RLG00000026856

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002782
Physical Location & Seq
Forward (+)
6542875 .. 6546891
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026856

Sequence Viewer

Length: 1236 bp
ATGGCGGGGCTGGACGGTGGATCTGCACCAGATCAGGGTCGAGACTTCGGAACTGCGCTTTTGACTATGGCGGCTTTCTTTCAGTTTTCATGGGTGCAGAGGCCTAATGAATCTTCAATATATGGCCGAAGACCTTTCATTTATAAGAAGCTTGCTAGTTCCCATCACACCTTAAATAGCTTATTGATTAATAACAAGCAAGGCATGGAAAGTAAACAGTTTGCAATATTCTTCCTTATGATATTTGCTGGTTTTGTATTGTTCGTGTTCAATCAAAGCTCGAACGGATCCAATCCATTCTTTCTTGCCCGCCAAATATGTCAAACCTCTAAACAGGTCAATGTCGACACGAGCAGGAGCGATGCGCTTGAATCAGCTTTGTCTGAGGCTTCCATGGAAAACAAGACTGTGATCATTGCGATTATAAACAAAGCCTATGTAGAAGGAGATAAGTCCATGCTTGACTTGTTTTTAGATGGTTTTTGGCTTGGAGAAGACACAAGGAACTTGATTAATCACCTACTTCTTGTGGCGGCCGATCAAACATCCTTTGAACGCTGCAAGTTTCTCCATCTTCACTGCTACAAGCTTGAGACGGCCGGAGTCAATTTTGATGCTGAGGAAGTGTACATGTCTCAAGATTTTATCAAGATGATGTGGAGGAGAACTCTCTTTCTCGGAGAGACACTGAAGAAAGGCTATAGTTTCATATTCACGGATGCGGATGTGATGTGGCTACGGAATCCATTTCCAAGGCTCAAGTACAACCAAAGCTTAGATAGCTTAGATCTCCAGATCAGTACTGATAATTTCAATGGCGATCAGTGGTCTGAAGCCAACCCCATCAACTCAGGCTTCTACATTGTGCGGTCCAACAACAGAACAATCTCATTATTCGACAAGTGGTACGCCAGGAAAGACGACTCCGCTGGATTGAAAGAGCAGGATGTTCTAAACAACATGATCCGGGAAGGTGTTTTCAAGGAGTTAGGCCTCAGAGTTAGGTTTTTGGACACCCTTTATTTCAGTGGCTTTTGTGAAGTCAGCAGGGACTTCGAAGCTGTGACAACCGTTCATGCTAACTGTTGCCGCACAATAAGCGCCAAGGTGGTGGATCTGACGGCTGTGATTCACGACTGGAAGAGGTTCAAGAGCTTAACTAACTCAAATCAGACGTCGATTTTGCAATGGACTAACCATGTAGCCTGCCATAACTCCTGGAGACGTCACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

412

Amino Acids

47.2

Weight (kDa)

