Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Forward (+)

16048486 .. 16049516

Gene Structure 1031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCTCAAGATTTTATCAACATTATGTGGAGGAGAACTCTCTTTCTCAAAGAAATGCTTGAGCGAGGCTATAGTTTCATATTCACGGACATAGATGTGATGTGGCTAAGGAACCCCTTTCCAAGGCTAATTAGCTTCAACGAAAGCATCGATCTTCAAATCAGCACCGATAGCTTCAATGGTGATCAATTGTCTGAAGCAAACCCCATCAACACAGGTTTCTACATGGTGAGATCTAACAACAGAACAATCTTATTCGAAAAGTGGTATGCCCAGAAAAACTACTCAACCAAATTGAAAGCGCAGGATGTTTTAAATGGCATGATGAAGGAAGGTGTTTTCAGACAGTTGGGCCTCAGCGTGAGGTTTTTGGACACACGTTACTTCAGTGGCTTCTGTGAAGTTAGCAGGGACTTCAACGCTGTCACAACCGTTCATGCCAATTGCAAACGGACTATAGGTGCTAAGGTGGTTGATCCAACGGCTGTGGTTCACGATTGGAAGAGGTTCAAGAGCTTATCTAATTCCAATTCGACATCGACTTTGAAATGGACTAACCATGTAGCCTGTAATCGGTCCTGGAAGTGCAAAGTGACCTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

202

Amino Acids

23.4

Weight (kDa)

9.56

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	470
AcuI	CTGAAG	2 cut(s)	216, 370
AfiI	CCNNNNNNNGG	2 cut(s)	123, 573
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	7 cut(s)	139, 158, 178, 298, 418, 511, 547
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	3 cut(s)	135, 174, 516
AluI	AGCT	3 cut(s)	135, 174, 516
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	352, 576
AsuHPI	GGTGA	2 cut(s)	194, 241
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	576
BbvCI	CCTCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	1 cut(s)	580
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	604
BfmI	CTRYAG	2 cut(s)	70, 456
BglII	AGATCT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	352, 576
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
Bpu10I	CCTNAGC	3 cut(s)	107, 356, 465
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	122, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 573
BseBI	CCWGG	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	122, 597
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	123, 573
BseMII	CTCAG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	354
BshVI	ATCGAT	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	123, 573
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	151, 184, 233, 475
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	369
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	122, 597
BssMI	GATC	4 cut(s)	151, 184, 233, 475
BssT1I	CCWWGG	2 cut(s)	122, 597
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	348, 433
Bst6I	CTCTTC	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	107, 356, 465
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	4 cut(s)	154, 187, 236, 478
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	151, 184, 233, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	2 cut(s)	70, 456
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	352, 576
ClaI	ATCGAT	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	4 cut(s)	226, 322, 437, 560
DdeI	CTNAG	3 cut(s)	107, 356, 465
DpnI	GATC	4 cut(s)	153, 186, 235, 477
DpnII	GATC	4 cut(s)	151, 184, 233, 475
DraI	TTTAAA	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	122, 597
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	216, 370
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	2 cut(s)	122, 597
ErhI	CCWWGG	2 cut(s)	122, 597
FaeI	CATG	4 cut(s)	229, 325, 440, 563
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	225, 321, 436, 559
FbaI	TGATCA	1 cut(s)	184
FokI	GGATG	1 cut(s)	320
FspBI	CTAG	1 cut(s)	604
GlaI	GCGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	354
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	229, 325, 440, 563
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HphI	GGTGA	2 cut(s)	194, 241
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	196, 344
Hpy188III	TCNNGA	3 cut(s)	8, 494, 511
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	322, 326
HpyCH4III	ACNGT	2 cut(s)	348, 433
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	447, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	3 cut(s)	107, 356, 465
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	4 cut(s)	229, 325, 440, 563
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	151, 184, 233, 475
LpnPI	CCDG	7 cut(s)	201, 287, 290, 394, 565, 580, 592
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	3 cut(s)	380, 424, 592
MalI	GATC	4 cut(s)	153, 186, 235, 477
MboI	GATC	4 cut(s)	151, 184, 233, 475
MboII	GAAGA	2 cut(s)	146, 514
MfeI	CAATTG	2 cut(s)	188, 442
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	6 cut(s)	129, 188, 293, 442, 523, 529
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	5 cut(s)	24, 59, 357, 365, 498
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	580
MunI	CAATTG	2 cut(s)	188, 442
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	4 cut(s)	151, 184, 233, 475
NlaIII	CATG	4 cut(s)	229, 325, 440, 563
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	424, 592
NspV	TTCGAA	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	352, 576
PsuI	RGATCY	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	314
Sau3AI	GATC	4 cut(s)	151, 184, 233, 475
Sau96I	GGNCC	2 cut(s)	352, 576
ScrFI	CCNGG	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	2 cut(s)	70, 456
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	6, 59
SmoI	CTYRAG	2 cut(s)	6, 59
Sse9I	AATT	6 cut(s)	129, 188, 293, 442, 523, 529
SspMI	CTAG	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	2 cut(s)	122, 597
TaaI	ACNGT	2 cut(s)	348, 433
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	4 cut(s)	150, 258, 533, 539
TaqII	GACCGA	1 cut(s)	564
TasI	AATT	6 cut(s)	129, 188, 293, 442, 523, 529
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	424, 592
Tsp45I	GTSAC	2 cut(s)	424, 592
TspDTI	ATGAA	3 cut(s)	67, 341, 425
TspGWI	ACGGA	2 cut(s)	101, 466
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.