Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Reverse (-)

27382587 .. 27385151

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G268700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGACAATCGAAATATTACATTATTTTGCCTTCTGTTTGCTGGTTTAGTTTTATTTTTAATGTTCAACCAGACCACGGATGGATCCAAACCACTCTTCGTCTTCCAAACTCACCAATGCCAATCCTCTACCAAGAGCAACACAATTGGCCCTGGAGATGGGCTTGAATCAGCTTTATCTGAGGCTTCCATGGCAAACAAGACTGTGATAATTGCTATTGTAAATAAGGCCTATGTGGAAGGAGACAAGCCAATGCTTGATATGTTTTTAGATGGTTTCTGGCTCGGAGAATACACAAGGGGCTTGATTTCTCACCTGCTTCTTGTTGCCGTCGATCAAACTTCCTTCGAACGTTGCAAGTTTCTTCACCTTCACTGCTACAAGCTCAAAGCAGATGGTGCTGATTTTGAGACGGAGGAACTCTACATGTCGCAAGATTTTATCAAGATGATGTGGAGGAGAACCCTGTTTCTCAAGGAGGTGCTAAGGAGAGGCTATAGTTTTGTATTCACAGACATAGATGTGTTGTGGCTAAGGAACCCATTCCCAAGGCTAACAATTTTCAATGAAAACATAGATCTTCAAATCAGCGTTGATAAATTCAATGGGGATGAATGGTCTCAAGCCAACCCCATCAACACAGGCTTCTACATGGTCAGGTCCAACAACAGAACAATCTCGCTATTCGAGGAGTGGTACGCTAGAAGAAACAACTCCACAGGATTGAAAGAGCAGGATGTTTTGAACAACATGATGCAGGAAGGTTTTTTCAGAGAGTTAGGCCTCAGTGTGAGGTTTTTGGACACCCTTTATTTCAGTGGCTTCTGTGAAGTTAGCAAAGACTTCAACGTTGTCAGGACGGTTCATGCCAACTGCTGCCGGACTATAAGTGCTAAGGTGGCTGATCTGACCGCTGCGATTCACGATTGGAAGAGGTTCAAGAGCTTATCCGATTCCAATCAACCGTCGACTTTGACATGGACTAGCCATGTAAATTGTGAGGGCTCCTGGAAGAATTTCAACGTGACCCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

346

Amino Acids

39.71

Weight (kDa)

