RchiOBHm_Chr1g0373041

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002782
Physical Location & Seq
Reverse (-)
61486174 .. 61488770
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59697

Sequence Viewer

Length: 1029 bp
ATGGAAAGTAAACAGTTTGCAAAATTCTTCCTTCTGATATTTGCTGGTTTAGTATTGTTCGTGTTCAATCAAAGCTCGAACGGATCCAATCCATTCTTTCTTGCCCGCCAAATATGTCAAACCTCTAAACAGGTCAATGACACGAGCAGGAGCGATGCTCTTGAATCAGCTTTGTCTGAGGCTTCCATGGAAAACAAGACTGTGATCATTGCGATTATAAACAAAGCCTATGTAGAAGGCGATAAGTCCATGCTTGACTTGTTTTTAGACGGTTTTTGGCTTGGAGAAGACACAAGGAACTTGATTAATCACCTACTTCTTGTGGCGGCCGATCAAACATCCTTTGAACGCTGCAAGTTTCTCCATCTTCACTGCTACAAGCTTGAGACGGCCGGAGTCGATTTTGATGCTGAGGAAGTGTACATGTCTCAAGATTTTATCAAGATGATGTGGAGGAGAACTCTCTTTCTCGGAGAAACGCTCAAGAAAGGCTATAGTTTCATATTCACGGATGCGGATGTAATGTGGCTACGGAATCCACTTCCAAGGCTCAAGTACAACCAAAGCATAGATAGCTTAGATCTCCAGATCAGTACTGATCAATTCAATGGCGATCAGTGGTCTGAAGCCAACCCCATCAACTCAGGCTTCTACATTGTGCGGTCCAACAACAGAACAATCTCATTATTCGACAAGTGGTACGCCAGGAAAAACGACTCCGCCGGATTGAAAGAGCAGGATGTTCTAAACAACATGATCCGGGAAGGTGTTTTCAAGGAGTTAGGCCTCAGAGTGAGGTTTTTGGACACCCTTTATTTCAGTGGCTTTTGTGAAGTCAGCAGGGACTTCAAAGCTGTCACAACCGTTCATGCTAACTGTTGCCGCACAATAAGCGCCAAGGTGGTGGATCTGACGGCTGTGATTCACGACTGGAAGAGGTTCAAGAGCTTAACTAACTCAAATCAGACGTCGATTTTGCAATGGACTAACCATGTAGCCTGCCAAAACTCCTGGAGACGTCACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

342

Amino Acids

39.54

Weight (kDa)

