Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Reverse (-)

27381468 .. 27382915

Gene Structure 1448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGAACTTACAAGACTGTGATAATTGCGATTGTAAATAAAGCGTACGTAGAAGGAGATAAGCCAATGCTTGATTTATTTTTAAATGGGTTCTGGCATGGAGAAGACACACGAGGCTTGATTTTTCAACTTCTTCTCGTGGCGGTCGATCAAACATCTTTCGAACGTTGTAAGTCTCTCCACCTTCACTGCCACAAGCTCGAAGCAGATGATCCTGCCGATTTTGAGGCTGAGAAACTGTACATGTCTCAAGATTTTATCAACATGATGTGGAGGAGAACTCTCTTTCTCAAAGAAATGCTTAAGCGAGGCTACAGTTTCATATTCACAGACATAGATGTGATGTGGCTAAGGAACCCCTTTCCAAGGCTAATTAGCTTCAACGAAAGCATAGATCTTCAAATCAGCACCGATAGCTTCAATGGTGATCAATTGTCTGAAGCAAACCCCATCAACACAGGTTTCTACATGGTGAGATCTAACAACAGAACAATCTCCTTATTCGAGAAGTGGTATGCCCAGAAAAACTACTCAACCAAACTGAAAGAGCAGGATGTTTTAAATGGCATGATGAAGGAAGGTGTTTTCAGAGAGTTAGGCCTCAGCGTGAGGTTTTTGGACACCCGTTACTTCAGTGGCTTCTGTGAAGTTAGCAGGGACTTCAAAGCTGTCACAACCGTTCATGCCAATTGCTGCCGGACTATAGGTGCTAAGGTGGTTGATCTGACGGCTGTGGTTCACGATTGGAAGAGGTTCAAGAGCTTATCTAATTCCAATTCGACATTGACTTTGAAATGGACTAACCATGTAGCCTGTAATCGGTCCTGGAAGCGCAAAGTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

282

Amino Acids

32.75

Weight (kDa)

8.8

Isoelectric Point (pI)