6.01

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	968
AciI	CCGC	1 cut(s)	912
AclI	AACGTT	2 cut(s)	352, 849
AclWI	GGATC	2 cut(s)	78, 91
AcsI	RAATTY	2 cut(s)	599, 1015
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	76, 158
AflIII	ACRYGT	1 cut(s)	426
AjnI	CCWGG	2 cut(s)	151, 1007
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	3 cut(s)	173, 385, 945
AluI	AGCT	3 cut(s)	173, 385, 945
Alw26I	GTCTC	3 cut(s)	237, 404, 624
AlwI	GGATC	2 cut(s)	78, 91
AoxI	GGCC	3 cut(s)	148, 228, 781
ApeKI	GCWGC	2 cut(s)	876, 914
ApoI	RAATTY	2 cut(s)	599, 1015
Asp700I	GAANNNNTTC	3 cut(s)	542, 935, 1016
AspS9I	GGNCC	2 cut(s)	149, 660
AsuHPI	GGTGA	3 cut(s)	104, 305, 359
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	1007
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	863, 901
BccI	CCATC	5 cut(s)	74, 152, 266, 389, 641
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	2 cut(s)	153, 1009
BcoDI	GTCTC	3 cut(s)	237, 404, 624
BfaI	CTAG	3 cut(s)	702, 984, 1036
BfmI	CTRYAG	1 cut(s)	496
BfuAI	ACCTGC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	2 cut(s)	877, 915
BlsI	GCNGC	2 cut(s)	878, 916
Bme1390I	CCNGG	2 cut(s)	153, 1009
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	149, 660
BmiI	GGNNCC	3 cut(s)	85, 539, 1006
BmrFI	CCNGG	2 cut(s)	153, 1009
BmsI	GCATC	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	3 cut(s)	485, 533, 894
Bpu14I	TTCGAA	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	458, 606
BsaBI	GATNNNNATC	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	5 cut(s)	75, 151, 189, 548, 1030
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 158
Bse8I	GATNNNNATC	1 cut(s)	957
BseBI	CCWGG	2 cut(s)	153, 1009
BseDI	CCNNGG	5 cut(s)	75, 151, 189, 548, 1030
BseGI	GGATG	3 cut(s)	85, 616, 742
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	2 cut(s)	76, 158
BseMII	CTCAG	2 cut(s)	171, 799
BseRI	GAGGAG	2 cut(s)	472, 704
BseXI	GCAGC	2 cut(s)	863, 901
BshFI	GGCC	3 cut(s)	150, 230, 783
BsiSI	CCGG	1 cut(s)	880
BslI	CCNNNNNNNGG	2 cut(s)	76, 158
BsmAI	GTCTC	3 cut(s)	237, 404, 624
BsmBI	CGTCTC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	150, 230, 783
Bso31I	GGTCTC	1 cut(s)	624
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	1007
Bsp143I	GATC	4 cut(s)	83, 334, 577, 904
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	912
BspANI	GGCC	3 cut(s)	150, 230, 783
BspCNI	CTCAG	2 cut(s)	172, 798
BspLI	GGNNCC	3 cut(s)	85, 539, 1006
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	78, 91
BspT104I	TTCGAA	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	624
BssECI	CCNNGG	5 cut(s)	75, 151, 189, 548, 1030
BssMI	GATC	4 cut(s)	83, 334, 577, 904
BssT1I	CCWWGG	3 cut(s)	189, 548, 1030
Bst2UI	CCWGG	2 cut(s)	153, 1009
Bst4CI	ACNGT	3 cut(s)	205, 862, 966
Bst6I	CTCTTC	2 cut(s)	101, 926
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	180, 485, 533, 785, 894
BstDSI	CCRYGG	2 cut(s)	75, 189
BstF5I	GGATG	3 cut(s)	85, 616, 742
BstKTI	GATC	4 cut(s)	86, 337, 580, 907
BstMAI	GTCTC	3 cut(s)	237, 404, 624
BstMBI	GATC	4 cut(s)	83, 334, 577, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 398, 899
BstNI	CCWGG	2 cut(s)	153, 1009
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	151, 1007
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	863, 901
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	83, 577
BstYI	RGATCY	2 cut(s)	83, 577
BsuRI	GGCC	3 cut(s)	150, 230, 783
BtgI	CCRYGG	2 cut(s)	75, 189
BtsCI	GGATG	3 cut(s)	85, 616, 742
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	373, 793, 823
BveI	ACCTGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	149, 660
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	7 cut(s)	190, 427, 652, 751, 866, 978, 989
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	5 cut(s)	180, 485, 533, 785, 894
DpnI	GATC	4 cut(s)	85, 336, 579, 906
DpnII	GATC	4 cut(s)	83, 334, 577, 904
Eam1104I	CTCTTC	2 cut(s)	101, 926
EarI	CTCTTC	2 cut(s)	101, 926
Eco130I	CCWWGG	3 cut(s)	189, 548, 1030
Eco147I	AGGCCT	2 cut(s)	230, 783
Eco24I	GRGCYC	1 cut(s)	1007
Eco31I	GGTCTC	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	151, 1007
