MD07G1096700.v1.1

At1g28695-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
10612952 .. 10620800
7849 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1096700.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGACCTTTCTACCGAACCTACTCATCCATCGGCCTCATTCTTCTCTCAGAGGCTTAGACTTCATCCATACGCCCGAAAACCCAGCACTCTTTTTAGACCCCAAAACCAAAAACCACCCACGCATATACACAAAACACACACACACACACCCTCAAATGGATCACCCAAAACACTCCTCTCTCAGATCCAATCTTGCCTTCCTCGCTTTATTCTTGGCTTGCGTTGTTTATGTTTGCATATGGTCGTCTTCTTCCTCTCTAATAAACCCTCTCTTTCCCTTTCAGAAACGTGGCGTCGACTGTGCGTCGCAAACAACCACAACCGCCGCCACCACGGAATTTAATGTGGTGGAAGACGAGCTTGAGACCGTCTTGGGCAAGGCCTCGATGGATAACAAGACCGTGATCATTGCCGTTATCAACAAGGCATATGCAGTCCAAGATGTGAAGGCAGACACCACCATGCTTGACCTTTTTATTGAGAGCTTTTGGCAAGGGGAGGGCACGATGACGTTGGTCGACCACCTCGTCCTCGTGGCGGTTGATCAAACCGCCTACGACCGGTGCATGTTTCTGCGGCTGAATTGCTACCGGTTGGAGACGGAGGGTGTGGATTTTGGGGGAGAGAAGCTTTTCATGTCTGAAGATTTTATCAAGATGATGTGGAGGAGAACTTGGTTACTGTTGGAGGTCCTCAAGCGTGGCTACAGCTTCGTGTTTACGGATACCGATGTTGTGTGGCTAAGGGACCCCTTCAAAAAACTAAGCAAGAACGAAACAGAAGATTTACAAATGAGTACAGATATGTTCTTCGGGGATCCTTGGAACGCAAGTCAGTTGATCAACACTGGCTTCTACTACGTCAGATCCAATAGCAAGACCATAGCACTGTTTGATAGATGGTACACCTCCAAGGACAATGCCACAGGACTGAAAGAGCAGGATGTCCTATTGAACTTATTCCGAGGGGGTATTACCGGGGAGTTGGGACTTAGGGTAAGGTTCTTAGACACCCTCTATTTCAGTGGTTTTTGCCAAAACAGCAGGGACTTCGGGCAAGTGAGCACGGTCCACGCCAATTGTTGCCGGAGTATTGTCGCCAAAGTTAAGGACTTGAAAGCCGTCCTCCGGGATTGGAAACGGTTCAAGAGGTTCATGTCCCACAAGAGGAGTTCTGGTACTAGTACGACGAGTTTCCAATGGACTGGGCACTTTGGATGTTGGAATTCCTGGGCTGTTCCCAATTAA

Protein Analysis

416

Amino Acids

47.68

Weight (kDa)

