MD07G1240000.v1.1

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002782
Physical Location & Seq
Reverse (-)
31158642 .. 31159411
770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1240000.v1.1.491

Sequence Viewer

Length: 612 bp
ATGTCACAGGAATTTATTAAGATGATGTGGAGGAGAACTCTCTTCCTCAAAGATTTGCTCAAGTGGGGCTACAGTTTCGTATTCACAGACATAGATGTGATGTGGCTAAGGAATCCATTTCCAAGGCTAAATAGCTTCAATGAGAGCATGGATCTTCAAATCAGTGCTGATAAGTTCAATGGGGATCAATGGTCTGAATCCAACCCCATCAACACAGGCTTTTACATGGTCAGATCCAACAACCGAACAATTTCGTTATTCGAAAAGTGGTACGACAGGAAGAATAACTCCACCGGAATGAAAGAGCAGGATGTTTTAGACAGCATGATGCATGAAGGTGTTTTCAGAGAATTAGGCCTCAGTGTGAAATTTTTAGACACACTTTATTTCAGTGGCTTCTGTGAAGTCAGCAAGGACTTCAAAGCTGTCACGACGGTTCATGCCAATTGCTGCCGAACTATAAGCGCCAAGGTGGCTGATCTGACGGCGGTGATTCATGATTGGAAGAAGTTCGAGAGCTTATCGAATTCGAACCAGACATCGAGTTTGAAATGGACTAACCATGTGAACTGTGAGGATTCCTGGAAAGATTTCAATGTGACCTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

204

Amino Acids

23.79

Weight (kDa)

