Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Forward (+)

17786619 .. 17790424

Gene Structure 3806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G120400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATAATCAACCAAAACACTCCTCTATTGGATCCAATCTTGCCTGTCTCTCCTTACTCTTGGCTTGTGCTGTTTATCTTTGTATATGGTCTTCTTCATCCTCCCTCATAAACCCTCTCTTTAGCTTTCAGAAACATGATGCCCAATGCCCGTCAAAGAACCCAACCACCACTACATTTAATGTGGCTCCAGATGAGCTTTTGGCCACCCTAGACAAGGCCTCCATTGGCAACAAGACTGTGATCATTGCTGTTATAAACAAGGCCTACGCAGTCCAAGAGGTCAAGGCAGACACCACCATGCTTGACCTTTTCATCGAGAGTTTTTGGCAAGGGGAGGACACTAGGCATCTGCTTGATCATCTTGTGCTCGTGGCGGTTGATCAGACGGCCTACGATCGCTGCCAGTTTCTGAGGCTCAACTGCTACCGGCTGGAAACGGACAGTGTTGATTTTGGGGGAGAGAAGCTTTACATGTCTCAAGATTTCATCAAGATGATGTGGAGAAGAACTTGGTTTCTGTTGGAGGTTCTAAAACGCGGTTACAGCTTCATATTCACGGACACTGATGTTTTGTGGCTAAGGAATCCGTTCTCAAGACTAAGCCAGAACGAAACTGAGGATTTACAAATAAGCACAGATATGTTCTTTGGAGATCCATGGAACGAAACACTAATCAACACTGGCTTCTACCACATCAGATCGAACAACAAGACCATTGCACTGTTTGATAGATGGTACAACATGAAGGACAATGCCACGGGACAGAAAGAGCAGGATGTCCTATTAGACCTAATCCGAGGGGGCATCATTGGGCAGCTGGGGCTTAAGGTTAGGTTCTTGGACACCCTCTATTTCAGTGGCTTTTGCCAAGATAGCAAGGACTTTGGGGCAGTGACCACTGTCCATGCCAACTGTTGCCGGAGCATCGTGGCCAAGGTTAAGGACTTGAAGGCTGTCCTCCAGGACTGGAAGCAGTTCAAGAAGACCACGGCCCAGAAAACAACTGCCGGTCTAGCAACAGATGGTTTCCAATGGTCAGGCCACTGGGGATGCTGGAATTCATGGAAAGTTCCTAATGACACTGGGAAAGCAAATCATAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

370

Amino Acids

42.02

Weight (kDa)

