pycom07g21600

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002782
Physical Location & Seq
Reverse (-)
23264796 .. 23265842
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21600.1

Sequence Viewer

Length: 852 bp
ATGGCAAACAAGACTCTGATAATTGCAATTGTAAATAAGGCCTACGTAGAAGGAGATAAGCCAATGCTTGATTTGTTTTTAGATGGTTTCTGGCTTGGAGAAGACACAAGAGGCTTGATTTCTCACCTACTTCTTGTTGCGGTCGACCAAACATCTTTCGAACGTTGTAGGTTTCTCCACCTTCACTGCTACAAACTCGAAGCAGATGATCACGCCAATTTTGAGGCTGAGAAACTCTACATGTCACAGGAATTTATTAAGATGATGTGGAGGAGAACTCTCTTCCTCAAAGATTTGCTCAAGCGGGGCTACAGTTTCGTATTCACGGACATAGATGTGATGTGGCTAAGGGATCCATTTCCAAGGCTAAATAGCTTCAATGAGAGCATGGATCTTCAAATCAGTGCTGATAAGTTCAATGGGGATCAATGGTCTGAATCCAACCCCATCAACACAGGCTTTTACATGGTCAGATCCAACAACCGAACAATTTCGTTATTTGAAAAGTGGTACGACAGGAAGAATAACTCCACCGGAGTGAAAGAGCAGGATGTTTTAGACAGCATGATGCATGAAGGTGTTTTCAGAGAATTAGGCCTCAGTGTGAAATTTTTAGACACACTTTATTTCAGTGGCTTCTGTGAAGTCAGCAAGGACTTCAAAGCTGTCACGACGATTCATGCCAATTGCTGCCGAACTATAAGCGCCAAGGTGGCTGATCTGACGGCGGTGATTCATGATTGGAAGAAGTTCGAGATCTTATCGAATTCGAACCAGACATCGAGTTTGAAATGGACTAACCATGTGAACTGTGAGGGTTCCTGGAAAGATTTCAATGTGACATTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

284

Amino Acids

32.92

Weight (kDa)