26.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	2 cut(s)	459, 616
AfaI	GTAC	2 cut(s)	47, 242
AfiI	CCNNNNNNNGG	2 cut(s)	366, 819
AflII	CTTAAG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	7 cut(s)	128, 382, 401, 421, 664, 757, 793
AjnI	CCWGG	1 cut(s)	824
AluBI	AGCT	5 cut(s)	199, 378, 417, 668, 762
AluI	AGCT	5 cut(s)	199, 378, 417, 668, 762
Alw26I	GTCTC	2 cut(s)	180, 252
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	1 cut(s)	693
ArsI	GACNNNNNNTTYG	2 cut(s)	772, 804
Asp700I	GAANNNNTTC	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	2 cut(s)	437, 484
AsuII	TTCGAA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	822
BauI	CACGAG	2 cut(s)	111, 137
BbsI	GAAGAC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	1 cut(s)	826
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	180, 252
BfaI	CTAG	1 cut(s)	844
BfmI	CTRYAG	2 cut(s)	313, 702
BfrI	CTTAAG	1 cut(s)	302
BglII	AGATCT	2 cut(s)	394, 476
BisI	GCNGC	1 cut(s)	694
BlsI	GCNGC	1 cut(s)	695
Bme1390I	CCNGG	1 cut(s)	826
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	826
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
Bpu10I	CCTNAGC	3 cut(s)	350, 602, 711
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 819
BseBI	CCWGG	1 cut(s)	826
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	366, 819
BseMII	CTCAG	2 cut(s)	222, 616
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	600
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	697
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	2 cut(s)	366, 819
BsmAI	GTCTC	2 cut(s)	180, 252
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	2 cut(s)	223, 615
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
BssSI	CACGAG	2 cut(s)	111, 137
BssT1I	CCWWGG	1 cut(s)	365
Bst2BI	CACGAG	2 cut(s)	111, 137
Bst2UI	CCWGG	1 cut(s)	826
Bst4CI	ACNGT	4 cut(s)	19, 240, 317, 679
Bst6I	CTCTTC	1 cut(s)	743
BstAFI	CTTAAG	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	162
BstDEI	CTNAG	4 cut(s)	231, 350, 602, 711
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	559
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	6 cut(s)	151, 214, 397, 430, 479, 724
BstMAI	GTCTC	2 cut(s)	180, 252
BstMBI	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	1 cut(s)	826
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	824
BstSFI	CTRYAG	2 cut(s)	313, 702
BstSNI	TACGTA	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	680
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	394, 476
BstYI	RGATCY	2 cut(s)	394, 476
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	187, 640
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	2 cut(s)	46, 241
CviAII	CATG	7 cut(s)	98, 244, 265, 469, 568, 683, 806
CviQI	GTAC	2 cut(s)	46, 241
DdeI	CTNAG	4 cut(s)	231, 350, 602, 711
DpnI	GATC	6 cut(s)	150, 213, 396, 429, 478, 723
DpnII	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
DraI	TTTAAA	2 cut(s)	84, 561
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
Eco105I	TACGTA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	2 cut(s)	459, 616
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	7 cut(s)	101, 247, 268, 472, 571, 686, 809
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	7 cut(s)	97, 243, 264, 468, 567, 682, 805
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	694
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	694
FspBI	CTAG	1 cut(s)	844
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	1 cut(s)	694
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	1 cut(s)	697
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	7 cut(s)	101, 247, 268, 472, 571, 686, 809
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	697
HphI	GGTGA	2 cut(s)	437, 484
Hpy166II	GTNNAC	2 cut(s)	739, 841
Hpy188I	TCNGA	3 cut(s)	439, 590, 726
Hpy188III	TCNNGA	4 cut(s)	251, 505, 740, 757
Hpy8I	GTNNAC	2 cut(s)	739, 841
HpyAV	CCTTC	4 cut(s)	47, 194, 568, 572
HpyCH4III	ACNGT	4 cut(s)	19, 240, 317, 679
HpyCH4IV	ACGT	2 cut(s)	48, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	4 cut(s)	231, 350, 602, 711
HpySE526I	ACGT	2 cut(s)	48, 166
Hsp92II	CATG	7 cut(s)	101, 247, 268, 472, 571, 686, 809
HspAI	GCGC	1 cut(s)	832
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
Lsp1109I	GCAGC	1 cut(s)	680
MaeI	CTAG	1 cut(s)	844
MaeII	ACGT	2 cut(s)	48, 166
MaeIII	GTNAC	2 cut(s)	626, 670
MalI	GATC	6 cut(s)	150, 213, 396, 429, 478, 723
MboI	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
MboII	GAAGA	4 cut(s)	116, 125, 389, 760
MfeI	CAATTG	2 cut(s)	431, 688
MflI	RGATCY	2 cut(s)	394, 476
MluCI	AATT	6 cut(s)	24, 372, 431, 688, 769, 775
MnlI	CCTC	7 cut(s)	107, 220, 267, 302, 603, 611, 744
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	3 cut(s)	83, 303, 560
MslI	CAYNNNNRTG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	697
MspR9I	CCNGG	1 cut(s)	826
MunI	CAATTG	2 cut(s)	431, 688
MvaI	CCWGG	1 cut(s)	826
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
NlaIII	CATG	7 cut(s)	101, 247, 268, 472, 571, 686, 809
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	600
PciI	ACATGT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	752
Pfl23II	CGTACG	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	824
PkrI	GCNGC	1 cut(s)	695
Ppu21I	YACGTR	1 cut(s)	49
PscI	ACATGT	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	824
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	822
PsuI	RGATCY	2 cut(s)	394, 476
RsaI	GTAC	2 cut(s)	47, 242
RsaNI	GTAC	2 cut(s)	46, 241
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	83, 303, 560
SatI	GCNGC	1 cut(s)	694
Sau3AI	GATC	6 cut(s)	148, 211, 394, 427, 476, 721
Sau96I	GGNCC	1 cut(s)	822
ScrFI	CCNGG	1 cut(s)	826
SfcI	CTRYAG	2 cut(s)	313, 702
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	249, 302
SmoI	CTYRAG	2 cut(s)	249, 302
SnaBI	TACGTA	1 cut(s)	49
Sse9I	AATT	6 cut(s)	24, 372, 431, 688, 769, 775
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	844
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	824
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	4 cut(s)	19, 240, 317, 679
TaiI	ACGT	2 cut(s)	51, 169
TaqI	TCGA	5 cut(s)	147, 162, 201, 504, 779
TaqII	GACCGA	1 cut(s)	810
TasI	AATT	6 cut(s)	24, 372, 431, 688, 769, 775
TatI	WGTACW	1 cut(s)	240
Tru1I	TTAA	3 cut(s)	83, 303, 560
Tru9I	TTAA	3 cut(s)	83, 303, 560
TscAI	CASTG	2 cut(s)	194, 640
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	3 cut(s)	310, 587, 671
TspRI	CASTG	2 cut(s)	194, 640
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	822
XagI	CCTNNNNNAGG	1 cut(s)	364
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.