6.7

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccII	CGCG	1 cut(s)	540
AciI	CCGC	2 cut(s)	377, 540
AclWI	GGATC	3 cut(s)	27, 40, 650
AcoI	YGGCCR	2 cut(s)	204, 933
AcsI	RAATTY	1 cut(s)	1060
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	2 cut(s)	952, 982
AjnI	CCWGG	1 cut(s)	963
AluBI	AGCT	5 cut(s)	126, 199, 469, 549, 820
AluI	AGCT	5 cut(s)	126, 199, 469, 549, 820
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	53, 483
AlwI	GGATC	3 cut(s)	27, 40, 650
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	7 cut(s)	204, 219, 264, 390, 933, 993, 1042
ApeKI	GCWGC	2 cut(s)	402, 817
ApoI	RAATTY	1 cut(s)	1060
Asp700I	GAANNNNTTC	2 cut(s)	590, 977
AspS9I	GGNCC	1 cut(s)	994
BalI	TGGCCA	2 cut(s)	206, 935
BamHI	GGATCC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	84, 992
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	389, 829
BccI	CCATC	2 cut(s)	729, 1019
BceAI	ACGGC	2 cut(s)	405, 1008
BciT130I	CCWGG	1 cut(s)	965
BclI	TGATCA	3 cut(s)	243, 358, 382
BcoDI	GTCTC	2 cut(s)	53, 483
BfaI	CTAG	3 cut(s)	212, 345, 1016
BfrI	CTTAAG	1 cut(s)	827
BisI	GCNGC	2 cut(s)	403, 818
BlsI	GCNGC	2 cut(s)	404, 819
Bme1390I	CCNGG	1 cut(s)	965
BmgT120I	GGNCC	1 cut(s)	994
BmiI	GGNNCC	2 cut(s)	34, 189
BmrFI	CCNGG	1 cut(s)	965
BmrI	ACTGGG	2 cut(s)	1057, 1095
BmsI	GCATC	5 cut(s)	130, 358, 816, 936, 1043
BmuI	ACTGGG	2 cut(s)	1057, 1095
BoxI	GACNNNNGTC	1 cut(s)	902
BpiI	GAAGAC	2 cut(s)	84, 992
BpmI	CTGGAG	2 cut(s)	174, 947
Bpu10I	CCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	465, 580
BsaJI	CCNNGG	5 cut(s)	659, 759, 799, 936, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	2 cut(s)	429, 1010
Bse1I	ACTGG	5 cut(s)	406, 688, 974, 1052, 1090
Bse3DI	GCAATG	2 cut(s)	246, 717
BseBI	CCWGG	1 cut(s)	965
BseDI	CCNNGG	5 cut(s)	659, 759, 799, 936, 990
BseGI	GGATG	3 cut(s)	98, 784, 1058
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	2 cut(s)	246, 717
BseMII	CTCAG	2 cut(s)	404, 609
BseNI	ACTGG	5 cut(s)	406, 688, 974, 1052, 1090
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	389, 829
BseYI	CCCAGC	1 cut(s)	820
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	7 cut(s)	206, 221, 266, 392, 935, 995, 1044
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	3 cut(s)	430, 922, 1011
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	53, 483
BsmFI	GGGAC	1 cut(s)	777
BsnI	GGCC	7 cut(s)	206, 221, 266, 392, 935, 995, 1044
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	2 cut(s)	377, 540
BspANI	GGCC	7 cut(s)	206, 221, 266, 392, 935, 995, 1044
BspCNI	CTCAG	2 cut(s)	405, 610
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	34, 189
BspPI	GGATC	3 cut(s)	27, 40, 650
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	2 cut(s)	246, 717
BsrFI	RCCGGY	2 cut(s)	429, 1010
BsrI	ACTGG	5 cut(s)	406, 688, 974, 1052, 1090
BssAI	RCCGGY	2 cut(s)	429, 1010
BssECI	CCNNGG	5 cut(s)	659, 759, 799, 936, 990
BssMI	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	2 cut(s)	659, 936
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	965
Bst4CI	ACNGT	5 cut(s)	241, 446, 726, 904, 917
BstAFI	CTTAAG	1 cut(s)	827
BstDEI	CTNAG	4 cut(s)	413, 581, 602, 618
BstDSI	CCRYGG	3 cut(s)	659, 759, 990
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	3 cut(s)	98, 784, 1058
BstFNI	CGCG	1 cut(s)	540
BstKTI	GATC	7 cut(s)	35, 246, 361, 385, 400, 658, 704
BstMAI	GTCTC	2 cut(s)	53, 483
BstMBI	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	4 cut(s)	546, 823, 876, 1016
BstNI	CCWGG	1 cut(s)	965
BstNSI	RCATGY	1 cut(s)	478
BstPAI	GACNNNNGTC	1 cut(s)	902
BstSCI	CCNGG	1 cut(s)	963
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	389, 829
BstV2I	GAAGAC	2 cut(s)	84, 992
BstX2I	RGATCY	2 cut(s)	32, 655
BstYI	RGATCY	2 cut(s)	32, 655
BsuRI	GGCC	7 cut(s)	206, 221, 266, 392, 935, 995, 1044
BtgI	CCRYGG	3 cut(s)	659, 759, 990
BtsCI	GGATG	3 cut(s)	98, 784, 1058
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	9 cut(s)	451, 564, 681, 722, 865, 900, 900, 1045, 1083
CaiI	CAGNNNCTG	1 cut(s)	412
Cfr10I	RCCGGY	2 cut(s)	429, 1010
Cfr13I	GGNCC	1 cut(s)	994
Csp6I	GTAC	1 cut(s)	739
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	8 cut(s)	137, 301, 475, 660, 745, 908, 1065, 1107
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	4 cut(s)	413, 581, 602, 618
DpnI	GATC	7 cut(s)	34, 245, 360, 384, 399, 657, 703
DpnII	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
EaeI	YGGCCR	2 cut(s)	204, 933
Eco130I	CCWWGG	2 cut(s)	659, 936