5.92

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 39 - 241 3.5e-64 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 3 cut(s) 140, 304, 728
AclI AACGTT 1 cut(s) 163
AclWI GGATC 5 cut(s) 347, 360, 399, 432, 468
AcsI RAATTY 3 cut(s) 251, 608, 766
AfaI GTAC 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 7 cut(s) 379, 398, 418, 503, 661, 790, 835
AjnI CCWGG 1 cut(s) 821
AleI CACNNNNGTG 1 cut(s) 536
AluBI AGCT 2 cut(s) 375, 665
AluI AGCT 2 cut(s) 375, 665
AlwI GGATC 5 cut(s) 347, 360, 399, 432, 468
AoxI GGCC 2 cut(s) 39, 595
ApeKI GCWGC 1 cut(s) 690
ApoI RAATTY 3 cut(s) 251, 608, 766
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
Asp700I GAANNNNTTC 3 cut(s) 490, 749, 830
AspLEI GCGC 1 cut(s) 707
AsuHPI GGTGA 2 cut(s) 116, 742
AsuII TTCGAA 2 cut(s) 159, 770
BamHI GGATCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 677
BccI CCATC 2 cut(s) 77, 455
BceAI ACGGC 1 cut(s) 741
BciT130I CCWGG 1 cut(s) 823
BclI TGATCA 1 cut(s) 208
BfaI CTAG 1 cut(s) 850
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 708
BglI GCCNNNNNGGC 1 cut(s) 713
BglII AGATCT 1 cut(s) 756
BisI GCNGC 1 cut(s) 691
BlsI GCNGC 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 823
BmiI GGNNCC 2 cut(s) 354, 820
BmrFI CCNGG 1 cut(s) 823
BmsI GCATC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 262, 294
Bpu10I CCTNAGC 1 cut(s) 347
Bpu14I TTCGAA 2 cut(s) 159, 770
BpuEI CTTGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 362, 708
BsaWI WCCGGW 1 cut(s) 533
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 2 cut(s) 362, 708
BseGI GGATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 219, 613
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 41, 597
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 534
BsnI GGCC 2 cut(s) 41, 597
Bsp119I TTCGAA 2 cut(s) 159, 770
Bsp143I GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
BspACI CCGC 3 cut(s) 140, 304, 728
BspANI GGCC 2 cut(s) 41, 597
BspCNI CTCAG 2 cut(s) 220, 612
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 354, 820
BspPI GGATC 5 cut(s) 347, 360, 399, 432, 468
BspT104I TTCGAA 2 cut(s) 159, 770
BssECI CCNNGG 2 cut(s) 362, 708
BssMI GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
BssT1I CCWWGG 2 cut(s) 362, 708
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 2 cut(s) 314, 812
Bst6I CTCTTC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 46
BstBI TTCGAA 2 cut(s) 159, 770
BstDEI CTNAG 3 cut(s) 228, 347, 599
BstF5I GGATG 1 cut(s) 556
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 7 cut(s) 211, 355, 394, 427, 476, 721, 759
BstMBI GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 1 cut(s) 823
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 821
BstSFI CTRYAG 1 cut(s) 310
BstSNI TACGTA 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 677
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 4 cut(s) 352, 391, 473, 756
BstYI RGATCY 4 cut(s) 352, 391, 473, 756
BsuRI GGCC 2 cut(s) 41, 597
BtsCI GGATG 1 cut(s) 556
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 4 cut(s) 184, 409, 607, 637
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 707
Csp6I GTAC 1 cut(s) 511
CviAII CATG 8 cut(s) 241, 388, 466, 565, 572, 680, 737, 803
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 3 cut(s) 228, 347, 599
DpnI GATC 7 cut(s) 210, 354, 393, 426, 475, 720, 758
DpnII GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 362, 708
Eco147I AGGCCT 2 cut(s) 41, 597
EcoRI GAATTC 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 821
EcoT14I CCWWGG 2 cut(s) 362, 708
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 2 cut(s) 362, 708
FaeI CATG 8 cut(s) 244, 391, 469, 568, 575, 683, 740, 806
FatI CATG 8 cut(s) 240, 387, 465, 564, 571, 679, 736, 802
FauI CCCGC 1 cut(s) 297
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 691
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 1 cut(s) 691
FspBI CTAG 1 cut(s) 850
GlaI GCGC 1 cut(s) 706