7.6

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 101 - 303 6.7e-64 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AatII GACGTC 2 cut(s) 971, 1021
AciI CCGC 6 cut(s) 106, 326, 515, 661, 720, 883
AclWI GGATC 4 cut(s) 78, 91, 751, 915
AcoI YGGCCR 2 cut(s) 327, 390
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 2 cut(s) 968, 1018
AfaI GTAC 4 cut(s) 422, 557, 595, 701
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 8 cut(s) 67, 164, 347, 607, 730, 775, 850, 943
AjnI CCWGG 2 cut(s) 704, 1010
AluBI AGCT 6 cut(s) 75, 170, 382, 576, 854, 948
AluI AGCT 6 cut(s) 75, 170, 382, 576, 854, 948
Alw26I GTCTC 3 cut(s) 380, 432, 1009
AlwI GGATC 4 cut(s) 78, 91, 751, 915
AoxI GGCC 3 cut(s) 327, 390, 784
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 4 cut(s) 953, 958, 985, 990
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 1 cut(s) 896
AspS9I GGNCC 1 cut(s) 663
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 302, 1013
AvaII GGWCC 1 cut(s) 663
BamHI GGATCC 1 cut(s) 83
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 338
BccI CCATC 2 cut(s) 372, 644
BceAI ACGGC 2 cut(s) 405, 930
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 706, 1012
BclI TGATCA 2 cut(s) 204, 598
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 3 cut(s) 380, 432, 1009
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 897
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 327, 352, 883
BlsI GCNGC 3 cut(s) 328, 353, 884
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 3 cut(s) 706, 761, 1012
Bme18I GGWCC 1 cut(s) 663
BmgT120I GGNCC 1 cut(s) 663
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 706, 761, 1012
BmsI GCATC 3 cut(s) 145, 397, 502
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 6 cut(s) 142, 174, 445, 477, 465, 497
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 4 cut(s) 404, 414, 467, 536
BpuMI CCSGG 1 cut(s) 761
BsaHI GRCGYC 2 cut(s) 968, 1018
BsaJI CCNNGG 3 cut(s) 186, 545, 897
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 2 cut(s) 207, 986
BseBI CCWGG 2 cut(s) 706, 1012
BseDI CCNNGG 3 cut(s) 186, 545, 897
BseGI GGATG 4 cut(s) 338, 517, 523, 745
BseMI GCAATG 2 cut(s) 207, 986
BseMII CTCAG 4 cut(s) 168, 402, 657, 802
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 1 cut(s) 469
BseX3I CGGCCG 2 cut(s) 327, 390
BseXI GCAGC 1 cut(s) 338
Bsh1285I CGRYCG 2 cut(s) 330, 393
BshFI GGCC 3 cut(s) 329, 392, 786
BsiEI CGRYCG 2 cut(s) 330, 393
BsiSI CCGG 3 cut(s) 393, 723, 760
BslFI GGGAC 1 cut(s) 857
BsmAI GTCTC 3 cut(s) 380, 432, 1009
BsmBI CGTCTC 2 cut(s) 380, 1009
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 3 cut(s) 329, 392, 786
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 6 cut(s) 106, 326, 515, 661, 720, 883
BspANI GGCC 3 cut(s) 329, 392, 786
BspCNI CTCAG 4 cut(s) 169, 403, 656, 801
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 4 cut(s) 78, 91, 751, 915
BsrDI GCAATG 2 cut(s) 207, 986
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 3 cut(s) 186, 545, 897
BssMI GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
BssNI GRCGYC 2 cut(s) 968, 1018
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 3 cut(s) 186, 545, 897
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 706, 1012
Bst4CI ACNGT 6 cut(s) 15, 202, 272, 865, 878, 1025
Bst6I CTCTTC 1 cut(s) 929
BstACI GRCGYC 2 cut(s) 968, 1018
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 106, 1000
BstDEI CTNAG 5 cut(s) 177, 411, 577, 643, 788
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 4 cut(s) 338, 517, 523, 745
BstH2I RGCGCY 1 cut(s) 897
BstHHI GCGC 1 cut(s) 896
BstKTI GATC 9 cut(s) 86, 207, 334, 583, 591, 601, 616, 759, 910
BstMAI GTCTC 3 cut(s) 380, 432, 1009
BstMBI GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
BstMCI CGRYCG 2 cut(s) 330, 393
BstMWI GCNNNNNNNGC 2 cut(s) 573, 891
BstNI CCWGG 2 cut(s) 706, 1012
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 704, 759, 1010
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 3 cut(s) 83, 580, 907
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 3 cut(s) 83, 580, 907
BstZI CGGCCG 2 cut(s) 327, 390
BsuRI GGCC 3 cut(s) 329, 392, 786
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 4 cut(s) 338, 517, 523, 745
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 370, 623, 826
Cac8I GCNNGC 2 cut(s) 106, 1000
CfoI GCGC 1 cut(s) 896
Cfr13I GGNCC 1 cut(s) 663
Csp6I GTAC 4 cut(s) 421, 556, 594, 700
CviAII CATG 6 cut(s) 187, 250, 424, 754, 869, 992
CviQI GTAC 4 cut(s) 421, 556, 594, 700
DdeI CTNAG 5 cut(s) 177, 411, 577, 643, 788
DpnI GATC 9 cut(s) 85, 206, 333, 582, 590, 600, 615, 758, 909
DpnII GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
EaeI YGGCCR 2 cut(s) 327, 390
