Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002782

Physical Location & Seq

Genomic Coordinates Forward (+)

24245279 .. 24245946

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTAGACAAGGTCATCAACAATATCTCAAATCTTAACAATCCACCACCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCACTGATCACAAGTGTGCCTCTGGTGAGGTGGGACTGCAGAATGCCACACAGGTGTGGAAGAGTTATGTGTGTAAGGTTAACACGGCAGGCATCTGTATAACTCCTGGACGGTTGACTCCCATCTTCTACGACCAAATGGAAGCTGCAGTAAATGTGAGTTATGGTCTGTATACTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACATTCACCGACATAAGTAATAGGAATTGTCCTGGCCTTCGAAAACATAGCAGCTGGATCTACATTGGGCTGGTAATGGTATCTGCAGCAGTCATGTTATCGTTGATCTTTTGGGTAATCTACGCAAGGGAACGAAGGCACCGCGTGTACATCAAGCAGTTTATGGCTGGAGGTGGAGGAACAGGGGGATTCCAAGTCCAAAACAAGGGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

187

Amino Acids

20.75

Weight (kDa)

8.74

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28695 AT1G28700 AT1G28710 AT1G28710 AT1G28710
fragaria_vesca	FvH4_7g09180 FvH4_7g26450
malus_domestica	MD02G1220400.v1.1 MD07G1096700.v1.1 MD07G1240000.v1.1
prunus_persica	Prupe.2G120400_v2.0.a1 Prupe.2G120400_v2.0.a1 Prupe.2G120500_v2.0.a1 Prupe.2G268600_v2.0.a1 Prupe.2G268700_v2.0.a1 Prupe.3G146900_v2.0.a1
pyrus_communis	pycom07g07980 pycom07g21600
rosa_chinensis	RchiOBHm_Chr1g0345241 RchiOBHm_Chr1g0373041
rosa_laevigata	RLG00000026856 RLG00000028846
rosa_multiflora	Rmu_sc0002329.1_g000002 Rmu_sc0003175.1_g000001 Rmu_ssc0000425.1_g000009
rosa_roxburghii	Rroxscaffold_4G00284520 Rroxscaffold_4G00309180
rosa_rugosa	Rorug01G0176800 Rorug01G0375600
rosa_samantha	Rh1AG194900 Rh1AG383900 Rh1BG161100 Rh1BG347900 Rh1CG179400 Rh1CG361300 Rh1DG191300 Rh1DG378800
rosa_wichuraiana	Rw1G016050 Rw1G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	486
AccI	GTMKAC	2 cut(s)	6, 296
AccII	CGCG	1 cut(s)	492
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	1 cut(s)	413
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	2 cut(s)	56, 553
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	229, 379
AleI	CACNNNNGTG	3 cut(s)	138, 176, 178
AluBI	AGCT	2 cut(s)	269, 402
AluI	AGCT	2 cut(s)	269, 402
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	82, 382
ApeKI	GCWGC	3 cut(s)	269, 399, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspS9I	GGNCC	3 cut(s)	59, 83, 305
AsuHPI	GGTGA	2 cut(s)	161, 346
AsuII	TTCGAA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	59, 305
BanI	GGYRCC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	256, 411, 446
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	231, 381
BclI	TGATCA	1 cut(s)	130
BfmI	CTRYAG	3 cut(s)	161, 270, 432
BisI	GCNGC	3 cut(s)	270, 400, 435
BlsI	GCNGC	3 cut(s)	271, 401, 436
Bme1390I	CCNGG	2 cut(s)	231, 381
Bme18I	GGWCC	2 cut(s)	59, 305
BmgT120I	GGNCC	3 cut(s)	59, 83, 305
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	231, 381
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 553
BseBI	CCWGG	2 cut(s)	231, 381
BseLI	CCNNNNNNNGG	2 cut(s)	56, 553
BseXI	GCAGC	3 cut(s)	256, 411, 446
BsgI	GTGCAG	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	84, 384
BshNI	GGYRCC	1 cut(s)	486
BslFI	GGGAC	2 cut(s)	171, 359
BslI	CCNNNNNNNGG	2 cut(s)	56, 553
BsmFI	GGGAC	2 cut(s)	171, 359
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	84, 384
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	5 cut(s)	121, 130, 319, 405, 453
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	84, 384
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	3 cut(s)	165, 274, 436
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	495
BssMI	GATC	5 cut(s)	121, 130, 319, 405, 453
BssNAI	GTATAC	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	231, 381
Bst4CI	ACNGT	2 cut(s)	63, 237
