AT1G28710

BEST Arabidopsis thaliana protein match is Nucleotide-diphospho-sugar transferase family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002782
Physical Location & Seq
Reverse (-)
10086366 .. 10089772
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28710.3

Sequence Viewer

Length: 1023 bp
ATGCCTTCCTTCAACTCCTCCGGCAATCTCGCGGTGGCCGTTGCTCTTCTCTTTGCGGGCGCCTTATATTTCTATTTCTCATCAATTACGGTTTCTGATCCTATGTCCGATCTACTACACAATGTCGAAACTAGATGGACAGAGTATCCTGTGGACGAGCTAGAGGCGGTCCTAGACAAGGCAGCAATGGGAAACAACAAAACGGTGATTATAGCAATGGTGAACAAAGCTTACGTGGAGGAGGTTGAAGGAGGGAGGACAATGCTGGATCTGTTTTTGGAGAGTTTTTGGGAAGGAGAGGGTACTCGGCCGCTTCTTGACCATCTGATGCTAGTGGCAGCGGATCAGACTTCCTACGATCGTTGCCTCTTCAGGAGGCTCCACTGCTACAAGATGGATACCGATGGGGTTGACTTGGAGGGAGAGAAGGTATATATGTCAAAAGATTTCATTGAGATGATGTGGCGGAGGACTCACTTGCTCCTAGACGTCCTCAGCCGCGGCTACAATCTTACTTTCACGGACACGGACGTGATGTGGCTAAGGAGCCCTTTTCCCCGACTAAGCTACAACGAGAGCTTGGATATGCAGATAAGCGTGGACAGTATTGGCCTGGTTGGAGGACACTTGATCAACACGGGATTCTACCACGTCAGGTCCAACAACAAGACCATCTCCCTCTTCCAGAAATGGTACGACATGAGGCTCAAGTCGACGGGCATGAAGGAACAAGATGTCCTTAAGAGTCTCCTAGACTCTGGTTTCTTTAACCAGCTTGGCCTCAACGTTGGCTTCCTCAACACTACCGAATTCAGTGGCTTCTGCCAAGACAGCCATGACATGGGCGTTGTCACCACCGTCCATGCCAACTGTTGCCGCCACATCCTTGCTAAGATCTCTGATCTAACTCTTGTTCTTCGTGACTGGAAACGCTACAAAGCCTCCCATGTCAACAGCAATTGGAGCCCCCATGTTGAGTGCGGGCGTTCATGGAGTGACACTCACTATATCCCCAAGCTCTGA

Protein Analysis

340

Amino Acids

38.87

Weight (kDa)

