AT1G28695

BEST Arabidopsis thaliana protein match is Nucleotide-diphospho-sugar transferase family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002782
Physical Location & Seq
Reverse (-)
10081871 .. 10083122
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28695.1

Sequence Viewer

Length: 990 bp
ATGCCACTTTGCAATAATTTCTCCGGCAATCTCGTCGTCGCCGTTGCTCTCTTCTTTGCCGGCGCCCTATATATCTTCAACTACCAAAACTATGTCAACACTCTGAGAACAACACAGTATCCGGTAGATGAGCTAGAGGCGGCCTTGTATACGGCAGCCGCCGGAAACAACAAGACGGTGATAATAACGATGGTGAACAAAGCGTACGTGAAGGAGGTTGGAAGAGGGAGTACGATGCTTGATCTGTTTTTGGAGAGTTTTTGGGAAGGAGAAGGGACTCTACCACTTTTGGACCATCTAATGGTGGTGGCAGTGGATCAAACGGCCTATGATCGCTGCCGTTTCAAGAGGCTTCACTGCTACAAGATGGAGACTGAAGATGGGGTTGACTTAGAGGGAGAGAAAGTATTCATGTCAAAAGATTTCATTGAGATGATGTGGAGAAGGACTCGCTTGATCCTAGACGTTCTTCGTCGTGGCTACAATGTTATTTTCACGGACACGGACGTGATGTGGCTAAGGAGTCCATTGTCTCGGTTAAACATGAGCTTGGATATGCAAATAAGCGTGGACAGAATTAACGTGGGAGGACAGTTGATCAACACGGGATTCTACCACGTCCGGTCTAACAACAAGACCATCTCACTCTTCCAAAAATGGTACGACATGAGGCTAAACTCGACGGGGATGAAGGAACAAGACGTTCTCAAGAATCTCCTAGACTCCGGCTTCTTCAACCAGTTAGGTCTCAACGTTGGCTTCCTTAGTACCACCGAATTCAGCGGTTTTTGCCAAGACAGTCCTCACATGGGCGTTGTCACTACCGTCCATGCTAACTGCTGCCTCCACATCCCTGCCAAAGTCTTTGATCTCACTCGTGTTCTTCGTGATTGGAAACGCTACAAAGCGTCACATGTCAACAGCAAATGGAGCCCTCATCTTAAGTGTTCGCGTTCATGGAATGACACTCACTATATCCCTAGGCTCTGA

Protein Analysis

329

Amino Acids

37.92

Weight (kDa)