GluI GCNGC 1 cut(s) 691
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 2 cut(s) 41, 597
HapII CCGG 1 cut(s) 534
HhaI GCGC 1 cut(s) 707
Hin1II CATG 8 cut(s) 244, 391, 469, 568, 575, 683, 740, 806
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 4 cut(s) 13, 437, 676, 733
HpaII CCGG 1 cut(s) 534
HphI GGTGA 2 cut(s) 116, 742
Hpy166II GTNNAC 2 cut(s) 145, 808
Hpy188I TCNGA 5 cut(s) 18, 436, 473, 587, 723
Hpy188III TCNNGA 3 cut(s) 670, 737, 754
Hpy8I GTNNAC 2 cut(s) 145, 808
Hpy99I CGWCG 1 cut(s) 676
HpyAV CCTTC 3 cut(s) 44, 191, 569
HpyCH4III ACNGT 2 cut(s) 314, 812
HpyCH4IV ACGT 2 cut(s) 45, 163
HpyCH4V TGCA 2 cut(s) 26, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 3 cut(s) 228, 347, 599
HpySE526I ACGT 2 cut(s) 45, 163
Hsp92II CATG 8 cut(s) 244, 391, 469, 568, 575, 683, 740, 806
HspAI GCGC 1 cut(s) 705
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
LpnPI CCDG 9 cut(s) 76, 233, 441, 502, 533, 547, 788, 808, 835
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 1 cut(s) 558
MaeI CTAG 1 cut(s) 850
MaeII ACGT 2 cut(s) 45, 163
MaeIII GTNAC 3 cut(s) 243, 667, 838
MalI GATC 7 cut(s) 210, 354, 393, 426, 475, 720, 758
MboI GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
MboII GAAGA 5 cut(s) 113, 274, 386, 532, 757
MfeI CAATTG 2 cut(s) 27, 685
MflI RGATCY 4 cut(s) 352, 391, 473, 756
MluCI AATT 9 cut(s) 21, 27, 217, 251, 489, 590, 608, 685, 766
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 465, 501
MnlI CCTC 6 cut(s) 104, 217, 264, 296, 608, 808
Mph1103I ATGCAT 1 cut(s) 573
MroXI GAANNNNTTC 3 cut(s) 490, 749, 830
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 3 cut(s) 335, 536, 576
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 1 cut(s) 823
MunI CAATTG 2 cut(s) 27, 685
MvaI CCWGG 1 cut(s) 823
MwoI GCNNNNNNNGC 1 cut(s) 713
NdeII GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
NlaIII CATG 8 cut(s) 244, 391, 469, 568, 575, 683, 740, 806
NlaIV GGNNCC 2 cut(s) 354, 820
NmuCI GTSAC 3 cut(s) 243, 667, 838
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 2 cut(s) 159, 770
OliI CACNNNNGTG 1 cut(s) 536
PagI TCATGA 1 cut(s) 736
PceI AGGCCT 2 cut(s) 41, 597
PciI ACATGT 1 cut(s) 240
PdmI GAANNNNTTC 3 cut(s) 490, 749, 830
PfeI GAWTC 3 cut(s) 437, 676, 733
PfoI TCCNGGA 1 cut(s) 821
PkrI GCNGC 1 cut(s) 692
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 46
PscI ACATGT 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 821
PspGI CCWGG 1 cut(s) 821
PspN4I GGNNCC 2 cut(s) 354, 820
PsuI RGATCY 4 cut(s) 352, 391, 473, 756
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 3 cut(s) 335, 536, 576
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 691
Sau3AI GATC 7 cut(s) 208, 352, 391, 424, 473, 718, 756
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 823
SetI ASST 9 cut(s) 48, 129, 166, 173, 183, 377, 580, 667, 714
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 310
SfuI TTCGAA 2 cut(s) 159, 770
SmiMI CAYNNNNRTG 3 cut(s) 335, 536, 576
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 46
Sse9I AATT 9 cut(s) 21, 27, 217, 251, 489, 590, 608, 685, 766
SseBI AGGCCT 2 cut(s) 41, 597
SsiI CCGC 3 cut(s) 140, 304, 728
SspMI CTAG 1 cut(s) 850
StuI AGGCCT 2 cut(s) 41, 597
StyD4I CCNGG 1 cut(s) 821
StyI CCWWGG 2 cut(s) 362, 708
TaaI ACNGT 2 cut(s) 314, 812
TaiI ACGT 2 cut(s) 48, 166
TaqI TCGA 7 cut(s) 144, 159, 198, 753, 764, 770, 782
TasI AATT 9 cut(s) 21, 27, 217, 251, 489, 590, 608, 685, 766
TfiI GAWTC 3 cut(s) 437, 676, 733
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 4 cut(s) 191, 409, 607, 637
TseFI GTSAC 3 cut(s) 243, 667, 838
TseI GCWGC 1 cut(s) 690
Tsp45I GTSAC 3 cut(s) 243, 667, 838
TspDTI ATGAA 3 cut(s) 588, 668, 725
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 4 cut(s) 191, 409, 607, 637
XapI RAATTY 3 cut(s) 251, 608, 766
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 3 cut(s) 490, 749, 830
XspI CTAG 1 cut(s) 850
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.