AT1G28700

BEST Arabidopsis thaliana protein match is Nucleotide-diphospho-sugar transferase family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002782
Physical Location & Seq
Reverse (-)
10083500 .. 10085030
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28700.1

Sequence Viewer

Length: 1017 bp
ATGACTTCCTACAATAACTCCTCCGGCAGTCTCGCCCTGGCCGTTGCTCTTCTATTTGCCGGCGCCTTATATATCTACTTCTCATCACGTTCAGCTTCTGATCCCATCTCCGGTCTCCTACAAAATGTCAACACTAGATTGATACAGTATCCGGTGGACGAGCTAGAGACGGTGCTGGACAAGGCGTCGACAGGGAACAACAAGACGGTGATAATAGCAATGGTGAACAAAGCTTACGTGGAGGAGGATGGAGGAGGGAGGACGATGCTGGATCTGTTTTTGGAGAGTTTTTGGGAAGGAGAGGGGACACGCCCGCTTCTTAACCATCTGATGGTGGTTGCAGCGGATCAGACGGCCTACGATCGCTGCCTCTTCAGGAGGCTCCATTGCTACAAGATGGATACGGAAGGGGTTGACTTGGAGGGAGAGAAAGTATACATGTCAAAAGATTTCATAGAGATGATGTGGAGGAGGACTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGCTTGGATATGCATATAAGCGTGGACAGAAATAACGTGAGAGGACAATTGATCAACACGGGATTCTACCATGCCCGGTCCAACAACAAGACCATCTCCCTCTTCCAGAAATGGTACGACATGAGGCTCAAGTCTTTGGGCATGAAGGAACAAGACGTCCTCAAGAATCTCCTAGACTCTGGCTTCTTTAACCAGCTTGGTCTCAACGTTGGCTTCCTCAGTACGGCCGAATTCAGCGGTTTCTGCCAAGACAGCCCTGACATGGGGGCTGTCACAACCGTCCACGCCAACTGTTGCGTCCACATCCCTGCTAAGATCTCTGATCTCAGTCTTGCTCTTCGTGACTGGAAACGCTACAAAGCCTCCCGTGTCAACAGCAGGTGGAGCCCCCATGTTGAGTGCAGGCGTTCATGGAAGGACGTTCATTATGTCCCCAAGCTCTGA

Protein Analysis

338

Amino Acids

38.54

Weight (kDa)

