Rh1DG378800

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002782
Physical Location & Seq
Reverse (-)
60095210 .. 60097510
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG378800.1

Sequence Viewer

Length: 1029 bp
ATGGAAAGTAAACAGTTTGCAAAATTCTTCCTTCTGATATTTGCTGGTTTAGTATTGTTCGTGTTCAATCAAAGCTCGAACGGATCCAATCCATTCTTTCTTGCCCGCCAAATATGTCAAACCTCTAAACAGGTCAACGACACGAGCAGGAGCGATGCTCTTGAATCAGCTTTGTCTGAGGCTTCCATGGAAAACAAGACTGTGATCATTGCGATTATAAACAAAGCCTATGTAGAAGGCGATAAGTCCATGCTTGACTTGTTTTTAGACGGTTTTTGGCTTGGAGAAGACACAAGGAACTTGATTAATCACCTACTTCTTGTGGCGGCCGATCAAACATCCTTTGAACGCTGCAAGTTTCTCCATCTTCACTGCTACAAGCTCGAGACGGCCGGAGTCGATTTTGATGCTGAGGAAGTGTACATGTCTCAAGATTTTATCAAGATGATGTGGAGGAGAACTCTCTTTCTCGGAGAGACGCTCAAGAAAGGCTATAGTTTCATATTCACGGATGCGGATGTAATGTGGCTACGGAATCCATTTCCAAGGCTCAAGTACAACCAAAGCATAGATAACTTAGATCTCCAGATCAGTACTGATAAATTCAATGGCGATCAGTGGTCTGAAGCCAACCCCATCAACTCAGGCTTCTACATTGTGCGGTCCAACAACAGAACAATCTCATTATTCGACAAGTGGTACGCCAGGAAAAACGACTCCGCCGGATTGAAAGAGCAGGATGTTCTAAACAACATGATCCGGGAAGGTGTTTTCAAGGAGTTAGGCATCAGAGTGAGGTTTTTGGACACCCTTTATTTCAGTGGCTTTTGCGAAGTCAGCAGGGACTTCAAAGCTGTCACAACCGTTCATGCTAACTGTTGCCGCACAATAAGCGCCAAGGTGGTGGATCTGACGGCTGTGATTCACGACTGGAAGAGGTTCAAGAGCTTAACTGACTCAAATCAGATATCGATTTTGCAATGGACTAACCATGTAGCCTGCCATAACTCCTGGAGACGTCACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

342

Amino Acids

39.62

Weight (kDa)