7.63

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 170 - 372 1.2e-63 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 144, 425
AatII GACGTC 2 cut(s) 1178, 1228
AccI GTMKAC 1 cut(s) 345
AciI CCGC 8 cut(s) 5, 71, 310, 533, 722, 868, 927, 1090
AclWI GGATC 5 cut(s) 28, 282, 295, 958, 1122
AcoI YGGCCR 3 cut(s) 124, 534, 597
AcuI CTGAAG 2 cut(s) 710, 852
AcyI GRCGYC 2 cut(s) 1175, 1225
AfaI GTAC 4 cut(s) 629, 764, 802, 908
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 8 cut(s) 117, 271, 371, 554, 814, 937, 982, 1150
AjnI CCWGG 2 cut(s) 911, 1217
AluBI AGCT 9 cut(s) 151, 180, 279, 377, 589, 774, 783, 1061, 1155
AluI AGCT 9 cut(s) 151, 180, 279, 377, 589, 774, 783, 1061, 1155
Alw26I GTCTC 5 cut(s) 36, 587, 639, 677, 1216
AlwI GGATC 5 cut(s) 28, 282, 295, 958, 1122
AoxI GGCC 5 cut(s) 101, 124, 534, 597, 991
ApeKI GCWGC 1 cut(s) 558
ArsI GACNNNNNNTTYG 4 cut(s) 1160, 1165, 1192, 1197
AseI ATTAAT 2 cut(s) 189, 513
Asp700I GAANNNNTTC 1 cut(s) 1145
AspLEI GCGC 3 cut(s) 58, 367, 1103
AspS9I GGNCC 1 cut(s) 870
AsuC2I CCSGG 1 cut(s) 968
AsuHPI GGTGA 2 cut(s) 509, 1220
AsuII TTCGAA 1 cut(s) 1056
AvaII GGWCC 1 cut(s) 870
BamHI GGATCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 136, 501
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 1 cut(s) 545
BccI CCATC 4 cut(s) 171, 470, 579, 851
BceAI ACGGC 2 cut(s) 612, 1137
BcgI CGANNNNNNTGC 2 cut(s) 1036, 1070
BciT130I CCWGG 2 cut(s) 913, 1219
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 968
BcoDI GTCTC 5 cut(s) 36, 587, 639, 677, 1216
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 1 cut(s) 1104
BglII AGATCT 1 cut(s) 787
BisI GCNGC 4 cut(s) 72, 534, 559, 1090
BlsI GCNGC 4 cut(s) 73, 535, 560, 1091
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 3 cut(s) 913, 968, 1219
Bme18I GGWCC 1 cut(s) 870
BmgT120I GGNCC 1 cut(s) 870
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 3 cut(s) 913, 968, 1219
BmsI GCATC 3 cut(s) 352, 604, 709
BpiI GAAGAC 2 cut(s) 136, 501
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 1 cut(s) 776
Bpu10I CCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 1056
BpuEI CTTGAG 3 cut(s) 611, 621, 743
BpuMI CCSGG 1 cut(s) 968
BsaHI GRCGYC 2 cut(s) 1175, 1225
BsaJI CCNNGG 3 cut(s) 393, 752, 1104
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 1142
Bse3DI GCAATG 2 cut(s) 414, 1193
BseBI CCWGG 2 cut(s) 913, 1219
BseDI CCNNGG 3 cut(s) 393, 752, 1104
BseGI GGATG 4 cut(s) 545, 724, 730, 952
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 414, 1193
BseMII CTCAG 4 cut(s) 375, 609, 864, 1009
BseNI ACTGG 1 cut(s) 1142
BseRI GAGGAG 1 cut(s) 676
BseX3I CGGCCG 2 cut(s) 534, 597
BseXI GCAGC 1 cut(s) 545
BsgI GTGCAG 2 cut(s) 9, 116
Bsh1285I CGRYCG 2 cut(s) 537, 600
BshFI GGCC 5 cut(s) 103, 126, 536, 599, 993
BsiEI CGRYCG 2 cut(s) 537, 600
BsiSI CCGG 2 cut(s) 600, 967
BslFI GGGAC 1 cut(s) 1064
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 5 cut(s) 36, 587, 639, 677, 1216
BsmBI CGTCTC 2 cut(s) 587, 1216
BsmFI GGGAC 1 cut(s) 1064
BsnI GGCC 5 cut(s) 103, 126, 536, 599, 993
Bsp119I TTCGAA 1 cut(s) 1056
Bsp1407I TGTACA 1 cut(s) 627
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 8 cut(s) 5, 71, 310, 533, 722, 868, 927, 1090
BspANI GGCC 5 cut(s) 103, 126, 536, 599, 993
BspCNI CTCAG 4 cut(s) 376, 610, 863, 1008
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 5 cut(s) 28, 282, 295, 958, 1122
BspT104I TTCGAA 1 cut(s) 1056