EcoT14I	CCWWGG	3 cut(s)	189, 548, 1030
EcoT38I	GRGCYC	1 cut(s)	1007
ErhI	CCWWGG	3 cut(s)	189, 548, 1030
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	7 cut(s)	193, 430, 655, 754, 869, 981, 992
FatI	CATG	7 cut(s)	189, 426, 651, 750, 865, 977, 988
FblI	GTMKAC	1 cut(s)	968
Fnu4HI	GCNGC	2 cut(s)	877, 915
FokI	GGATG	3 cut(s)	92, 623, 749
FriOI	GRGCYC	1 cut(s)	1007
Fsp4HI	GCNGC	2 cut(s)	877, 915
FspBI	CTAG	3 cut(s)	702, 984, 1036
GluI	GCNGC	2 cut(s)	877, 915
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	150, 230, 783
HapII	CCGG	1 cut(s)	880
Hin1II	CATG	7 cut(s)	193, 430, 655, 754, 869, 981, 992
HincII	GTYRAC	1 cut(s)	969
HindII	GTYRAC	1 cut(s)	969
HinfI	GANTC	3 cut(s)	167, 919, 953
HpaII	CCGG	1 cut(s)	880
HphI	GGTGA	3 cut(s)	104, 305, 359
Hpy166II	GTNNAC	1 cut(s)	969
Hpy188I	TCNGA	5 cut(s)	181, 287, 773, 909, 952
Hpy188III	TCNNGA	4 cut(s)	445, 856, 923, 940
Hpy8I	GTNNAC	1 cut(s)	969
Hpy99I	CGWCG	2 cut(s)	335, 970
HpyAV	CCTTC	5 cut(s)	41, 233, 355, 380, 755
HpyCH4III	ACNGT	3 cut(s)	205, 862, 966
HpyCH4IV	ACGT	3 cut(s)	352, 849, 1023
HpyCH4V	TGCA	2 cut(s)	357, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 398, 899
HpyF3I	CTNAG	5 cut(s)	180, 485, 533, 785, 894
HpySE526I	ACGT	3 cut(s)	352, 849, 1023
Hsp92II	CATG	7 cut(s)	193, 430, 655, 754, 869, 981, 992
Kzo9I	GATC	4 cut(s)	83, 334, 577, 904
LmnI	GCTCC	1 cut(s)	1010
Lsp1109I	GCAGC	2 cut(s)	863, 901
LweI	GCATC	1 cut(s)	744
MaeI	CTAG	3 cut(s)	702, 984, 1036
MaeII	ACGT	3 cut(s)	352, 849, 1023
MaeIII	GTNAC	1 cut(s)	1024
MalI	GATC	4 cut(s)	85, 336, 579, 906
MboI	GATC	4 cut(s)	83, 334, 577, 904
MboII	GAAGA	7 cut(s)	88, 94, 356, 572, 717, 943, 1024
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	2 cut(s)	83, 577
MhlI	GDGCHC	1 cut(s)	1007
MluCI	AATT	6 cut(s)	144, 210, 558, 599, 994, 1015
MmeI	TCCRAC	1 cut(s)	687
MroXI	GAANNNNTTC	3 cut(s)	542, 935, 1016
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	1 cut(s)	880
MspR9I	CCNGG	2 cut(s)	153, 1009
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	153, 1009
MwoI	GCNNNNNNNGC	3 cut(s)	191, 398, 899
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	83, 334, 577, 904
NlaIII	CATG	7 cut(s)	193, 430, 655, 754, 869, 981, 992
NlaIV	GGNNCC	3 cut(s)	85, 539, 1006
NmuCI	GTSAC	1 cut(s)	1024
NspI	RCATGY	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	324
PceI	AGGCCT	2 cut(s)	230, 783
PciI	ACATGT	1 cut(s)	426
PdmI	GAANNNNTTC	3 cut(s)	542, 935, 1016
PfeI	GAWTC	3 cut(s)	167, 919, 953
PfoI	TCCNGGA	1 cut(s)	1007
PkrI	GCNGC	2 cut(s)	878, 916
PscI	ACATGT	1 cut(s)	426
Psp1406I	AACGTT	2 cut(s)	352, 849
Psp6I	CCWGG	2 cut(s)	151, 1007
PspGI	CCWGG	2 cut(s)	151, 1007
PspN4I	GGNNCC	3 cut(s)	85, 539, 1006
PspPI	GGNCC	2 cut(s)	149, 660
PsuI	RGATCY	2 cut(s)	83, 577
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	521
SalI	GTCGAC	1 cut(s)	967
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	877, 915
Sau3AI	GATC	4 cut(s)	83, 334, 577, 904
Sau96I	GGNCC	2 cut(s)	149, 660
ScrFI	CCNGG	2 cut(s)	153, 1009
SduI	GDGCHC	1 cut(s)	1007
SfaNI	GCATC	1 cut(s)	744
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	473, 621
SmoI	CTYRAG	2 cut(s)	473, 621
Sse9I	AATT	6 cut(s)	144, 210, 558, 599, 994, 1015
SseBI	AGGCCT	2 cut(s)	230, 783
SsiI	CCGC	1 cut(s)	912
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	3 cut(s)	702, 984, 1036
StuI	AGGCCT	2 cut(s)	230, 783
StyD4I	CCNGG	2 cut(s)	151, 1007
StyI	CCWWGG	3 cut(s)	189, 548, 1030
TaaI	ACNGT	3 cut(s)	205, 862, 966
TaiI	ACGT	3 cut(s)	355, 852, 1026
TaqI	TCGA	5 cut(s)	10, 333, 348, 687, 968
TasI	AATT	6 cut(s)	144, 210, 558, 599, 994, 1015
TfiI	GAWTC	3 cut(s)	167, 919, 953
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	3 cut(s)	380, 793, 823
TseFI	GTSAC	1 cut(s)	1024
TseI	GCWGC	2 cut(s)	876, 914
Tsp45I	GTSAC	1 cut(s)	1024
TspDTI	ATGAA	3 cut(s)	582, 627, 854
TspGWI	ACGGA	2 cut(s)	92, 428
TspRI	CASTG	3 cut(s)	380, 793, 823
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	2 cut(s)	599, 1015
XceI	RCATGY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	968
XmnI	GAANNNNTTC	3 cut(s)	542, 935, 1016
XspI	CTAG	3 cut(s)	702, 984, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.