7.61

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 101 - 303 4.4e-64 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AatII GACGTC 1 cut(s) 1021
AciI CCGC 6 cut(s) 106, 326, 515, 661, 720, 883
AclWI GGATC 4 cut(s) 78, 91, 751, 915
AcoI YGGCCR 2 cut(s) 327, 390
AcsI RAATTY 2 cut(s) 23, 602
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 1018
AfaI GTAC 4 cut(s) 422, 557, 595, 701
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 8 cut(s) 67, 164, 347, 607, 730, 775, 850, 943
AjnI CCWGG 2 cut(s) 704, 1010
AluBI AGCT 5 cut(s) 75, 170, 382, 854, 948
AluI AGCT 5 cut(s) 75, 170, 382, 854, 948
Alw26I GTCTC 4 cut(s) 380, 432, 470, 1009
AlwI GGATC 4 cut(s) 78, 91, 751, 915
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 2 cut(s) 327, 390
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 23, 602
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 1 cut(s) 896
AspS9I GGNCC 1 cut(s) 663
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 302, 1013
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 1 cut(s) 663
BamHI GGATCC 1 cut(s) 83
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 338
BccI CCATC 2 cut(s) 372, 644
BceAI ACGGC 2 cut(s) 405, 930
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 706, 1012
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 4 cut(s) 380, 432, 470, 1009
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 897
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 327, 352, 883
BlsI GCNGC 3 cut(s) 328, 353, 884
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 3 cut(s) 706, 761, 1012
Bme18I GGWCC 1 cut(s) 663
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 663
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 706, 761, 1012
BmsI GCATC 4 cut(s) 145, 397, 502, 795
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 6 cut(s) 142, 174, 445, 477, 465, 497
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 3 cut(s) 414, 467, 536
BpuMI CCSGG 1 cut(s) 761
Bsa29I ATCGAT 1 cut(s) 971
BsaHI GRCGYC 1 cut(s) 1018
BsaJI CCNNGG 3 cut(s) 186, 545, 897
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 2 cut(s) 207, 986
BseBI CCWGG 2 cut(s) 706, 1012
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 3 cut(s) 186, 545, 897
BseGI GGATG 4 cut(s) 338, 517, 523, 745
BseMI GCAATG 2 cut(s) 207, 986
BseMII CTCAG 3 cut(s) 168, 402, 657
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 1 cut(s) 469
BseX3I CGGCCG 2 cut(s) 327, 390
BseXI GCAGC 1 cut(s) 338
Bsh1285I CGRYCG 2 cut(s) 330, 393
BshFI GGCC 2 cut(s) 329, 392
BshVI ATCGAT 1 cut(s) 971
BsiEI CGRYCG 2 cut(s) 330, 393
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 3 cut(s) 393, 723, 760
BslFI GGGAC 1 cut(s) 857
BsmAI GTCTC 4 cut(s) 380, 432, 470, 1009
BsmBI CGTCTC 3 cut(s) 380, 470, 1009
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 2 cut(s) 329, 392
BsoBI CYCGRG 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 6 cut(s) 106, 326, 515, 661, 720, 883
BspANI GGCC 2 cut(s) 329, 392
BspCNI CTCAG 3 cut(s) 169, 403, 656
BspDI ATCGAT 1 cut(s) 971
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 4 cut(s) 78, 91, 751, 915
BsrDI GCAATG 2 cut(s) 207, 986
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 3 cut(s) 186, 545, 897
BssMI GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
BssNI GRCGYC 1 cut(s) 1018
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 3 cut(s) 186, 545, 897
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 706, 1012
Bst4CI ACNGT 6 cut(s) 15, 202, 272, 865, 878, 1025
Bst6I CTCTTC 1 cut(s) 929
BstACI GRCGYC 1 cut(s) 1018
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 106, 1000
BstDEI CTNAG 4 cut(s) 177, 411, 577, 643
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 4 cut(s) 338, 517, 523, 745
BstH2I RGCGCY 1 cut(s) 897
BstHHI GCGC 1 cut(s) 896
BstKTI GATC 8 cut(s) 86, 207, 334, 583, 591, 616, 759, 910
BstMAI GTCTC 4 cut(s) 380, 432, 470, 1009
BstMBI GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
BstMCI CGRYCG 2 cut(s) 330, 393
BstMWI GCNNNNNNNGC 2 cut(s) 837, 891
BstNI CCWGG 2 cut(s) 706, 1012
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 704, 759, 1010
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 3 cut(s) 83, 580, 907
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 3 cut(s) 83, 580, 907
BstZI CGGCCG 2 cut(s) 327, 390
Bsu15I ATCGAT 1 cut(s) 971
BsuRI GGCC 2 cut(s) 329, 392
BsuTUI ATCGAT 1 cut(s) 971
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 4 cut(s) 338, 517, 523, 745
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 370, 623, 826
Cac8I GCNNGC 2 cut(s) 106, 1000
CfoI GCGC 1 cut(s) 896
Cfr13I GGNCC 1 cut(s) 663
ClaI ATCGAT 1 cut(s) 971
CseI GACGC 1 cut(s) 487
Csp6I GTAC 4 cut(s) 421, 556, 594, 700
CviAII CATG 6 cut(s) 187, 250, 424, 754, 869, 992
CviQI GTAC 4 cut(s) 421, 556, 594, 700
DdeI CTNAG 4 cut(s) 177, 411, 577, 643
DpnI GATC 8 cut(s) 85, 206, 333, 582, 590, 615, 758, 909