8.14

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 106 - 300 2.4e-59 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 942
AatII GACGTC 2 cut(s) 495, 732
Acc36I ACCTGC 1 cut(s) 942
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 331
AccI GTMKAC 2 cut(s) 188, 435
AccII CGCG 1 cut(s) 504
AciI CCGC 5 cut(s) 314, 344, 502, 504, 810
AclI AACGTT 1 cut(s) 780
AclWI GGATC 3 cut(s) 95, 279, 354
AcoI YGGCCR 2 cut(s) 39, 798
AcsI RAATTY 1 cut(s) 803
AcuI CTGAAG 1 cut(s) 358
AcyI GRCGYC 4 cut(s) 63, 185, 492, 729
AfaI GTAC 2 cut(s) 689, 796
AfiI CCNNNNNNNGG 6 cut(s) 110, 331, 561, 796, 835, 836
AflIII ACRYGT 1 cut(s) 438
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 36
AloI GAACNNNNNNTCC 2 cut(s) 714, 746
AluBI AGCT 6 cut(s) 95, 163, 233, 576, 769, 1012
AluI AGCT 6 cut(s) 95, 163, 233, 576, 769, 1012
Alw26I GTCTC 4 cut(s) 35, 119, 161, 779
AlwI GGATC 3 cut(s) 95, 279, 354
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 3 cut(s) 39, 354, 798
ApeKI GCWGC 2 cut(s) 341, 366
ApoI RAATTY 1 cut(s) 803
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 651
AsuC2I CCSGG 2 cut(s) 562, 649
AsuHPI GGTGA 2 cut(s) 220, 235
AvaII GGWCC 1 cut(s) 651
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 962
BbvCI CCTCAGC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 353, 353
BccI CCATC 6 cut(s) 113, 242, 325, 333, 391, 674
BceAI ACGGC 3 cut(s) 26, 369, 813
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 3 cut(s) 159, 394, 520
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 2 cut(s) 562, 649
BcoDI GTCTC 4 cut(s) 35, 119, 161, 779
BfaI CTAG 4 cut(s) 135, 164, 488, 746
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 942
BfuI GTATCC 3 cut(s) 159, 394, 520
BglII AGATCT 1 cut(s) 888
BisI GCNGC 4 cut(s) 342, 367, 502, 505
BlsI GCNGC 4 cut(s) 343, 368, 503, 506
Bme1390I CCNGG 3 cut(s) 38, 562, 649
Bme18I GGWCC 1 cut(s) 651
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 3 cut(s) 64, 383, 959
BmrFI CCNGG 3 cut(s) 38, 562, 649
BmsI GCATC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 460, 492
Bpu10I CCTNAGC 2 cut(s) 497, 545
BpuEI CTTGAG 2 cut(s) 686, 719
BpuMI CCSGG 2 cut(s) 562, 649
BsaAI YACGTR 1 cut(s) 238
BsaHI GRCGYC 4 cut(s) 63, 185, 492, 729
BsaI GGTCTC 2 cut(s) 119, 779
BsaJI CCNNGG 2 cut(s) 36, 502
BsaWI WCCGGW 2 cut(s) 110, 151
BsaXI ACNNNNNCTCC 5 cut(s) 32, 417, 447, 920, 950
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 331, 561, 796, 835, 836
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 923
Bse3DI GCAATG 2 cut(s) 225, 385
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 36, 502
BseGI GGATG 2 cut(s) 253, 876
BseLI CCNNNNNNNGG 6 cut(s) 110, 331, 561, 796, 835, 836
BseMI GCAATG 2 cut(s) 225, 385
BseMII CTCAG 3 cut(s) 511, 805, 913
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 4 cut(s) 10, 257, 267, 484
BseX3I CGGCCG 1 cut(s) 798
BseXI GCAGC 2 cut(s) 353, 353
BsgI GTGCAG 1 cut(s) 994
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 2 cut(s) 364, 801
BshFI GGCC 3 cut(s) 41, 356, 800
BshNI GGYRCC 1 cut(s) 62
BsiEI CGRYCG 2 cut(s) 364, 801
BsiSI CCGG 6 cut(s) 24, 60, 111, 152, 562, 649
BslFI GGGAC 4 cut(s) 319, 537, 544, 989
BslI CCNNNNNNNGG 6 cut(s) 110, 331, 561, 796, 835, 836
BsmAI GTCTC 4 cut(s) 35, 119, 161, 779
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 4 cut(s) 319, 537, 544, 989
BsnI GGCC 3 cut(s) 41, 356, 800
Bso31I GGTCTC 2 cut(s) 119, 779
Bsp1286I GDGCHC 1 cut(s) 962
Bsp143I GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
BspACI CCGC 5 cut(s) 314, 344, 502, 504, 810
BspANI GGCC 3 cut(s) 41, 356, 800
BspCNI CTCAG 3 cut(s) 510, 804, 912
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 64, 383, 959
BspMI ACCTGC 1 cut(s) 942
BspPI GGATC 3 cut(s) 95, 279, 354