5.63

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 105 - 302 2e-59 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 841
AccI GTMKAC 1 cut(s) 713
AccII CGCG 2 cut(s) 32, 501
AclI AACGTT 1 cut(s) 786
AclWI GGATC 3 cut(s) 92, 276, 351
AcoI YGGCCR 2 cut(s) 36, 308
AcsI RAATTY 1 cut(s) 809
AcuI CTGAAG 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 60, 489
AfaI GTAC 2 cut(s) 304, 695
AfiI CCNNNNNNNGG 2 cut(s) 178, 841
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 2 cut(s) 13, 248
AjiI CACGTC 2 cut(s) 532, 652
AjnI CCWGG 1 cut(s) 612
AleI CACNNNNGTG 1 cut(s) 530
AloI GAACNNNNNNTCC 2 cut(s) 720, 752
AluBI AGCT 6 cut(s) 160, 230, 567, 579, 775, 1018
AluI AGCT 6 cut(s) 160, 230, 567, 579, 775, 1018
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 3 cut(s) 92, 276, 351
AoxI GGCC 4 cut(s) 36, 308, 610, 778
ApeKI GCWGC 2 cut(s) 182, 338
ApoI RAATTY 1 cut(s) 809
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 169, 657
AsuHPI GGTGA 3 cut(s) 217, 232, 844
AvaII GGWCC 2 cut(s) 169, 657
BanI GGYRCC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 551, 968
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 2 cut(s) 194, 350
BccI CCATC 5 cut(s) 129, 330, 388, 398, 680
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 614
BciVI GTATCC 2 cut(s) 156, 391
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 752
BfaI CTAG 6 cut(s) 132, 161, 173, 332, 485, 752
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 740
BfuI GTATCC 2 cut(s) 156, 391
BglII AGATCT 1 cut(s) 894
BisI GCNGC 6 cut(s) 183, 311, 339, 499, 502, 877
BlsI GCNGC 6 cut(s) 184, 312, 340, 500, 503, 878
Bme1390I CCNGG 1 cut(s) 614
Bme18I GGWCC 2 cut(s) 169, 657
BmgBI CACGTC 2 cut(s) 532, 652
BmgT120I GGNCC 2 cut(s) 169, 657
BmiI GGNNCC 4 cut(s) 61, 380, 548, 965
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 985, 1017
Bpu10I CCTNAGC 2 cut(s) 494, 542
BpuEI CTTGAG 1 cut(s) 692
BsaAI YACGTR 1 cut(s) 235
BsaHI GRCGYC 2 cut(s) 60, 489
BsaJI CCNNGG 1 cut(s) 499
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 926, 956
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 841
Bse1I ACTGG 1 cut(s) 929
Bse3DI GCAATG 2 cut(s) 192, 222
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 1 cut(s) 882
BseLI CCNNNNNNNGG 2 cut(s) 178, 841
BseMI GCAATG 2 cut(s) 192, 222
BseMII CTCAG 1 cut(s) 508
BseNI ACTGG 1 cut(s) 929
BseRI GAGGAG 2 cut(s) 7, 254
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 194, 350
Bsh1236I CGCG 2 cut(s) 32, 501
Bsh1285I CGRYCG 2 cut(s) 311, 361
BshFI GGCC 4 cut(s) 38, 310, 612, 780
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 2 cut(s) 311, 361
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 178, 841
BsmAI GTCTC 1 cut(s) 752
BsnI GGCC 4 cut(s) 38, 310, 612, 780
Bsp1286I GDGCHC 2 cut(s) 551, 968
Bsp143I GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
BspANI GGCC 4 cut(s) 38, 310, 612, 780
BspCNI CTCAG 1 cut(s) 507
BspFNI CGCG 2 cut(s) 32, 501
BspLI GGNNCC 4 cut(s) 61, 380, 548, 965
BspPI GGATC 3 cut(s) 92, 276, 351
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 2 cut(s) 192, 222
BsrI ACTGG 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
BssNI GRCGYC 2 cut(s) 60, 489
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 5 cut(s) 91, 205, 605, 859, 872
Bst6I CTCTTC 3 cut(s) 51, 374, 686
BstACI GRCGYC 2 cut(s) 60, 489
BstAFI CTTAAG 1 cut(s) 740