DpnII GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
EaeI YGGCCR 2 cut(s) 327, 390
EagI CGGCCG 2 cut(s) 327, 390
Eam1104I CTCTTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 929
EciI GGCGGA 1 cut(s) 709
EclXI CGGCCG 2 cut(s) 327, 390
Eco130I CCWWGG 3 cut(s) 186, 545, 897
Eco32I GATATC 1 cut(s) 969
Eco47I GGWCC 1 cut(s) 663
Eco52I CGGCCG 2 cut(s) 327, 390
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 704, 1010
EcoRV GATATC 1 cut(s) 969
EcoT14I CCWWGG 3 cut(s) 186, 545, 897
ErhI CCWWGG 3 cut(s) 186, 545, 897
Esp3I CGTCTC 3 cut(s) 380, 470, 1009
FaeI CATG 6 cut(s) 190, 253, 427, 757, 872, 995
FaqI GGGAC 1 cut(s) 857
FatI CATG 6 cut(s) 186, 249, 423, 753, 868, 991
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 327, 352, 883
FokI GGATG 4 cut(s) 325, 524, 530, 752
Fsp4HI GCNGC 3 cut(s) 327, 352, 883
GlaI GCGC 1 cut(s) 895
GluI GCNGC 3 cut(s) 327, 352, 883
GsuI CTGGAG 1 cut(s) 569
HaeII RGCGCY 1 cut(s) 897
HaeIII GGCC 2 cut(s) 329, 392
HapII CCGG 3 cut(s) 393, 723, 760
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 896
Hin1I GRCGYC 1 cut(s) 1018
Hin1II CATG 6 cut(s) 190, 253, 427, 757, 872, 995
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 6 cut(s) 164, 396, 535, 716, 922, 956
HpaII CCGG 3 cut(s) 393, 723, 760
HphI GGTGA 2 cut(s) 302, 1013
Hpy166II GTNNAC 3 cut(s) 11, 136, 421
Hpy188I TCNGA 7 cut(s) 36, 178, 473, 625, 791, 912, 966
Hpy188III TCNNGA 8 cut(s) 161, 385, 431, 442, 484, 586, 926, 943
Hpy8I GTNNAC 3 cut(s) 11, 136, 421
HpyAV CCTTC 3 cut(s) 41, 230, 758
HpyCH4III ACNGT 6 cut(s) 15, 202, 272, 865, 878, 1025
HpyCH4IV ACGT 1 cut(s) 1018
HpyCH4V TGCA 3 cut(s) 20, 354, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 837, 891
HpyF3I CTNAG 4 cut(s) 177, 411, 577, 643
HpySE526I ACGT 1 cut(s) 1018
Hsp92I GRCGYC 1 cut(s) 1018
Hsp92II CATG 6 cut(s) 190, 253, 427, 757, 872, 995
HspAI GCGC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 4 cut(s) 145, 397, 502, 795
MaeII ACGT 1 cut(s) 1018
MaeIII GTNAC 2 cut(s) 856, 1019
MalI GATC 8 cut(s) 85, 206, 333, 582, 590, 615, 758, 909
MboI GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
MboII GAAGA 4 cut(s) 19, 299, 359, 946
MflI RGATCY 3 cut(s) 83, 580, 907
MluCI AATT 2 cut(s) 23, 602
MlyI GAGTC 3 cut(s) 405, 710, 950
MmeI TCCRAC 1 cut(s) 690
MnlI CCTC 6 cut(s) 133, 172, 406, 447, 789, 930
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 3 cut(s) 306, 950, 1027
MslI CAYNNNNRTG 1 cut(s) 791
MspI CCGG 3 cut(s) 393, 723, 760
MspR9I CCNGG 3 cut(s) 706, 761, 1012
MvaI CCWGG 2 cut(s) 706, 1012
MwoI GCNNNNNNNGC 2 cut(s) 837, 891
NciI CCSGG 1 cut(s) 761
NcoI CCATGG 1 cut(s) 186
NdeII GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
NlaIII CATG 6 cut(s) 190, 253, 427, 757, 872, 995
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 856, 1019
NspI RCATGY 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 383
PciI ACATGT 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 3 cut(s) 164, 535, 922
PfoI TCCNGGA 2 cut(s) 759, 1010
PkrI GCNGC 3 cut(s) 328, 353, 884
PleI GAGTC 3 cut(s) 404, 710, 950
PpsI GAGTC 3 cut(s) 404, 710, 950
PscI ACATGT 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 704, 1010
PspGI CCWGG 2 cut(s) 704, 1010
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 663
PsuI RGATCY 3 cut(s) 83, 580, 907
RsaI GTAC 4 cut(s) 422, 557, 595, 701
RsaNI GTAC 4 cut(s) 421, 556, 594, 700
RseI CAYNNNNRTG 1 cut(s) 791
SaqAI TTAA 3 cut(s) 306, 950, 1027
SatI GCNGC 3 cut(s) 327, 352, 883
Sau3AI GATC 8 cut(s) 83, 204, 331, 580, 588, 613, 756, 907
Sau96I GGNCC 1 cut(s) 663
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 3 cut(s) 405, 710, 950
ScrFI CCNGG 3 cut(s) 706, 761, 1012
SfaNI GCATC 4 cut(s) 145, 397, 502, 795
SfcI CTRYAG 1 cut(s) 493
Sfr274I CTCGAG 1 cut(s) 383
SinI GGWCC 1 cut(s) 663
SlaI CTCGAG 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 4 cut(s) 383, 429, 482, 551
SmoI CTYRAG 4 cut(s) 383, 429, 482, 551
Sse9I AATT 2 cut(s) 23, 602
SsiI CCGC 6 cut(s) 106, 326, 515, 661, 720, 883
StyD4I CCNGG 3 cut(s) 704, 759, 1010
StyI CCWWGG 3 cut(s) 186, 545, 897
TaaI ACNGT 6 cut(s) 15, 202, 272, 865, 878, 1025
TaiI ACGT 1 cut(s) 1021
TaqI TCGA 5 cut(s) 77, 384, 399, 690, 971
TasI AATT 2 cut(s) 23, 602
TatI WGTACW 3 cut(s) 420, 555, 593
TauI GCSGC 2 cut(s) 329, 885
TfiI GAWTC 3 cut(s) 164, 535, 922
Tru1I TTAA 3 cut(s) 306, 950, 1027
Tru9I TTAA 3 cut(s) 306, 950, 1027
TscAI CASTG 3 cut(s) 377, 623, 826
TseFI GTSAC 2 cut(s) 856, 1019
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 2 cut(s) 856, 1019
TspDTI ATGAA 2 cut(s) 490, 857
TspGWI ACGGA 3 cut(s) 96, 524, 547
TspRI CASTG 3 cut(s) 377, 623, 826
VpaK11BI GGWCC 1 cut(s) 663
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 2 cut(s) 23, 602
XceI RCATGY 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 938
ZraI GACGTC 1 cut(s) 1019
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.