8.48

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 172 - 372 1.2e-60 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AccI GTMKAC 2 cut(s) 297, 519
AciI CCGC 5 cut(s) 324, 327, 539, 552, 577
AclWI GGATC 5 cut(s) 168, 180, 812, 825, 861
AcsI RAATTY 2 cut(s) 338, 1225
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 4 cut(s) 799, 905, 1180, 1186
AfiI CCNNNNNNNGG 5 cut(s) 157, 538, 561, 1128, 1167
AgeI ACCGGT 2 cut(s) 561, 591
AgsI TTSAA 4 cut(s) 757, 955, 1117, 1147
AhdI GACNNNNNGTC 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 1181
AjnI CCWGG 1 cut(s) 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 4 cut(s) 361, 486, 631, 711
AluI AGCT 4 cut(s) 361, 486, 631, 711
Alw21I GWGCWC 1 cut(s) 1067
Alw26I GTCTC 2 cut(s) 359, 593
AlwI GGATC 5 cut(s) 168, 180, 812, 825, 861
AoxI GGCC 2 cut(s) 32, 381
ApoI RAATTY 2 cut(s) 338, 1225
AsiGI ACCGGT 2 cut(s) 561, 591
Asp700I GAANNNNTTC 3 cut(s) 632, 959, 1142
AspS9I GGNCC 3 cut(s) 691, 748, 1069
AsuC2I CCSGG 2 cut(s) 979, 1130
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 3 cut(s) 691, 748, 1069
BaeGI GKGCMC 2 cut(s) 506, 1212
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BamHI GGATCC 1 cut(s) 817
BauI CACGAG 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 240, 360
Bbv12I GWGCWC 1 cut(s) 1067
BccI CCATC 3 cut(s) 36, 382, 894
BceAI ACGGC 2 cut(s) 398, 1106
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 1 cut(s) 1231
BciVI GTATCC 1 cut(s) 718
BclI TGATCA 3 cut(s) 405, 544, 840
BcnI CCSGG 2 cut(s) 979, 1130
BcoDI GTCTC 2 cut(s) 359, 593
BcuI ACTAGT 1 cut(s) 1181
BfaI CTAG 1 cut(s) 1182
BfmI CTRYAG 1 cut(s) 706
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 2 cut(s) 327, 578
BlsI GCNGC 2 cut(s) 328, 579
Bme1390I CCNGG 3 cut(s) 979, 1130, 1231
Bme18I GGWCC 3 cut(s) 691, 748, 1069
BmeRI GACNNNNNGTC 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 691, 748, 1069
BmiI GGNNCC 3 cut(s) 749, 750, 819
BmrFI CCNGG 3 cut(s) 979, 1130, 1231
BmrI ACTGGG 1 cut(s) 1215
BmuI ACTGGG 1 cut(s) 1215
BoxI GACNNNNGTC 1 cut(s) 515
BpiI GAAGAC 2 cut(s) 240, 360
Bpu10I CCTNAGC 1 cut(s) 743
BpuEI CTTGAG 2 cut(s) 383, 680
BpuMI CCSGG 2 cut(s) 979, 1130
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 6 cut(s) 333, 821, 912, 964, 978, 1230
BsaWI WCCGGW 2 cut(s) 561, 591
BsaXI ACNNNNNCTCC 2 cut(s) 1162, 1192
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 538, 561, 1128, 1167
Bse118I RCCGGY 2 cut(s) 561, 591
Bse1I ACTGG 2 cut(s) 853, 1210
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 1231
BseDI CCNNGG 6 cut(s) 333, 821, 912, 964, 978, 1230
BseGI GGATG 4 cut(s) 24, 63, 949, 1223
BseLI CCNNNNNNNGG 5 cut(s) 157, 538, 561, 1128, 1167
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 61, 196
BseNI ACTGG 2 cut(s) 853, 1210
BseRI GAGGAG 3 cut(s) 166, 682, 1183
BseSI GKGCMC 2 cut(s) 506, 1212
BseYI CCCAGC 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 2 cut(s) 34, 383
BshTI ACCGGT 2 cut(s) 561, 591
BsiEI CGRYCG 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 1067
BsiSI CCGG 5 cut(s) 562, 592, 978, 1087, 1129
BslFI GGGAC 4 cut(s) 761, 1002, 1061, 1144
BslI CCNNNNNNNGG 5 cut(s) 157, 538, 561, 1128, 1167
BsmAI GTCTC 2 cut(s) 359, 593
BsmBI CGTCTC 1 cut(s) 593
BsmFI GGGAC 4 cut(s) 761, 1002, 1061, 1144
BsnI GGCC 2 cut(s) 34, 383
Bso31I GGTCTC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 506, 1067, 1212
Bsp143I GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
BspACI CCGC 5 cut(s) 324, 327, 539, 552, 577