BsrDI GCAATG 2 cut(s) 414, 1193
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 1 cut(s) 1142
BssECI CCNNGG 3 cut(s) 393, 752, 1104
BssNI GRCGYC 2 cut(s) 1175, 1225
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 3 cut(s) 393, 752, 1104
Bst2BI CACGAG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 913, 1219
Bst4CI ACNGT 6 cut(s) 17, 219, 409, 1072, 1085, 1232
Bst6I CTCTTC 1 cut(s) 1136
BstACI GRCGYC 2 cut(s) 1175, 1225
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 1056
BstC8I GCNNGC 3 cut(s) 153, 310, 1207
BstDEI CTNAG 6 cut(s) 384, 618, 775, 784, 850, 995
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 4 cut(s) 545, 724, 730, 952
BstH2I RGCGCY 1 cut(s) 1104
BstHHI GCGC 3 cut(s) 58, 367, 1103
BstMAI GTCTC 5 cut(s) 36, 587, 639, 677, 1216
BstMCI CGRYCG 2 cut(s) 537, 600
BstMWI GCNNNNNNNGC 2 cut(s) 780, 1098
BstNI CCWGG 2 cut(s) 913, 1219
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 911, 966, 1217
BstSFI CTRYAG 1 cut(s) 700
BstV1I GCAGC 1 cut(s) 545
BstV2I GAAGAC 2 cut(s) 136, 501
BstX2I RGATCY 4 cut(s) 20, 287, 787, 1114
BstXI CCANNNNNNTGG 1 cut(s) 1111
BstYI RGATCY 4 cut(s) 20, 287, 787, 1114
BstZI CGGCCG 2 cut(s) 534, 597
BsuRI GGCC 5 cut(s) 103, 126, 536, 599, 993
BtgI CCRYGG 1 cut(s) 393
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 4 cut(s) 545, 724, 730, 952
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 4 cut(s) 577, 686, 830, 1033
Cac8I GCNNGC 3 cut(s) 153, 310, 1207
CfoI GCGC 3 cut(s) 58, 367, 1103
Cfr13I GGNCC 1 cut(s) 870
Csp6I GTAC 4 cut(s) 628, 763, 801, 907
CviAII CATG 8 cut(s) 90, 205, 394, 457, 631, 961, 1076, 1199
CviQI GTAC 4 cut(s) 628, 763, 801, 907
DdeI CTNAG 6 cut(s) 384, 618, 775, 784, 850, 995
EaeI YGGCCR 3 cut(s) 124, 534, 597
EagI CGGCCG 2 cut(s) 534, 597
Eam1104I CTCTTC 1 cut(s) 1136
EarI CTCTTC 1 cut(s) 1136
EclXI CGGCCG 2 cut(s) 534, 597
Eco130I CCWWGG 3 cut(s) 393, 752, 1104
Eco147I AGGCCT 2 cut(s) 103, 993
Eco47I GGWCC 1 cut(s) 870
Eco52I CGGCCG 2 cut(s) 534, 597
Eco57I CTGAAG 2 cut(s) 710, 852
EcoRII CCWGG 2 cut(s) 911, 1217
EcoT14I CCWWGG 3 cut(s) 393, 752, 1104
ErhI CCWWGG 3 cut(s) 393, 752, 1104
Esp3I CGTCTC 2 cut(s) 587, 1216
FaeI CATG 8 cut(s) 93, 208, 397, 460, 634, 964, 1079, 1202
FaqI GGGAC 1 cut(s) 1064
FatI CATG 8 cut(s) 89, 204, 393, 456, 630, 960, 1075, 1198
FauI CCCGC 1 cut(s) 317
FbaI TGATCA 1 cut(s) 411
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 4 cut(s) 72, 534, 559, 1090
FokI GGATG 4 cut(s) 532, 731, 737, 959
Fsp4HI GCNGC 4 cut(s) 72, 534, 559, 1090
FspBI CTAG 1 cut(s) 156
GlaI GCGC 3 cut(s) 57, 366, 1102
GluI GCNGC 4 cut(s) 72, 534, 559, 1090
GsuI CTGGAG 1 cut(s) 776
HaeII RGCGCY 1 cut(s) 1104
HaeIII GGCC 5 cut(s) 103, 126, 536, 599, 993
HapII CCGG 2 cut(s) 600, 967
HhaI GCGC 3 cut(s) 58, 367, 1103
Hin1I GRCGYC 2 cut(s) 1175, 1225
Hin1II CATG 8 cut(s) 93, 208, 397, 460, 634, 964, 1079, 1202
Hin6I GCGC 3 cut(s) 56, 365, 1101
HinP1I GCGC 3 cut(s) 56, 365, 1101
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 3 cut(s) 149, 587, 772
HinfI GANTC 6 cut(s) 110, 371, 603, 742, 923, 1129
HpaII CCGG 2 cut(s) 600, 967
HphI GGTGA 2 cut(s) 509, 1220
Hpy166II GTNNAC 3 cut(s) 215, 346, 628
Hpy188I TCNGA 7 cut(s) 50, 385, 680, 832, 998, 1119, 1173
Hpy188III TCNNGA 6 cut(s) 41, 638, 649, 793, 1133, 1150
Hpy8I GTNNAC 3 cut(s) 215, 346, 628
Hpy99I CGWCG 1 cut(s) 1180
HpyAV CCTTC 2 cut(s) 437, 965
HpyCH4III ACNGT 6 cut(s) 17, 219, 409, 1072, 1085, 1232