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 58, 983
BstDEI CTNAG 4 cut(s) 494, 542, 563, 891
BstDSI CCRYGG 1 cut(s) 499
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 882
BstFNI CGCG 2 cut(s) 32, 501
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 8 cut(s) 100, 112, 271, 346, 361, 633, 897, 904
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
BstMCI CGRYCG 2 cut(s) 311, 361
BstMWI GCNNNNNNNGC 2 cut(s) 831, 963
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 612
BstUI CGCG 2 cut(s) 32, 501
BstV1I GCAGC 2 cut(s) 194, 350
BstX2I RGATCY 2 cut(s) 268, 894
BstYI RGATCY 2 cut(s) 268, 894
BstZI CGGCCG 1 cut(s) 308
BsuI GTATCC 2 cut(s) 156, 391
BsuRI GGCC 4 cut(s) 38, 310, 612, 780
BtgI CCRYGG 1 cut(s) 499
BtrI CACGTC 2 cut(s) 532, 652
BtsCI GGATG 1 cut(s) 882
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 2 cut(s) 382, 820
Cac8I GCNNGC 2 cut(s) 58, 983
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 169, 657
Cfr42I CCGCGG 1 cut(s) 502
Csp6I GTAC 2 cut(s) 303, 694
CviAII CATG 8 cut(s) 700, 721, 836, 841, 863, 947, 971, 990
CviQI GTAC 2 cut(s) 303, 694
DdeI CTNAG 4 cut(s) 494, 542, 563, 891
DinI GGCGCC 1 cut(s) 61
DpnI GATC 8 cut(s) 99, 111, 270, 345, 360, 632, 896, 903
DpnII GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
EaeI YGGCCR 2 cut(s) 36, 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 3 cut(s) 51, 374, 686
EarI CTCTTC 3 cut(s) 51, 374, 686
EciI GGCGGA 1 cut(s) 481
EclXI CGGCCG 1 cut(s) 308
Eco24I GRGCYC 2 cut(s) 551, 968
Eco47I GGWCC 2 cut(s) 169, 657
Eco52I CGGCCG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 355
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 612
EcoT38I GRGCYC 2 cut(s) 551, 968
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
FaeI CATG 8 cut(s) 703, 724, 839, 844, 866, 950, 974, 993
FalI AAGNNNNNCTT 4 cut(s) 535, 567, 723, 755
FatI CATG 8 cut(s) 699, 720, 835, 840, 862, 946, 970, 989
FauI CCCGC 2 cut(s) 49, 974
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 6 cut(s) 183, 311, 339, 499, 502, 877
FokI GGATG 1 cut(s) 869
FriOI GRGCYC 2 cut(s) 551, 968
Fsp4HI GCNGC 6 cut(s) 183, 311, 339, 499, 502, 877
FspBI CTAG 6 cut(s) 132, 161, 173, 332, 485, 752
GlaI GCGC 1 cut(s) 61
GluI GCNGC 6 cut(s) 183, 311, 339, 499, 502, 877
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 4 cut(s) 38, 310, 612, 780
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 2 cut(s) 60, 489
Hin1II CATG 8 cut(s) 703, 724, 839, 844, 866, 950, 974, 993
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 3 cut(s) 412, 714, 952
HindII GTYRAC 3 cut(s) 412, 714, 952
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 4 cut(s) 472, 642, 745, 755
HpaII CCGG 1 cut(s) 21
HphI GGTGA 3 cut(s) 217, 232, 844
Hpy166II GTNNAC 6 cut(s) 154, 223, 412, 601, 714, 952
Hpy188I TCNGA 6 cut(s) 97, 109, 327, 348, 901, 1022
Hpy188III TCNNGA 4 cut(s) 317, 373, 685, 920
Hpy8I GTNNAC 6 cut(s) 154, 223, 412, 601, 714, 952
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 6 cut(s) 15, 19, 242, 287, 421, 718
HpyCH4III ACNGT 5 cut(s) 91, 205, 605, 859, 872
HpyCH4IV ACGT 5 cut(s) 234, 489, 531, 651, 786
HpyCH4V TGCA 1 cut(s) 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 831, 963
HpyF3I CTNAG 4 cut(s) 494, 542, 563, 891
HpySE526I ACGT 5 cut(s) 234, 489, 531, 651, 786
Hsp92I GRCGYC 2 cut(s) 60, 489
Hsp92II CATG 8 cut(s) 703, 724, 839, 844, 866, 950, 974, 993
HspAI GCGC 1 cut(s) 60