BspQI GCTCTTC 2 cut(s) 54, 915
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 2 cut(s) 119, 779
BsrDI GCAATG 2 cut(s) 225, 385
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 923
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 36, 502
BssMI GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
BssNAI GTATAC 1 cut(s) 436
BssNI GRCGYC 4 cut(s) 63, 185, 492, 729
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 5 cut(s) 147, 172, 208, 853, 866
Bst6I CTCTTC 4 cut(s) 54, 377, 680, 915
BstACI GRCGYC 4 cut(s) 63, 185, 492, 729
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 4 cut(s) 61, 314, 482, 977
BstDEI CTNAG 5 cut(s) 497, 545, 791, 885, 899
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 253, 876
BstFNI CGCG 1 cut(s) 504
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 7 cut(s) 103, 274, 349, 364, 627, 891, 898
BstMAI GTCTC 4 cut(s) 35, 119, 161, 779
BstMBI GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
BstMCI CGRYCG 2 cut(s) 364, 801
BstMWI GCNNNNNNNGC 3 cut(s) 816, 825, 957
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 3 cut(s) 36, 560, 647
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 353, 353
BstX2I RGATCY 2 cut(s) 271, 888
BstYI RGATCY 2 cut(s) 271, 888
BstZ17I GTATAC 1 cut(s) 436
BstZI CGGCCG 1 cut(s) 798
BsuI GTATCC 3 cut(s) 159, 394, 520
BsuRI GGCC 3 cut(s) 41, 356, 800
BtgI CCRYGG 1 cut(s) 502
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 2 cut(s) 253, 876
BveI ACCTGC 1 cut(s) 942
Cac8I GCNNGC 4 cut(s) 61, 314, 482, 977
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 651
Cfr42I CCGCGG 1 cut(s) 505
CseI GACGC 2 cut(s) 174, 859
Csp6I GTAC 2 cut(s) 688, 795
CviAII CATG 7 cut(s) 439, 644, 694, 715, 835, 965, 984
CviQI GTAC 2 cut(s) 688, 795
DdeI CTNAG 5 cut(s) 497, 545, 791, 885, 899
DinI GGCGCC 1 cut(s) 64
DpnI GATC 7 cut(s) 102, 273, 348, 363, 626, 890, 897
DpnII GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 2 cut(s) 39, 798
EagI CGGCCG 1 cut(s) 798
Eam1104I CTCTTC 4 cut(s) 54, 377, 680, 915
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 4 cut(s) 54, 377, 680, 915
EclXI CGGCCG 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 962
Eco31I GGTCTC 2 cut(s) 119, 779
Eco47I GGWCC 1 cut(s) 651
Eco52I CGGCCG 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 962
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 7 cut(s) 442, 647, 697, 718, 838, 968, 987
FaqI GGGAC 4 cut(s) 319, 537, 544, 989
FatI CATG 7 cut(s) 438, 643, 693, 714, 834, 964, 983
FauI CCCGC 1 cut(s) 321
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 2 cut(s) 188, 435
Fnu4HI GCNGC 4 cut(s) 342, 367, 502, 505
FokI GGATG 2 cut(s) 260, 863
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 4 cut(s) 342, 367, 502, 505
FspBI CTAG 4 cut(s) 135, 164, 488, 746
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 342, 367, 502, 505
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 3 cut(s) 41, 356, 800
HapII CCGG 6 cut(s) 24, 60, 111, 152, 562, 649
HgaI GACGC 2 cut(s) 174, 859
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 4 cut(s) 63, 185, 492, 729
Hin1II CATG 7 cut(s) 442, 647, 697, 718, 838, 968, 987
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 4 cut(s) 130, 189, 415, 946
HindII GTYRAC 4 cut(s) 130, 189, 415, 946
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 5 cut(s) 475, 550, 636, 739, 749
HpaII CCGG 6 cut(s) 24, 60, 111, 152, 562, 649
HphI GGTGA 2 cut(s) 220, 235
Hpy188I TCNGA 5 cut(s) 100, 330, 351, 895, 1016
Hpy188III TCNNGA 4 cut(s) 376, 679, 736, 914
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 4 cut(s) 290, 401, 712, 982
HpyCH4III ACNGT 5 cut(s) 147, 172, 208, 853, 866
HpyCH4IV ACGT 9 cut(s) 88, 237, 492, 534, 570, 609, 729, 780, 993
HpyCH4V TGCA 3 cut(s) 341, 586, 975