6.42

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 1 - 161 9.2e-53 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 488
AclWI GGATC 3 cut(s) 159, 192, 228
AcsI RAATTY 3 cut(s) 11, 368, 526
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 6 cut(s) 139, 158, 178, 421, 550, 595
AjnI CCWGG 1 cut(s) 581
AluBI AGCT 3 cut(s) 135, 425, 519
AluI AGCT 3 cut(s) 135, 425, 519
AlwI GGATC 3 cut(s) 159, 192, 228
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 3 cut(s) 11, 368, 526
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
Asp700I GAANNNNTTC 3 cut(s) 250, 509, 590
AspLEI GCGC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 502
AsuII TTCGAA 2 cut(s) 261, 530
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 583
BfaI CTAG 1 cut(s) 610
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 583
BmrFI CCNGG 1 cut(s) 583
BmsI GCATC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 22, 54
Bpu10I CCTNAGC 1 cut(s) 107
Bpu14I TTCGAA 2 cut(s) 261, 530
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 122, 468, 603
BsaWI WCCGGW 1 cut(s) 293
BseBI CCWGG 1 cut(s) 583
BseDI CCNNGG 3 cut(s) 122, 468, 603
BseGI GGATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 294
BsnI GGCC 1 cut(s) 357
Bsp119I TTCGAA 2 cut(s) 261, 530
Bsp143I GATC 4 cut(s) 151, 184, 233, 478
BspACI CCGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 496
BspPI GGATC 3 cut(s) 159, 192, 228
BspT104I TTCGAA 2 cut(s) 261, 530
BssECI CCNNGG 3 cut(s) 122, 468, 603
BssMI GATC 4 cut(s) 151, 184, 233, 478
BssT1I CCWWGG 3 cut(s) 122, 468, 603
Bst2UI CCWGG 1 cut(s) 583
Bst4CI ACNGT 3 cut(s) 74, 436, 572
Bst6I CTCTTC 1 cut(s) 47
BstBI TTCGAA 2 cut(s) 261, 530
BstDEI CTNAG 2 cut(s) 107, 359
BstF5I GGATG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 154, 187, 236, 481
BstMBI GATC 4 cut(s) 151, 184, 233, 478
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 581
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 2 cut(s) 151, 233
BstYI RGATCY 2 cut(s) 151, 233
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 169, 367, 397
CciI TCATGA 1 cut(s) 496
CfoI GCGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 271
CviAII CATG 7 cut(s) 148, 226, 325, 332, 440, 497, 563
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 107, 359
DpnI GATC 4 cut(s) 153, 186, 235, 480
DpnII GATC 4 cut(s) 151, 184, 233, 478
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 3 cut(s) 122, 468, 603
Eco147I AGGCCT 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 581
EcoT14I CCWWGG 3 cut(s) 122, 468, 603
EcoT22I ATGCAT 1 cut(s) 333
ErhI CCWWGG 3 cut(s) 122, 468, 603
FaeI CATG 7 cut(s) 151, 229, 328, 335, 443, 500, 566
FaiI YATR 9 cut(s) 92, 149, 227, 326, 333, 441, 461, 498, 564
FatI CATG 7 cut(s) 147, 225, 324, 331, 439, 496, 562
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 451
FspBI CTAG 1 cut(s) 610
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 467
Hin1II CATG 7 cut(s) 151, 229, 328, 335, 443, 500, 566
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 4 cut(s) 112, 197, 493, 578
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 4 cut(s) 196, 233, 347, 483
Hpy188III TCNNGA 3 cut(s) 430, 497, 514
Hpy8I GTNNAC 1 cut(s) 568
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 3 cut(s) 74, 436, 572
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 2 cut(s) 107, 359
Hsp92II CATG 7 cut(s) 151, 229, 328, 335, 443, 500, 566
HspAI GCGC 1 cut(s) 465
Kzo9I GATC 4 cut(s) 151, 184, 233, 478
LpnPI CCDG 7 cut(s) 201, 262, 293, 307, 548, 568, 595
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 318
MaeI CTAG 1 cut(s) 610
MaeIII GTNAC 3 cut(s) 3, 427, 598
MalI GATC 4 cut(s) 153, 186, 235, 480
MboI GATC 4 cut(s) 151, 184, 233, 478
MboII GAAGA 4 cut(s) 34, 146, 292, 517
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 2 cut(s) 151, 233
MluCI AATT 6 cut(s) 11, 249, 350, 368, 445, 526
MmeI TCCRAC 2 cut(s) 225, 261
MnlI CCTC 4 cut(s) 24, 56, 368, 568
Mph1103I ATGCAT 1 cut(s) 333
MroXI GAANNNNTTC 3 cut(s) 250, 509, 590
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 3 cut(s) 95, 296, 336
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 583
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 583
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeII GATC 4 cut(s) 151, 184, 233, 478
NlaIII CATG 7 cut(s) 151, 229, 328, 335, 443, 500, 566
NmuCI GTSAC 3 cut(s) 3, 427, 598
NsiI ATGCAT 1 cut(s) 333
NspV TTCGAA 2 cut(s) 261, 530
PagI TCATGA 1 cut(s) 496
PceI AGGCCT 1 cut(s) 357
PdmI GAANNNNTTC 3 cut(s) 250, 509, 590
PfeI GAWTC 4 cut(s) 112, 197, 493, 578
PfoI TCCNGGA 1 cut(s) 581
PkrI GCNGC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 581
PspGI CCWGG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 151, 233
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 3 cut(s) 95, 296, 336
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 4 cut(s) 151, 184, 233, 478
ScrFI CCNGG 1 cut(s) 583
SetI ASST 6 cut(s) 137, 340, 427, 474, 521, 605
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 70
SfuI TTCGAA 2 cut(s) 261, 530
SmiMI CAYNNNNRTG 3 cut(s) 95, 296, 336
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 6 cut(s) 11, 249, 350, 368, 445, 526
SseBI AGGCCT 1 cut(s) 357
SsiI CCGC 1 cut(s) 488
SspMI CTAG 1 cut(s) 610
StuI AGGCCT 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 581
StyI CCWWGG 3 cut(s) 122, 468, 603
TaaI ACNGT 3 cut(s) 74, 436, 572
TaqI TCGA 5 cut(s) 261, 513, 524, 530, 542
TasI AATT 6 cut(s) 11, 249, 350, 368, 445, 526
TfiI GAWTC 4 cut(s) 112, 197, 493, 578
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 3 cut(s) 169, 367, 397
TseFI GTSAC 3 cut(s) 3, 427, 598
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 3 cut(s) 3, 427, 598
TspDTI ATGAA 4 cut(s) 314, 348, 428, 485
TspRI CASTG 3 cut(s) 169, 367, 397
XapI RAATTY 3 cut(s) 11, 368, 526
XmnI GAANNNNTTC 3 cut(s) 250, 509, 590
XspI CTAG 1 cut(s) 610
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.