KasI GGCGCC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 630
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 4 cut(s) 384, 486, 546, 963
Lsp1109I GCAGC 2 cut(s) 194, 350
LweI GCATC 1 cut(s) 318
MaeI CTAG 6 cut(s) 132, 161, 173, 332, 485, 752
MaeII ACGT 5 cut(s) 234, 489, 531, 651, 786
MaeIII GTNAC 3 cut(s) 850, 920, 995
MalI GATC 8 cut(s) 99, 111, 270, 345, 360, 632, 896, 903
MboI GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
MboII GAAGA 4 cut(s) 38, 361, 673, 908
MfeI CAATTG 1 cut(s) 958
MflI RGATCY 2 cut(s) 268, 894
MhlI GDGCHC 2 cut(s) 551, 968
MluCI AATT 3 cut(s) 84, 809, 958
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 3 cut(s) 466, 749, 754
MmeI TCCRAC 2 cut(s) 598, 684
MseI TTAA 2 cut(s) 741, 768
MslI CAYNNNNRTG 2 cut(s) 455, 530
MspA1I CMGCKG 2 cut(s) 341, 501
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 614
MunI CAATTG 1 cut(s) 958
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 2 cut(s) 32, 501
MwoI GCNNNNNNNGC 2 cut(s) 831, 963
NarI GGCGCC 1 cut(s) 60
NdeII GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
NlaIII CATG 8 cut(s) 703, 724, 839, 844, 866, 950, 974, 993
NlaIV GGNNCC 4 cut(s) 61, 380, 548, 965
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 3 cut(s) 850, 920, 995
OliI CACNNNNGTG 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 1 cut(s) 642
PflMI CCANNNNNTGG 1 cut(s) 841
PkrI GCNGC 6 cut(s) 184, 312, 340, 500, 503, 878
Ple19I CGATCG 1 cut(s) 361
PleI GAGTC 3 cut(s) 466, 749, 753
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 3 cut(s) 466, 749, 753
Ppu21I YACGTR 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 4 cut(s) 61, 380, 548, 965
PspPI GGNCC 2 cut(s) 169, 657
PsrI GAACNNNNNNTAC 2 cut(s) 215, 247
PsuI RGATCY 2 cut(s) 268, 894
PvuI CGATCG 1 cut(s) 361
RsaI GTAC 2 cut(s) 304, 695
RsaNI GTAC 2 cut(s) 303, 694
RseI CAYNNNNRTG 2 cut(s) 455, 530
SacII CCGCGG 1 cut(s) 502
SalI GTCGAC 1 cut(s) 712
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 741, 768
SatI GCNGC 6 cut(s) 183, 311, 339, 499, 502, 877
Sau3AI GATC 8 cut(s) 97, 109, 268, 343, 358, 630, 894, 901
Sau96I GGNCC 2 cut(s) 169, 657
SchI GAGTC 3 cut(s) 466, 749, 754
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 2 cut(s) 551, 968
SfaNI GCATC 1 cut(s) 318
SfoI GGCGCC 1 cut(s) 61
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 2 cut(s) 169, 657
SmiMI CAYNNNNRTG 2 cut(s) 455, 530
SmlI CTYRAG 2 cut(s) 707, 740
SmoI CTYRAG 2 cut(s) 707, 740
Sse9I AATT 3 cut(s) 84, 809, 958
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 6 cut(s) 132, 161, 173, 332, 485, 752
StyD4I CCNGG 1 cut(s) 612
TaaI ACNGT 5 cut(s) 91, 205, 605, 859, 872
TaiI ACGT 5 cut(s) 237, 492, 534, 654, 789
TaqI TCGA 2 cut(s) 126, 713
TasI AATT 3 cut(s) 84, 809, 958
TauI GCSGC 4 cut(s) 313, 501, 504, 879
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 2 cut(s) 741, 768
Tru9I TTAA 2 cut(s) 741, 768
TscAI CASTG 2 cut(s) 389, 820
TseFI GTSAC 3 cut(s) 850, 920, 995
TseI GCWGC 2 cut(s) 182, 338
Tsp45I GTSAC 3 cut(s) 850, 920, 995
TspDTI ATGAA 3 cut(s) 439, 737, 978
TspGWI ACGGA 2 cut(s) 536, 542
TspRI CASTG 2 cut(s) 389, 820
Van91I CCANNNNNTGG 1 cut(s) 841
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 169, 657
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 713
XspI CTAG 6 cut(s) 132, 161, 173, 332, 485, 752
ZraI GACGTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.