HpyF10VI GCNNNNNNNGC 3 cut(s) 816, 825, 957
HpyF3I CTNAG 5 cut(s) 497, 545, 791, 885, 899
HpySE526I ACGT 9 cut(s) 88, 237, 492, 534, 570, 609, 729, 780, 993
Hsp92I GRCGYC 4 cut(s) 63, 185, 492, 729
Hsp92II CATG 7 cut(s) 442, 647, 697, 718, 838, 968, 987
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 624
KspI CCGCGG 1 cut(s) 505
Kzo9I GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
LguI GCTCTTC 2 cut(s) 54, 915
LmnI GCTCC 3 cut(s) 387, 489, 957
Lsp1109I GCAGC 2 cut(s) 353, 353
LweI GCATC 1 cut(s) 255
MaeI CTAG 4 cut(s) 135, 164, 488, 746
MaeII ACGT 9 cut(s) 88, 237, 492, 534, 570, 609, 729, 780, 993
MaeIII GTNAC 2 cut(s) 844, 914
MalI GATC 7 cut(s) 102, 273, 348, 363, 626, 890, 897
MboI GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
MboII GAAGA 4 cut(s) 41, 364, 667, 902
MfeI CAATTG 1 cut(s) 620
MflI RGATCY 2 cut(s) 271, 888
MhlI GDGCHC 1 cut(s) 962
MluCI AATT 2 cut(s) 620, 803
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 3 cut(s) 469, 559, 743
MmeI TCCRAC 1 cut(s) 678
Mph1103I ATGCAT 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 2 cut(s) 321, 762
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 3 cut(s) 344, 504, 810
MspI CCGG 6 cut(s) 24, 60, 111, 152, 562, 649
MspR9I CCNGG 3 cut(s) 38, 562, 649
MunI CAATTG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 3 cut(s) 816, 825, 957
NaeI GCCGGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 2 cut(s) 562, 649
NdeII GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 7 cut(s) 442, 647, 697, 718, 838, 968, 987
NlaIV GGNNCC 3 cut(s) 64, 383, 959
NmuCI GTSAC 2 cut(s) 844, 914
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 942
PciI ACATGT 1 cut(s) 438
PciSI GCTCTTC 2 cut(s) 54, 915
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 636, 739
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 4 cut(s) 343, 368, 503, 506
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 3 cut(s) 469, 558, 743
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 3 cut(s) 469, 558, 743
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 64, 383, 959
PspPI GGNCC 1 cut(s) 651
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 271, 888
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 2 cut(s) 689, 796
RsaNI GTAC 2 cut(s) 688, 795
RseI CAYNNNNRTG 1 cut(s) 458
SacII CCGCGG 1 cut(s) 505
SalI GTCGAC 1 cut(s) 187
SapI GCTCTTC 2 cut(s) 54, 915
SaqAI TTAA 2 cut(s) 321, 762
SatI GCNGC 4 cut(s) 342, 367, 502, 505
Sau3AI GATC 7 cut(s) 100, 271, 346, 361, 624, 888, 895
Sau96I GGNCC 1 cut(s) 651
SchI GAGTC 3 cut(s) 469, 559, 743
ScrFI CCNGG 3 cut(s) 38, 562, 649
SduI GDGCHC 1 cut(s) 962
SfaNI GCATC 1 cut(s) 255
SfoI GGCGCC 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 505
SgrBI CCGCGG 1 cut(s) 505
SinI GGWCC 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 701, 734
SmoI CTYRAG 2 cut(s) 701, 734
Sse9I AATT 2 cut(s) 620, 803
SsiI CCGC 5 cut(s) 314, 344, 502, 504, 810
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 4 cut(s) 135, 164, 488, 746
StyD4I CCNGG 3 cut(s) 36, 560, 647
TaaI ACNGT 5 cut(s) 147, 172, 208, 853, 866
TaiI ACGT 9 cut(s) 91, 240, 495, 537, 573, 612, 732, 783, 996
TaqI TCGA 1 cut(s) 188
TasI AATT 2 cut(s) 620, 803
TauI GCSGC 2 cut(s) 504, 507
TfiI GAWTC 2 cut(s) 636, 739
Tru1I TTAA 2 cut(s) 321, 762
Tru9I TTAA 2 cut(s) 321, 762
TseFI GTSAC 2 cut(s) 844, 914
TseI GCWGC 2 cut(s) 341, 366
Tsp45I GTSAC 2 cut(s) 844, 914
TspDTI ATGAA 4 cut(s) 442, 731, 972, 986
TspGWI ACGGA 3 cut(s) 419, 539, 545
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 1 cut(s) 803
XceI RCATGY 1 cut(s) 442
XmiI GTMKAC 2 cut(s) 188, 435
XspI CTAG 4 cut(s) 135, 164, 488, 746
ZraI GACGTC 2 cut(s) 493, 730
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.