EagI CGGCCG 2 cut(s) 327, 390
Eam1104I CTCTTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 929
EciI GGCGGA 1 cut(s) 709
EclXI CGGCCG 2 cut(s) 327, 390
Eco130I CCWWGG 3 cut(s) 186, 545, 897
Eco147I AGGCCT 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 663
Eco52I CGGCCG 2 cut(s) 327, 390
Eco57I CTGAAG 1 cut(s) 645
EcoRII CCWGG 2 cut(s) 704, 1010
EcoT14I CCWWGG 3 cut(s) 186, 545, 897
ErhI CCWWGG 3 cut(s) 186, 545, 897
Esp3I CGTCTC 2 cut(s) 380, 1009
FaeI CATG 6 cut(s) 190, 253, 427, 757, 872, 995
FaqI GGGAC 1 cut(s) 857
FatI CATG 6 cut(s) 186, 249, 423, 753, 868, 991
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 2 cut(s) 204, 598
Fnu4HI GCNGC 3 cut(s) 327, 352, 883
FokI GGATG 4 cut(s) 325, 524, 530, 752
Fsp4HI GCNGC 3 cut(s) 327, 352, 883
GlaI GCGC 1 cut(s) 895
GluI GCNGC 3 cut(s) 327, 352, 883
GsuI CTGGAG 1 cut(s) 569
HaeII RGCGCY 1 cut(s) 897
HaeIII GGCC 3 cut(s) 329, 392, 786
HapII CCGG 3 cut(s) 393, 723, 760
HhaI GCGC 1 cut(s) 896
Hin1I GRCGYC 2 cut(s) 968, 1018
Hin1II CATG 6 cut(s) 190, 253, 427, 757, 872, 995
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 5 cut(s) 164, 396, 535, 716, 922
HpaII CCGG 3 cut(s) 393, 723, 760
HphI GGTGA 2 cut(s) 302, 1013
Hpy166II GTNNAC 2 cut(s) 11, 421
Hpy188I TCNGA 7 cut(s) 36, 178, 473, 625, 791, 912, 966
Hpy188III TCNNGA 7 cut(s) 161, 431, 442, 484, 586, 926, 943
Hpy8I GTNNAC 2 cut(s) 11, 421
Hpy99I CGWCG 1 cut(s) 973
HpyAV CCTTC 3 cut(s) 41, 230, 758
HpyCH4III ACNGT 6 cut(s) 15, 202, 272, 865, 878, 1025
HpyCH4IV ACGT 2 cut(s) 968, 1018
HpyCH4V TGCA 3 cut(s) 20, 354, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 573, 891
HpyF3I CTNAG 5 cut(s) 177, 411, 577, 643, 788
HpySE526I ACGT 2 cut(s) 968, 1018
Hsp92I GRCGYC 2 cut(s) 968, 1018
Hsp92II CATG 6 cut(s) 190, 253, 427, 757, 872, 995
HspAI GCGC 1 cut(s) 894
Ksp22I TGATCA 2 cut(s) 204, 598
Kzo9I GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 3 cut(s) 145, 397, 502
MaeII ACGT 2 cut(s) 968, 1018
MaeIII GTNAC 2 cut(s) 856, 1019
MalI GATC 9 cut(s) 85, 206, 333, 582, 590, 600, 615, 758, 909
MboI GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
MboII GAAGA 4 cut(s) 19, 299, 359, 946
MflI RGATCY 3 cut(s) 83, 580, 907
MluCI AATT 2 cut(s) 23, 602
MlyI GAGTC 2 cut(s) 405, 710
MmeI TCCRAC 1 cut(s) 690
MnlI CCTC 7 cut(s) 133, 172, 406, 447, 789, 797, 930
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 3 cut(s) 306, 950, 1027
MspI CCGG 3 cut(s) 393, 723, 760
MspR9I CCNGG 3 cut(s) 706, 761, 1012
MvaI CCWGG 2 cut(s) 706, 1012
MwoI GCNNNNNNNGC 2 cut(s) 573, 891
NciI CCSGG 1 cut(s) 761
NcoI CCATGG 1 cut(s) 186
NdeII GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
NlaIII CATG 6 cut(s) 190, 253, 427, 757, 872, 995
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 856, 1019
NspI RCATGY 1 cut(s) 427
PceI AGGCCT 1 cut(s) 786
PciI ACATGT 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 3 cut(s) 164, 535, 922
PfoI TCCNGGA 2 cut(s) 759, 1010
PkrI GCNGC 3 cut(s) 328, 353, 884
PleI GAGTC 2 cut(s) 404, 710
PpsI GAGTC 2 cut(s) 404, 710
PscI ACATGT 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 704, 1010
PspGI CCWGG 2 cut(s) 704, 1010
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 663
PsuI RGATCY 3 cut(s) 83, 580, 907
RsaI GTAC 4 cut(s) 422, 557, 595, 701
RsaNI GTAC 4 cut(s) 421, 556, 594, 700
SaqAI TTAA 3 cut(s) 306, 950, 1027
SatI GCNGC 3 cut(s) 327, 352, 883
Sau3AI GATC 9 cut(s) 83, 204, 331, 580, 588, 598, 613, 756, 907
Sau96I GGNCC 1 cut(s) 663
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 2 cut(s) 405, 710
ScrFI CCNGG 3 cut(s) 706, 761, 1012
SfaNI GCATC 3 cut(s) 145, 397, 502
SfcI CTRYAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 663
SmlI CTYRAG 4 cut(s) 383, 429, 482, 551
SmoI CTYRAG 4 cut(s) 383, 429, 482, 551
Sse9I AATT 2 cut(s) 23, 602
SseBI AGGCCT 1 cut(s) 786
SsiI CCGC 6 cut(s) 106, 326, 515, 661, 720, 883
StuI AGGCCT 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 704, 759, 1010
StyI CCWWGG 3 cut(s) 186, 545, 897
TaaI ACNGT 6 cut(s) 15, 202, 272, 865, 878, 1025
TaiI ACGT 2 cut(s) 971, 1021
TaqI TCGA 4 cut(s) 77, 399, 690, 971
TasI AATT 2 cut(s) 23, 602
TatI WGTACW 3 cut(s) 420, 555, 593
TauI GCSGC 2 cut(s) 329, 885
TfiI GAWTC 3 cut(s) 164, 535, 922
Tru1I TTAA 3 cut(s) 306, 950, 1027
Tru9I TTAA 3 cut(s) 306, 950, 1027
TscAI CASTG 3 cut(s) 377, 623, 826
TseFI GTSAC 2 cut(s) 856, 1019
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 2 cut(s) 856, 1019
TspDTI ATGAA 2 cut(s) 490, 857
TspGWI ACGGA 3 cut(s) 96, 524, 547
TspRI CASTG 3 cut(s) 377, 623, 826
VpaK11BI GGWCC 1 cut(s) 663
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 938
ZraI GACGTC 2 cut(s) 969, 1019
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.