HpyCH4IV ACGT 2 cut(s) 1175, 1225
HpyCH4V TGCA 5 cut(s) 26, 97, 224, 561, 1186
HpyF10VI GCNNNNNNNGC 2 cut(s) 780, 1098
HpyF3I CTNAG 6 cut(s) 384, 618, 775, 784, 850, 995
HpySE526I ACGT 2 cut(s) 1175, 1225
Hsp92I GRCGYC 2 cut(s) 1175, 1225
Hsp92II CATG 8 cut(s) 93, 208, 397, 460, 634, 964, 1079, 1202
HspAI GCGC 3 cut(s) 56, 365, 1101
Ksp22I TGATCA 1 cut(s) 411
LmnI GCTCC 1 cut(s) 357
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 3 cut(s) 352, 604, 709
MaeI CTAG 1 cut(s) 156
MaeII ACGT 2 cut(s) 1175, 1225
MaeIII GTNAC 2 cut(s) 1063, 1226
MboII GAAGA 7 cut(s) 105, 141, 223, 506, 566, 703, 1153
MflI RGATCY 4 cut(s) 20, 287, 787, 1114
MluCI AATT 2 cut(s) 607, 808
MlyI GAGTC 2 cut(s) 612, 917
MmeI TCCRAC 1 cut(s) 897
MnlI CCTC 7 cut(s) 93, 337, 379, 613, 654, 1004, 1137
MroXI GAANNNNTTC 1 cut(s) 1145
MseI TTAA 5 cut(s) 173, 189, 513, 1157, 1234
MspA1I CMGCKG 1 cut(s) 929
MspI CCGG 2 cut(s) 600, 967
MspR9I CCNGG 3 cut(s) 913, 968, 1219
MvaI CCWGG 2 cut(s) 913, 1219
MwoI GCNNNNNNNGC 2 cut(s) 780, 1098
NciI CCSGG 1 cut(s) 968
NcoI CCATGG 1 cut(s) 393
NlaIII CATG 8 cut(s) 93, 208, 397, 460, 634, 964, 1079, 1202
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 1063, 1226
NspI RCATGY 1 cut(s) 634
NspV TTCGAA 1 cut(s) 1056
PceI AGGCCT 2 cut(s) 103, 993
PciI ACATGT 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 1145
PfeI GAWTC 4 cut(s) 110, 371, 742, 1129
PfoI TCCNGGA 2 cut(s) 966, 1217
PkrI GCNGC 4 cut(s) 73, 535, 560, 1091
PleI GAGTC 2 cut(s) 611, 917
PpsI GAGTC 2 cut(s) 611, 917
PscI ACATGT 1 cut(s) 630
PshBI ATTAAT 2 cut(s) 189, 513
PsiI TTATAA 2 cut(s) 144, 425
Psp6I CCWGG 2 cut(s) 911, 1217
PspGI CCWGG 2 cut(s) 911, 1217
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 870
PsuI RGATCY 4 cut(s) 20, 287, 787, 1114
RsaI GTAC 4 cut(s) 629, 764, 802, 908
RsaNI GTAC 4 cut(s) 628, 763, 801, 907
SalI GTCGAC 1 cut(s) 344
SaqAI TTAA 5 cut(s) 173, 189, 513, 1157, 1234
SatI GCNGC 4 cut(s) 72, 534, 559, 1090
Sau96I GGNCC 1 cut(s) 870
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 2 cut(s) 612, 917
ScrFI CCNGG 3 cut(s) 913, 968, 1219
SfaNI GCATC 3 cut(s) 352, 604, 709
SfcI CTRYAG 1 cut(s) 700
SfuI TTCGAA 1 cut(s) 1056
SinI GGWCC 1 cut(s) 870
SmlI CTYRAG 3 cut(s) 590, 636, 758
SmoI CTYRAG 3 cut(s) 590, 636, 758
Sse9I AATT 2 cut(s) 607, 808
SseBI AGGCCT 2 cut(s) 103, 993
SsiI CCGC 8 cut(s) 5, 71, 310, 533, 722, 868, 927, 1090
SspI AATATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 156
StuI AGGCCT 2 cut(s) 103, 993
StyD4I CCNGG 3 cut(s) 911, 966, 1217
StyI CCWWGG 3 cut(s) 393, 752, 1104
TaaI ACNGT 6 cut(s) 17, 219, 409, 1072, 1085, 1232
TaiI ACGT 2 cut(s) 1178, 1228
TaqI TCGA 6 cut(s) 40, 281, 345, 897, 1056, 1178
TasI AATT 2 cut(s) 607, 808
TatI WGTACW 3 cut(s) 627, 762, 800
TauI GCSGC 3 cut(s) 74, 536, 1092
TfiI GAWTC 4 cut(s) 110, 371, 742, 1129
Tru1I TTAA 5 cut(s) 173, 189, 513, 1157, 1234
Tru9I TTAA 5 cut(s) 173, 189, 513, 1157, 1234
TscAI CASTG 4 cut(s) 584, 693, 830, 1033
TseFI GTSAC 2 cut(s) 1063, 1226
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 2 cut(s) 1063, 1226
TspDTI ATGAA 5 cut(s) 78, 123, 127, 697, 1064
TspGWI ACGGA 3 cut(s) 300, 731, 754
TspRI CASTG 4 cut(s) 584, 693, 830, 1033
VpaK11BI GGWCC 1 cut(s) 870
VspI ATTAAT 2 cut(s) 189, 513
XceI RCATGY 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 1145
XspI CTAG 1 cut(s) 156
ZraI GACGTC 2 cut(s) 1176, 1226
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.