BspANI GGCC 2 cut(s) 34, 383
BspCNI CTCAG 2 cut(s) 60, 195
BspLI GGNNCC 3 cut(s) 749, 750, 819
BspPI GGATC 5 cut(s) 168, 180, 812, 825, 861
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 2 cut(s) 561, 591
BsrI ACTGG 2 cut(s) 853, 1210
BssAI RCCGGY 2 cut(s) 561, 591
BssECI CCNNGG 6 cut(s) 333, 821, 912, 964, 978, 1230
BssMI GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
BssNI GRCGYC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 533
BssT1I CCWWGG 2 cut(s) 821, 912
Bst2BI CACGAG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 1231
Bst4CI ACNGT 7 cut(s) 302, 370, 403, 684, 891, 1069, 1143
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 7 cut(s) 47, 55, 182, 743, 764, 992, 1006
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 4 cut(s) 24, 63, 949, 1223
BstKTI GATC 7 cut(s) 163, 188, 408, 547, 820, 843, 869
BstMAI GTCTC 2 cut(s) 359, 593
BstMBI GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 2 cut(s) 203, 1041
BstNI CCWGG 1 cut(s) 1231
BstNSI RCATGY 1 cut(s) 571
BstPAI GACNNNNGTC 1 cut(s) 515
BstSCI CCNGG 3 cut(s) 977, 1128, 1229
BstSFI CTRYAG 1 cut(s) 706
BstSLI GKGCMC 2 cut(s) 506, 1212
BstV2I GAAGAC 2 cut(s) 240, 360
BstX2I RGATCY 3 cut(s) 185, 817, 866
BstXI CCANNNNNNTGG 1 cut(s) 1205
BstYI RGATCY 3 cut(s) 185, 817, 866
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 2 cut(s) 34, 383
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 4 cut(s) 24, 63, 949, 1223
BtsIMutI CAGTG 3 cut(s) 846, 887, 1030
Cac8I GCNNGC 1 cut(s) 220
Cfr10I RCCGGY 2 cut(s) 561, 591
Cfr13I GGNCC 3 cut(s) 691, 748, 1069
CseI GACGC 2 cut(s) 283, 294
Csp6I GTAC 4 cut(s) 798, 904, 1179, 1185
CspAI ACCGGT 2 cut(s) 561, 591
CspCI CAANNNNNGTGG 4 cut(s) 448, 483, 1061, 1096
CviAII CATG 4 cut(s) 463, 568, 637, 1156
CviQI GTAC 4 cut(s) 798, 904, 1179, 1185
DdeI CTNAG 7 cut(s) 47, 55, 182, 743, 764, 992, 1006
DpnI GATC 7 cut(s) 162, 187, 407, 546, 819, 842, 868
DpnII GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
DrdI GACNNNNNNGTC 1 cut(s) 527
DriI GACNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 527
Eam1105I GACNNNNNGTC 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 821, 912
Eco147I AGGCCT 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 3 cut(s) 691, 748, 1069
Eco57I CTGAAG 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 691, 748
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 1 cut(s) 1229
EcoT14I CCWWGG 2 cut(s) 821, 912
ErhI CCWWGG 2 cut(s) 821, 912
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 4 cut(s) 466, 571, 640, 1159
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 4 cut(s) 761, 1002, 1061, 1144
FatI CATG 4 cut(s) 462, 567, 636, 1155
FauNDI CATATG 2 cut(s) 239, 430
FbaI TGATCA 3 cut(s) 405, 544, 840
FblI GTMKAC 2 cut(s) 297, 519
Fnu4HI GCNGC 2 cut(s) 327, 578
FokI GGATG 4 cut(s) 11, 50, 956, 1230
Fsp4HI GCNGC 2 cut(s) 327, 578
FspBI CTAG 1 cut(s) 1182
GluI GCNGC 2 cut(s) 327, 578
GsaI CCCAGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 34, 383
HapII CCGG 5 cut(s) 562, 592, 978, 1087, 1129
HgaI GACGC 2 cut(s) 283, 294
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 4 cut(s) 466, 571, 640, 1159
HincII GTYRAC 2 cut(s) 298, 520
HindII GTYRAC 2 cut(s) 298, 520
HindIII AAGCTT 1 cut(s) 629
HpaII CCGG 5 cut(s) 562, 592, 978, 1087, 1129
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 5 cut(s) 298, 520, 720, 906, 1072
Hpy188I TCNGA 6 cut(s) 50, 185, 285, 643, 866, 965
Hpy188III TCNNGA 2 cut(s) 655, 1147
Hpy8I GTNNAC 5 cut(s) 298, 520, 720, 906, 1072