Bst6I	CTCTTC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	492
BstKTI	GATC	5 cut(s)	124, 133, 322, 408, 456
BstMBI	GATC	5 cut(s)	121, 130, 319, 405, 453
BstNI	CCWGG	2 cut(s)	231, 381
BstSCI	CCNGG	2 cut(s)	229, 379
BstSFI	CTRYAG	3 cut(s)	161, 270, 432
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	256, 411, 446
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BstZ17I	GTATAC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	84, 384
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	59, 83, 305
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	1 cut(s)	442
CviJI	RGCY	6 cut(s)	84, 269, 384, 402, 418, 515
CviKI_1	RGCY	6 cut(s)	84, 269, 384, 402, 418, 515
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	5 cut(s)	123, 132, 321, 407, 455
DpnII	GATC	5 cut(s)	121, 130, 319, 405, 453
DraIII	CACNNNGTG	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	59, 305
EcoRII	CCWGG	2 cut(s)	229, 379
FaeI	CATG	1 cut(s)	445
FaqI	GGGAC	2 cut(s)	171, 359
FatI	CATG	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	2 cut(s)	6, 296
Fnu4HI	GCNGC	3 cut(s)	270, 400, 435
Fsp4HI	GCNGC	3 cut(s)	270, 400, 435
GluI	GCNGC	3 cut(s)	270, 400, 435
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	84, 384
Hin1II	CATG	1 cut(s)	445
HincII	GTYRAC	2 cut(s)	205, 240
HindII	GTYRAC	2 cut(s)	205, 240
HinfI	GANTC	2 cut(s)	241, 537
HpaI	GTTAAC	1 cut(s)	205
HphI	GGTGA	2 cut(s)	161, 346
Hpy166II	GTNNAC	5 cut(s)	7, 205, 240, 297, 496
Hpy8I	GTNNAC	5 cut(s)	7, 205, 240, 297, 496
HpyAV	CCTTC	2 cut(s)	395, 477
HpyCH4III	ACNGT	2 cut(s)	63, 237
HpyCH4V	TGCA	6 cut(s)	105, 163, 272, 325, 333, 434
HpyF3I	CTNAG	1 cut(s)	561
Hsp92II	CATG	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	121, 130, 319, 405, 453
Lsp1109I	GCAGC	3 cut(s)	256, 411, 446
LweI	GCATC	1 cut(s)	225
MalI	GATC	5 cut(s)	123, 132, 321, 407, 455
MboI	GATC	5 cut(s)	121, 130, 319, 405, 453
MboII	GAAGA	2 cut(s)	196, 241
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	96, 145, 154, 512, 518
MseI	TTAA	2 cut(s)	36, 204
MslI	CAYNNNNRTG	3 cut(s)	138, 176, 178
MspA1I	CMGCKG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	231, 381
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	2 cut(s)	231, 381
MvnI	CGCG	1 cut(s)	492
NdeII	GATC	5 cut(s)	121, 130, 319, 405, 453
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	388
OliI	CACNNNNGTG	3 cut(s)	138, 176, 178
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	537
PflFI	GACNNNGTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	271, 401, 436
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	229, 379
PspGI	CCWGG	2 cut(s)	229, 379
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	3 cut(s)	59, 83, 305
PstI	CTGCAG	3 cut(s)	165, 274, 436
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	402
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	3 cut(s)	138, 176, 178
SaqAI	TTAA	2 cut(s)	36, 204
SatI	GCNGC	3 cut(s)	270, 400, 435
Sau3AI	GATC	5 cut(s)	121, 130, 319, 405, 453
Sau96I	GGNCC	3 cut(s)	59, 83, 305
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	231, 381
SetI	ASST	8 cut(s)	15, 97, 156, 180, 204, 271, 404, 523
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	3 cut(s)	161, 270, 432
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	2 cut(s)	59, 305
SmiMI	CAYNNNNRTG	3 cut(s)	138, 176, 178
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	229, 379
TaaI	ACNGT	2 cut(s)	63, 237
TaqI	TCGA	1 cut(s)	388
TasI	AATT	1 cut(s)	373
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	36, 204
Tru9I	TTAA	2 cut(s)	36, 204
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	269, 399, 434
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	59, 305
XmiI	GTMKAC	2 cut(s)	6, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.