8.39

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 96 - 291 1.3e-62 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 301
AccI GTMKAC 1 cut(s) 149
AccII CGCG 1 cut(s) 952
AciI CCGC 3 cut(s) 140, 159, 783
AclI AACGTT 1 cut(s) 753
AclWI GGATC 2 cut(s) 324, 451
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 4 cut(s) 206, 232, 662, 769
AfiI CCNNNNNNNGG 2 cut(s) 301, 809
AflII CTTAAG 1 cut(s) 941
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 3 cut(s) 79, 346, 736
AjiI CACGTC 2 cut(s) 508, 619
AleI CACNNNNGTG 1 cut(s) 506
AluBI AGCT 2 cut(s) 133, 549
AluI AGCT 2 cut(s) 133, 549
Alw26I GTCTC 3 cut(s) 365, 537, 752
AlwI GGATC 2 cut(s) 324, 451
AoxI GGCC 2 cut(s) 141, 324
ApeKI GCWGC 3 cut(s) 155, 336, 840
ApoI RAATTY 1 cut(s) 776
Asp700I GAANNNNTTC 1 cut(s) 407
AspA2I CCTAGG 1 cut(s) 980
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 190, 205
AvaII GGWCC 1 cut(s) 292
AvrII CCTAGG 1 cut(s) 980
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 935
BarI GAAGNNNNNNTAC 4 cut(s) 214, 246, 264, 296
BauI CACGAG 1 cut(s) 876
BbvI GCAGC 3 cut(s) 167, 323, 827
BccI CCATC 5 cut(s) 184, 303, 361, 374, 647
BceAI ACGGC 4 cut(s) 26, 168, 324, 339
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciVI GTATCC 1 cut(s) 129
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 3 cut(s) 365, 537, 752
BfaI CTAG 4 cut(s) 134, 461, 719, 981
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 941
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 5 cut(s) 141, 156, 159, 337, 841
BlnI CCTAGG 1 cut(s) 980
BlsI GCNGC 5 cut(s) 142, 157, 160, 338, 842
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 2 cut(s) 508, 619
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 64, 932
BmsI GCATC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 692
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 980
BsaWI WCCGGW 2 cut(s) 121, 621
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 809
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 739
BseDI CCNNGG 1 cut(s) 980
BseGI GGATG 2 cut(s) 693, 849
BseLI CCNNNNNNNGG 2 cut(s) 301, 809
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 739
BseXI GCAGC 3 cut(s) 167, 323, 827
Bsh1236I CGCG 1 cut(s) 952
BshFI GGCC 2 cut(s) 143, 326
BshNI GGYRCC 1 cut(s) 62
BsiSI CCGG 6 cut(s) 24, 60, 122, 162, 622, 726
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 301, 809
BsmAI GTCTC 3 cut(s) 365, 537, 752
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 143, 326
Bso31I GGTCTC 1 cut(s) 752
Bsp1286I GDGCHC 1 cut(s) 935
Bsp143I GATC 6 cut(s) 241, 316, 331, 456, 597, 868
BspACI CCGC 3 cut(s) 140, 159, 783
BspANI GGCC 2 cut(s) 143, 326
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 952
BspLI GGNNCC 2 cut(s) 64, 932
BspPI GGATC 2 cut(s) 324, 451
BspT107I GGYRCC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 739
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 980
BssMI GATC 6 cut(s) 241, 316, 331, 456, 597, 868
BssNAI GTATAC 1 cut(s) 150
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 980
Bst1107I GTATAC 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 876
Bst4CI ACNGT 5 cut(s) 117, 178, 594, 800, 826
Bst6I CTCTTC 3 cut(s) 56, 217, 653
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 941
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 4 cut(s) 104, 391, 518, 764
BstF5I GGATG 2 cut(s) 693, 849
BstFNI CGCG 1 cut(s) 952
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 6 cut(s) 244, 319, 334, 459, 600, 871
BstMAI GTCTC 3 cut(s) 365, 537, 752
BstMBI GATC 6 cut(s) 241, 316, 331, 456, 597, 868
BstMWI GCNNNNNNNGC 2 cut(s) 789, 930
BstNSI RCATGY 1 cut(s) 917
BstUI CGCG 1 cut(s) 952
BstV1I GCAGC 3 cut(s) 167, 323, 827
BstZ17I GTATAC 1 cut(s) 150
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 2 cut(s) 143, 326
BtrI CACGTC 2 cut(s) 508, 619
BtsCI GGATG 2 cut(s) 693, 849
BtsI GCAGTG 2 cut(s) 318, 355
BtsIMutI CAGTG 2 cut(s) 318, 355
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 1 cut(s) 897
Csp6I GTAC 4 cut(s) 205, 231, 661, 768
CviAII CATG 7 cut(s) 412, 544, 667, 808, 830, 914, 957
CviQI GTAC 4 cut(s) 205, 231, 661, 768
DdeI CTNAG 4 cut(s) 104, 391, 518, 764
DinI GGCGCC 1 cut(s) 64
DpnI GATC 6 cut(s) 243, 318, 333, 458, 599, 870
DpnII GATC 6 cut(s) 241, 316, 331, 456, 597, 868
Eam1104I CTCTTC 3 cut(s) 56, 217, 653
EarI CTCTTC 3 cut(s) 56, 217, 653
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 1 cut(s) 935
Eco31I GGTCTC 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 980
EcoT38I GRGCYC 1 cut(s) 935
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 980
FaeI CATG 7 cut(s) 415, 547, 670, 811, 833, 917, 960
FaqI GGGAC 1 cut(s) 289
FatI CATG 7 cut(s) 411, 543, 666, 807, 829, 913, 956
FbaI TGATCA 1 cut(s) 597