Hpy99I CGWCG 3 cut(s) 299, 310, 1192
HpyAV CCTTC 3 cut(s) 208, 442, 763
HpyCH4III ACNGT 7 cut(s) 302, 370, 403, 684, 891, 1069, 1143
HpyCH4IV ACGT 3 cut(s) 289, 512, 861
HpyCH4V TGCA 3 cut(s) 237, 434, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 1041
HpyF3I CTNAG 7 cut(s) 47, 55, 182, 743, 764, 992, 1006
HpySE526I ACGT 3 cut(s) 289, 512, 861
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 4 cut(s) 466, 571, 640, 1159
KflI GGGWCCC 1 cut(s) 748
Ksp22I TGATCA 3 cut(s) 405, 544, 840
Kzo9I GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
MaeI CTAG 1 cut(s) 1182
MaeII ACGT 3 cut(s) 289, 512, 861
MaeIII GTNAC 1 cut(s) 678
MalI GATC 7 cut(s) 162, 187, 407, 546, 819, 842, 868
MboI GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
MboII GAAGA 7 cut(s) 33, 240, 243, 365, 656, 794, 802
MfeI CAATTG 1 cut(s) 1078
MflI RGATCY 3 cut(s) 185, 817, 866
MhlI GDGCHC 3 cut(s) 506, 1067, 1212
MluCI AATT 5 cut(s) 338, 583, 1078, 1225, 1243
MmeI TCCRAC 3 cut(s) 576, 666, 1202
MroXI GAANNNNTTC 3 cut(s) 632, 959, 1142
MseI TTAA 3 cut(s) 342, 1107, 1246
MslI CAYNNNNRTG 1 cut(s) 461
MspI CCGG 5 cut(s) 562, 592, 978, 1087, 1129
MspR9I CCNGG 3 cut(s) 979, 1130, 1231
MunI CAATTG 1 cut(s) 1078
MvaI CCWGG 1 cut(s) 1231
MwoI GCNNNNNNNGC 2 cut(s) 203, 1041
NciI CCSGG 2 cut(s) 979, 1130
NdeI CATATG 2 cut(s) 239, 430
NdeII GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
NlaIII CATG 4 cut(s) 466, 571, 640, 1159
NlaIV GGNNCC 3 cut(s) 749, 750, 819
NspI RCATGY 1 cut(s) 571
PceI AGGCCT 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PdmI GAANNNNTTC 3 cut(s) 632, 959, 1142
PfoI TCCNGGA 1 cut(s) 1128
PinAI ACCGGT 2 cut(s) 561, 591
PkrI GCNGC 2 cut(s) 328, 579
PpuMI RGGWCCY 2 cut(s) 691, 748
PshAI GACNNNNGTC 1 cut(s) 515
Psp5II RGGWCCY 2 cut(s) 691, 748
Psp6I CCWGG 1 cut(s) 1229
PspFI CCCAGC 1 cut(s) 82
PspGI CCWGG 1 cut(s) 1229
PspN4I GGNNCC 3 cut(s) 749, 750, 819
PspPI GGNCC 3 cut(s) 691, 748, 1069
PspPPI RGGWCCY 2 cut(s) 691, 748
PsuI RGATCY 3 cut(s) 185, 817, 866
RsaI GTAC 4 cut(s) 799, 905, 1180, 1186
RsaNI GTAC 4 cut(s) 798, 904, 1179, 1185
RseI CAYNNNNRTG 1 cut(s) 461
SalI GTCGAC 2 cut(s) 296, 518
SaqAI TTAA 3 cut(s) 342, 1107, 1246
SatI GCNGC 2 cut(s) 327, 578
Sau3AI GATC 7 cut(s) 160, 185, 405, 544, 817, 840, 866
Sau96I GGNCC 3 cut(s) 691, 748, 1069
ScrFI CCNGG 3 cut(s) 979, 1130, 1231
SduI GDGCHC 3 cut(s) 506, 1067, 1212
SfcI CTRYAG 1 cut(s) 706
SinI GGWCC 3 cut(s) 691, 748, 1069
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 362, 695
SmoI CTYRAG 2 cut(s) 362, 695
SpeI ACTAGT 1 cut(s) 1181
Sse9I AATT 5 cut(s) 338, 583, 1078, 1225, 1243
SseBI AGGCCT 1 cut(s) 383
SsiI CCGC 5 cut(s) 324, 327, 539, 552, 577
SspMI CTAG 1 cut(s) 1182
StuI AGGCCT 1 cut(s) 383
StyD4I CCNGG 3 cut(s) 977, 1128, 1229
StyI CCWWGG 2 cut(s) 821, 912
TaaI ACNGT 7 cut(s) 302, 370, 403, 684, 891, 1069, 1143
TaiI ACGT 3 cut(s) 292, 515, 864
TaqI TCGA 3 cut(s) 297, 386, 519
TasI AATT 5 cut(s) 338, 583, 1078, 1225, 1243
TatI WGTACW 1 cut(s) 797
TauI GCSGC 2 cut(s) 329, 580
Tru1I TTAA 3 cut(s) 342, 1107, 1246
Tru9I TTAA 3 cut(s) 342, 1107, 1246
TscAI CASTG 3 cut(s) 853, 894, 1030
TspDTI ATGAA 3 cut(s) 52, 625, 1144
TspGWI ACGGA 3 cut(s) 350, 617, 737
TspRI CASTG 3 cut(s) 853, 894, 1030
VpaK11BI GGWCC 3 cut(s) 691, 748, 1069
XapI RAATTY 2 cut(s) 338, 1225
XceI RCATGY 1 cut(s) 571
XmiI GTMKAC 2 cut(s) 297, 519
XmnI GAANNNNTTC 3 cut(s) 632, 959, 1142
XspI CTAG 1 cut(s) 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.