(s)	10, 513, 914
Mox20I	TGGCCA	2 cut(s)	65, 215
MroXI	GAANNNNTTC	2 cut(s)	599, 989
MscI	TGGCCA	2 cut(s)	65, 215
MseI	TTAA	4 cut(s)	189, 294, 840, 954
MslI	CAYNNNNRTG	2 cut(s)	308, 503
Msp20I	TGGCCA	2 cut(s)	65, 215
MspA1I	CMGCKG	1 cut(s)	832
MspCI	CTTAAG	1 cut(s)	839
MspR9I	CCNGG	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	977
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	888, 1028
NcoI	CCATGG	1 cut(s)	668
NdeII	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
NlaIII	CATG	7 cut(s)	140, 313, 487, 672, 760, 923, 1080
NlaIV	GGNNCC	3 cut(s)	198, 596, 946
NmuCI	GTSAC	1 cut(s)	907
NspI	RCATGY	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	275
PciI	ACATGT	1 cut(s)	483
PdmI	GAANNNNTTC	2 cut(s)	599, 989
PfoI	TCCNGGA	1 cut(s)	975
PkrI	GCNGC	3 cut(s)	413, 831, 1033
Ple19I	CGATCG	1 cut(s)	409
PscI	ACATGT	1 cut(s)	483
PshAI	GACNNNNGTC	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	975
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	975
PspN4I	GGNNCC	3 cut(s)	198, 596, 946
PspPI	GGNCC	1 cut(s)	945
PstI	CTGCAG	1 cut(s)	1024
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	664
PvuI	CGATCG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	2 cut(s)	308, 503
SaqAI	TTAA	4 cut(s)	189, 294, 840, 954
SatI	GCNGC	3 cut(s)	412, 830, 1032
Sau3AI	GATC	6 cut(s)	252, 367, 391, 406, 664, 713
Sau96I	GGNCC	1 cut(s)	945
ScrFI	CCNGG	1 cut(s)	977
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	367, 828, 948
SfcI	CTRYAG	1 cut(s)	1020
SmiMI	CAYNNNNRTG	2 cut(s)	308, 503
SmlI	CTYRAG	2 cut(s)	604, 839
SmoI	CTYRAG	2 cut(s)	604, 839
Sse9I	AATT	1 cut(s)	1072
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	3 cut(s)	221, 354, 1028
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	975
StyI	CCWWGG	2 cut(s)	668, 948
TaaI	ACNGT	5 cut(s)	250, 455, 738, 916, 929
TaqI	TCGA	3 cut(s)	233, 327, 716
TasI	AATT	1 cut(s)	1072
Tru1I	TTAA	4 cut(s)	189, 294, 840, 954
Tru9I	TTAA	4 cut(s)	189, 294, 840, 954
TscAI	CASTG	8 cut(s)	73, 580, 700, 741, 877, 912, 919, 1064
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	3 cut(s)	411, 829, 1031
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	6 cut(s)	87, 313, 487, 550, 773, 1065
TspGWI	ACGGA	3 cut(s)	94, 464, 584
TspRI	CASTG	8 cut(s)	73, 580, 700, 741, 877, 912, 919, 1064
Vha464I	CTTAAG	1 cut(s)	839
XapI	RAATTY	1 cut(s)	1072
XceI	RCATGY	1 cut(s)	487
XmnI	GAANNNNTTC	2 cut(s)	599, 989
XspI	CTAG	3 cut(s)	221, 354, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.