Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003175.1

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Forward (+)

76 .. 1810

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggaggtcgatggagatggagatgggggtggagtaccggacactgatgtgatgtggctaaggaacccattcacaaagctaagtaaaaatgaaactgaggatttacaaataagcactgacatgttctttggagatccatggaacacaacacagttaatcaataccggcttctactacatcaaatccaacaacaagaccattgcactgtttgatagatggtacaccttgaaggataatgccaccggaattaaagaacaggatgtattactaaacctaatccgagatggtattgttccagagttaggtcttagagtcaggttcttggatactgtatatttcagtggtttttgccagaatagcagggatgttagggaagtcagtactgtccattccaattgttgccggagtattgttgcgaaagtacaagatttgaaggctgttctccgggattggaagaagttcaagaaagtagtgtcacatacgaggagagttaatcttaatctgacggccgagagattccagtggaccggccattggggatgttggaactcatggaaggttccggcaaacagagccaaagcaactcataagtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

198

Amino Acids

22.82

Weight (kDa)

9.04

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	2 cut(s)	507, 529
AfaI	GTAC	4 cut(s)	36, 221, 382, 423
AfiI	CCNNNNNNNGG	2 cut(s)	302, 534
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	229, 433, 463
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	507, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	2 cut(s)	68, 458
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	525
BccI	CCATC	5 cut(s)	5, 11, 17, 210, 278
BceAI	ACGGC	1 cut(s)	522
BciVI	GTATCC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	319
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	525
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	65, 561
BmrFI	CCNGG	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	2 cut(s)	37, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 534
Bse118I	RCCGGY	2 cut(s)	164, 527
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	3 cut(s)	265, 370, 545
BseLI	CCNNNNNNNGG	2 cut(s)	302, 534
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	499
BseX3I	CGGCCG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	509, 531
BsiEI	CGRYCG	1 cut(s)	510
BsiSI	CCGG	7 cut(s)	38, 165, 243, 403, 445, 528, 563
BslI	CCNNNNNNNGG	2 cut(s)	302, 534
BsnI	GGCC	2 cut(s)	509, 531
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	137
BspANI	GGCC	2 cut(s)	509, 531
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	65, 561
BspPI	GGATC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	164, 527
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	2 cut(s)	164, 527
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	4 cut(s)	153, 207, 331, 385
BstDEI	CTNAG	4 cut(s)	59, 80, 96, 308
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	265, 370, 545
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 572
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	509, 531
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	265, 370, 545
BtsIMutI	CAGTG	5 cut(s)	42, 114, 203, 346, 527
Cfr10I	RCCGGY	2 cut(s)	164, 527
Cfr13I	GGNCC	1 cut(s)	525
Csp6I	GTAC	4 cut(s)	35, 220, 381, 422
CviAII	CATG	3 cut(s)	121, 138, 552
CviJI	RGCY	7 cut(s)	58, 79, 168, 437, 509, 531, 575
CviKI_1	RGCY	7 cut(s)	58, 79, 168, 437, 509, 531, 575
CviQI	GTAC	4 cut(s)	35, 220, 381, 422
DdeI	CTNAG	4 cut(s)	59, 80, 96, 308
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	507, 529
EagI	CGGCCG	1 cut(s)	507
EclXI	CGGCCG	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	525
Eco52I	CGGCCG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	124, 141, 555
FaiI	YATR	6 cut(s)	122, 139, 334, 480, 553, 588
FatI	CATG	3 cut(s)	120, 137, 551
FokI	GGATG	3 cut(s)	272, 377, 552
HaeIII	GGCC	2 cut(s)	509, 531
HapII	CCGG	7 cut(s)	38, 165, 243, 403, 445, 528, 563
Hin1II	CATG	3 cut(s)	124, 141, 555
HinfI	GANTC	2 cut(s)	312, 516
HpaII	CCGG	7 cut(s)	38, 165, 243, 403, 445, 528, 563
Hpy166II	GTNNAC	2 cut(s)	222, 525
Hpy188I	TCNGA	2 cut(s)	281, 504
Hpy188III	TCNNGA	2 cut(s)	296, 463
Hpy8I	GTNNAC	2 cut(s)	222, 525
HpyAV	CCTTC	3 cut(s)	223, 427, 550
HpyCH4III	ACNGT	4 cut(s)	153, 207, 331, 385
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 572
HpyF3I	CTNAG	4 cut(s)	59, 80, 96, 308
Hsp92II	CATG	3 cut(s)	124, 141, 555
Kzo9I	GATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	466
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	2 cut(s)	246, 394
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	210, 524
MnlI	CCTC	2 cut(s)	91, 477
MroXI	GAANNNNTTC	2 cut(s)	68, 458
MseI	TTAA	4 cut(s)	155, 249, 492, 498
MslI	CAYNNNNRTG	2 cut(s)	47, 119
MspI	CCGG	7 cut(s)	38, 165, 243, 403, 445, 528, 563
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	357, 572
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	124, 141, 555
NlaIV	GGNNCC	2 cut(s)	65, 561
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	474
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	47
PciI	ACATGT	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	68, 458
PfeI	GAWTC	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	444
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PscI	ACATGT	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	65, 561
PspPI	GGNCC	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	4 cut(s)	36, 221, 382, 423
RsaNI	GTAC	4 cut(s)	35, 220, 381, 422
RseI	CAYNNNNRTG	2 cut(s)	47, 119
SaqAI	TTAA	4 cut(s)	155, 249, 492, 498
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	525
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	446
SetI	ASST	7 cut(s)	9, 81, 227, 276, 307, 320, 561
SinI	GGWCC	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	47, 119
Sse9I	AATT	2 cut(s)	246, 394
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	4 cut(s)	153, 207, 331, 385
TaqI	TCGA	1 cut(s)	9
TasI	AATT	2 cut(s)	246, 394
TatI	WGTACW	2 cut(s)	380, 421
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	4 cut(s)	155, 249, 492, 498
Tru9I	TTAA	4 cut(s)	155, 249, 492, 498
TscAI	CASTG	5 cut(s)	49, 121, 210, 346, 527
TseFI	GTSAC	1 cut(s)	474
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	5 cut(s)	49, 121, 210, 346, 527
VpaK11BI	GGWCC	1 cut(s)	525
XceI	RCATGY	1 cut(s)	124
XmnI	GAANNNNTTC	2 cut(s)	68, 458
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.