Eco147I	AGGCCT	2 cut(s)	221, 266
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	1060
EcoRII	CCWGG	1 cut(s)	963
EcoT14I	CCWWGG	2 cut(s)	659, 936
ErhI	CCWWGG	2 cut(s)	659, 936
FaeI	CATG	8 cut(s)	140, 304, 478, 663, 748, 911, 1068, 1110
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	8 cut(s)	136, 300, 474, 659, 744, 907, 1064, 1106
FbaI	TGATCA	3 cut(s)	243, 358, 382
Fnu4HI	GCNGC	2 cut(s)	403, 818
FokI	GGATG	3 cut(s)	85, 791, 1065
Fsp4HI	GCNGC	2 cut(s)	403, 818
FspBI	CTAG	3 cut(s)	212, 345, 1016
GluI	GCNGC	2 cut(s)	403, 818
GsaI	CCCAGC	1 cut(s)	824
GsuI	CTGGAG	2 cut(s)	174, 947
HaeIII	GGCC	7 cut(s)	206, 221, 266, 392, 935, 995, 1044
HapII	CCGG	3 cut(s)	430, 922, 1011
Hin1II	CATG	8 cut(s)	140, 304, 478, 663, 748, 911, 1068, 1110
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	586
HpaII	CCGG	3 cut(s)	430, 922, 1011
Hpy188I	TCNGA	5 cut(s)	132, 387, 414, 701, 800
Hpy188III	TCNNGA	6 cut(s)	191, 319, 482, 493, 597, 982
HpyAV	CCTTC	2 cut(s)	742, 946
HpyCH4III	ACNGT	5 cut(s)	241, 446, 726, 904, 917
HpyCH4V	TGCA	1 cut(s)	722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	546, 823, 876, 1016
HpyF3I	CTNAG	4 cut(s)	413, 581, 602, 618
Hsp92II	CATG	8 cut(s)	140, 304, 478, 663, 748, 911, 1068, 1110
Ksp22I	TGATCA	3 cut(s)	243, 358, 382
Kzo9I	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
LmnI	GCTCC	2 cut(s)	193, 924
Lsp1109I	GCAGC	2 cut(s)	389, 829
LweI	GCATC	5 cut(s)	130, 358, 816, 936, 1043
MaeI	CTAG	3 cut(s)	212, 345, 1016
MaeIII	GTNAC	2 cut(s)	542, 895
MalI	GATC	7 cut(s)	34, 245, 360, 384, 399, 657, 703
MboI	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
MboII	GAAGA	4 cut(s)	84, 87, 519, 997
MflI	RGATCY	2 cut(s)	32, 655
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	2 cut(s)	206, 935
MluCI	AATT	1 cut(s)	1060
MluNI	TGGCCA	2 cut(s)	206, 935
MmeI	TCCRAC	1 cut(s)	504
Mox20I	TGGCCA	2 cut(s)	206, 935
MroXI	GAANNNNTTC	2 cut(s)	590, 977
MscI	TGGCCA	2 cut(s)	206, 935
MseI	TTAA	3 cut(s)	180, 828, 942
MslI	CAYNNNNRTG	3 cut(s)	299, 494, 641
Msp20I	TGGCCA	2 cut(s)	206, 935
MspA1I	CMGCKG	1 cut(s)	820
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	3 cut(s)	430, 922, 1011
MspR9I	CCNGG	1 cut(s)	965
MvaI	CCWGG	1 cut(s)	965
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	546, 823, 876, 1016
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
NlaIII	CATG	8 cut(s)	140, 304, 478, 663, 748, 911, 1068, 1110
NlaIV	GGNNCC	2 cut(s)	34, 189
NmuCI	GTSAC	1 cut(s)	895
NspI	RCATGY	1 cut(s)	478
PceI	AGGCCT	2 cut(s)	221, 266
PciI	ACATGT	1 cut(s)	474
PdmI	GAANNNNTTC	2 cut(s)	590, 977
PfeI	GAWTC	1 cut(s)	586
PfoI	TCCNGGA	1 cut(s)	963
PkrI	GCNGC	2 cut(s)	404, 819
Ple19I	CGATCG	1 cut(s)	400
PscI	ACATGT	1 cut(s)	474
PshAI	GACNNNNGTC	1 cut(s)	902
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	963
PspFI	CCCAGC	1 cut(s)	820
PspGI	CCWGG	1 cut(s)	963
PspN4I	GGNNCC	2 cut(s)	34, 189
PspPI	GGNCC	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	32, 655
PvuI	CGATCG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
RseI	CAYNNNNRTG	3 cut(s)	299, 494, 641
SaqAI	TTAA	3 cut(s)	180, 828, 942
SatI	GCNGC	2 cut(s)	403, 818
Sau3AI	GATC	7 cut(s)	32, 243, 358, 382, 397, 655, 701
Sau96I	GGNCC	1 cut(s)	994
ScrFI	CCNGG	1 cut(s)	965
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	5 cut(s)	130, 358, 816, 936, 1043
SmiMI	CAYNNNNRTG	3 cut(s)	299, 494, 641
SmlI	CTYRAG	3 cut(s)	480, 595, 827
SmoI	CTYRAG	3 cut(s)	480, 595, 827
Sse9I	AATT	1 cut(s)	1060
SseBI	AGGCCT	2 cut(s)	221, 266
SsiI	CCGC	2 cut(s)	377, 540
SspMI	CTAG	3 cut(s)	212, 345, 1016
StuI	AGGCCT	2 cut(s)	221, 266
StyD4I	CCNGG	1 cut(s)	963
StyI	CCWWGG	2 cut(s)	659, 936
TaaI	ACNGT	5 cut(s)	241, 446, 726, 904, 917
TaqI	TCGA	2 cut(s)	318, 704
TasI	AATT	1 cut(s)	1060
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	3 cut(s)	180, 828, 942
Tru9I	TTAA	3 cut(s)	180, 828, 942
TscAI	CASTG	9 cut(s)	451, 571, 688, 729, 865, 900, 907, 1052, 1090
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	2 cut(s)	402, 817
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	6 cut(s)	87, 304, 478, 541, 761, 1053
TspGWI	ACGGA	3 cut(s)	455, 575, 579
TspRI	CASTG	9 cut(s)	451, 571, 688, 729, 865, 900, 907, 1052, 1090
Vha464I	CTTAAG	1 cut(s)	827
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	1060
XceI	RCATGY	1 cut(s)	478
XmnI	GAANNNNTTC	2 cut(s)	590, 977
XspI	CTAG	3 cut(s)	212, 345, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.