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 5 cut(s) 141, 156, 159, 337, 841
FokI GGATG 2 cut(s) 700, 836
FriOI GRGCYC 1 cut(s) 935
Fsp4HI GCNGC 5 cut(s) 141, 156, 159, 337, 841
FspBI CTAG 4 cut(s) 134, 461, 719, 981
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 141, 156, 159, 337, 841
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 143, 326
HapII CCGG 6 cut(s) 24, 60, 122, 162, 622, 726
HgaI GACGC 1 cut(s) 897
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 7 cut(s) 415, 547, 670, 811, 833, 917, 960
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 3 cut(s) 97, 388, 919
HindII GTYRAC 3 cut(s) 97, 388, 919
HinfI GANTC 6 cut(s) 277, 448, 523, 609, 712, 722
HpaII CCGG 6 cut(s) 24, 60, 122, 162, 622, 726
HphI GGTGA 2 cut(s) 190, 205
Hpy166II GTNNAC 6 cut(s) 97, 150, 196, 388, 571, 919
Hpy188I TCNGA 2 cut(s) 105, 989
Hpy188III TCNNGA 3 cut(s) 346, 709, 887
Hpy8I GTNNAC 6 cut(s) 97, 150, 196, 388, 571, 919
Hpy99I CGWCG 4 cut(s) 38, 41, 477, 685
HpyAV CCTTC 5 cut(s) 205, 260, 266, 438, 685
HpyCH4III ACNGT 5 cut(s) 117, 178, 594, 800, 826
HpyCH4IV ACGT 7 cut(s) 207, 465, 507, 582, 618, 702, 753
HpyCH4V TGCA 2 cut(s) 12, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 789, 930
HpyF3I CTNAG 4 cut(s) 104, 391, 518, 764
HpySE526I ACGT 7 cut(s) 207, 465, 507, 582, 618, 702, 753
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 7 cut(s) 415, 547, 670, 811, 833, 917, 960
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 6 cut(s) 241, 316, 331, 456, 597, 868
LmnI GCTCC 1 cut(s) 930
LpnPI CCDG 8 cut(s) 37, 73, 135, 175, 635, 739, 752, 867
Lsp1109I GCAGC 3 cut(s) 167, 323, 827
LweI GCATC 1 cut(s) 225
MaeI CTAG 4 cut(s) 134, 461, 719, 981
MaeII ACGT 7 cut(s) 207, 465, 507, 582, 618, 702, 753
MaeIII GTNAC 2 cut(s) 817, 909
MalI GATC 6 cut(s) 243, 318, 333, 458, 599, 870
MboI GATC 6 cut(s) 241, 316, 331, 456, 597, 868
MboII GAAGA 8 cut(s) 43, 67, 234, 389, 461, 640, 724, 875
MhlI GDGCHC 1 cut(s) 935
MluCI AATT 3 cut(s) 16, 576, 776
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 4 cut(s) 271, 442, 532, 716
MmeI TCCRAC 1 cut(s) 199
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 3 cut(s) 539, 579, 942
MslI CAYNNNNRTG 2 cut(s) 431, 506
MspA1I CMGCKG 1 cut(s) 783
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 6 cut(s) 24, 60, 122, 162, 622, 726
MvnI CGCG 1 cut(s) 952
MwoI GCNNNNNNNGC 2 cut(s) 789, 930
NaeI GCCGGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 63
NdeII GATC 6 cut(s) 241, 316, 331, 456, 597, 868
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 7 cut(s) 415, 547, 670, 811, 833, 917, 960
NlaIV GGNNCC 2 cut(s) 64, 932
NmuCI GTSAC 2 cut(s) 817, 909
NspI RCATGY 1 cut(s) 917
OliI CACNNNNGTG 1 cut(s) 506
PciI ACATGT 1 cut(s) 913
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 883
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 609, 712
Pfl23II CGTACG 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 5 cut(s) 142, 157, 160, 338, 842
PleI GAGTC 4 cut(s) 271, 442, 531, 716
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 4 cut(s) 271, 442, 531, 716
Ppu21I YACGTR 1 cut(s) 208
PscI ACATGT 1 cut(s) 913
Psp1406I AACGTT 1 cut(s) 753
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 64, 932
PspPI GGNCC 1 cut(s) 292
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
RsaI GTAC 4 cut(s) 206, 232, 662, 769
RsaNI GTAC 4 cut(s) 205, 231, 661, 768
RseI CAYNNNNRTG 2 cut(s) 431, 506
SaqAI TTAA 3 cut(s) 539, 579, 942
SatI GCNGC 5 cut(s) 141, 156, 159, 337, 841
Sau3AI GATC 6 cut(s) 241, 316, 331, 456, 597, 868
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 4 cut(s) 271, 442, 532, 716
SduI GDGCHC 1 cut(s) 935
SfaNI GCATC 1 cut(s) 225
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 2 cut(s) 431, 506
SmlI CTYRAG 2 cut(s) 707, 941
SmoI CTYRAG 2 cut(s) 707, 941
Sse9I AATT 3 cut(s) 16, 576, 776
SsiI CCGC 3 cut(s) 140, 159, 783
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 4 cut(s) 134, 461, 719, 981
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 5 cut(s) 117, 178, 594, 800, 826
TaiI ACGT 7 cut(s) 210, 468, 510, 585, 621, 705, 756
TaqI TCGA 1 cut(s) 680
TasI AATT 3 cut(s) 16, 576, 776
TauI GCSGC 2 cut(s) 143, 161
TfiI GAWTC 2 cut(s) 609, 712
Tru1I TTAA 3 cut(s) 539, 579, 942
Tru9I TTAA 3 cut(s) 539, 579, 942
TscAI CASTG 2 cut(s) 318, 362
TseFI GTSAC 2 cut(s) 817, 909
TseI GCWGC 3 cut(s) 155, 336, 840
Tsp45I GTSAC 2 cut(s) 817, 909
TspDTI ATGAA 4 cut(s) 400, 415, 704, 945
TspGWI ACGGA 2 cut(s) 512, 518
TspRI CASTG 2 cut(s) 318, 362
Van91I CCANNNNNTGG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 917
XmaJI CCTAGG 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 4 cut(s) 134, 461, 719, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.