Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

19977877 .. 19979645

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCATAAACATAAAGGGGATCATCATCATCATCATCATCTGCGAGGTGTAGTTAGATCACATTCTGAACCACCTTTGAAAGACAAAGCCTCATCGACTCCCTCTACATCATTTGCTGCAATCGAGAATTACAATAACAACCATCTATTCTATGAGGAGGAGGAATCTGAAACTAGTTGTGAAGATTCAGTCGTCAGACGTTATGATGAAGAAGAAGATTCATCTTGGATATCATGGTTCTGCAATCAAAAAGGGAATGAATTCTTTTGTGAAGTTGACGACGACTATATCCTCGACGATTTCAACCGCTCTGGTTTGAAAAATCAAGTGCCATTCTATGATTACGCATTGGATATGATTTTGGACGTTGAGTCTTCTGACATCGATGGTACCTTACATGATCATGAGCAGAACAACTTGATCGAATCCGCGGCAGAGATGCTCTATGGTTTGATTCATGCTAGATACATAGCAACTACCAAAGGAACTTCTCAAATGTTGGAGAAGTACAGGAACTATGATTTTGGTAGATGTCCGAGAGTTAACTGCAGCAAACAAAGATGTCTACCTGTAGGTGAATCAGACACCCAAGATTGGCTACTGTCAAAATCTACTGTCCCAAGTGTGAAGATATTTACTCCCCACAATCCAGACACCAAGAACAAATCGATGGGGCATACTTCGGAACCACATTTCCTCACCTCTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

238

Amino Acids

27.38

Weight (kDa)

5.28

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	75 - 198	1.5e-45	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccBSI	CCGCTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	1 cut(s)	431
AciI	CCGC	3 cut(s)	307, 429, 431
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	391, 509
AfiI	CCNNNNNNNGG	1 cut(s)	594
AgsI	TTSAA	3 cut(s)	79, 304, 319
AhdI	GACNNNNNGTC	1 cut(s)	370
AhlI	ACTAGT	1 cut(s)	173
AloI	GAACNNNNNNTCC	2 cut(s)	678, 710
AlwI	GGATC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	116, 549
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	587, 691
BanI	GGYRCC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	103, 561
BccI	CCATC	3 cut(s)	150, 380, 664
BclI	TGATCA	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	2 cut(s)	174, 462
BfmI	CTRYAG	2 cut(s)	547, 570
BisI	GCNGC	3 cut(s)	117, 432, 550
BlsI	GCNGC	3 cut(s)	118, 433, 551
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	391, 687
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	366
Bsa29I	ATCGAT	2 cut(s)	384, 668
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	24
BseCI	ATCGAT	2 cut(s)	384, 668
BseDI	CCNNGG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	170, 173
BseXI	GCAGC	2 cut(s)	103, 561
Bsh1236I	CGCG	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	2 cut(s)	384, 668
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	602
Bsp143I	GATC	4 cut(s)	19, 56, 400, 420
BspACI	CCGC	3 cut(s)	307, 429, 431
BspDI	ATCGAT	2 cut(s)	384, 668
BspFNI	CGCG	1 cut(s)	431
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	391, 687
BspMAI	CTGCAG	1 cut(s)	551
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	19, 56, 400, 420
Bst4CI	ACNGT	2 cut(s)	603, 616
BstDSI	CCRYGG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	4 cut(s)	22, 59, 403, 423
BstMBI	GATC	4 cut(s)	19, 56, 400, 420
BstSFI	CTRYAG	2 cut(s)	547, 570
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	103, 561
BstV2I	GAAGAC	1 cut(s)	366
Bsu15I	ATCGAT	2 cut(s)	384, 668
BsuTUI	ATCGAT	2 cut(s)	384, 668
BtgI	CCRYGG	1 cut(s)	429
CciI	TCATGA	1 cut(s)	403
Cfr42I	CCGCGG	1 cut(s)	432
ClaI	ATCGAT	2 cut(s)	384, 668
Csp6I	GTAC	2 cut(s)	390, 508
CviAII	CATG	4 cut(s)	234, 398, 404, 458
CviJI	RGCY	2 cut(s)	89, 598
CviKI_1	RGCY	2 cut(s)	89, 598
CviQI	GTAC	2 cut(s)	390, 508
DpnI	GATC	4 cut(s)	21, 58, 402, 422
DpnII	GATC	4 cut(s)	19, 56, 400, 420
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	237, 401, 407, 461
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	4 cut(s)	233, 397, 403, 457
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	117, 432, 550
Fsp4HI	GCNGC	3 cut(s)	117, 432, 550
FspBI	CTAG	2 cut(s)	174, 462
GluI	GCNGC	3 cut(s)	117, 432, 550
Hin1II	CATG	4 cut(s)	237, 401, 407, 461
HincII	GTYRAC	2 cut(s)	277, 544
HindII	GTYRAC	2 cut(s)	277, 544
HinfI	GANTC	8 cut(s)	97, 164, 185, 218, 371, 425, 454, 578
HpaI	GTTAAC	1 cut(s)	544
HphI	GGTGA	2 cut(s)	587, 691
Hpy166II	GTNNAC	3 cut(s)	277, 544, 566
Hpy188I	TCNGA	7 cut(s)	67, 169, 197, 379, 537, 583, 685
Hpy188III	TCNNGA	4 cut(s)	124, 404, 650, 711
Hpy8I	GTNNAC	3 cut(s)	277, 544, 566
Hpy99I	CGWCG	2 cut(s)	284, 299
HpyCH4III	ACNGT	2 cut(s)	603, 616
HpyCH4IV	ACGT	2 cut(s)	199, 366
HpyCH4V	TGCA	4 cut(s)	4, 119, 243, 549
HpySE526I	ACGT	2 cut(s)	199, 366
Hsp92II	CATG	4 cut(s)	237, 401, 407, 461
KpnI	GGTACC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	544
KspI	CCGCGG	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	19, 56, 400, 420
LpnPI	CCDG	4 cut(s)	297, 496, 582, 663
Lsp1109I	GCAGC	2 cut(s)	103, 561
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	174, 462
MaeII	ACGT	2 cut(s)	199, 366
MalI	GATC	4 cut(s)	21, 58, 402, 422
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	4 cut(s)	19, 56, 400, 420
MboII	GAAGA	6 cut(s)	194, 221, 224, 227, 366, 640
MluCI	AATT	2 cut(s)	127, 260
MlyI	GAGTC	2 cut(s)	91, 380
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	9 cut(s)	38, 100, 112, 148, 151, 154, 302, 707, 712
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	431
NdeII	GATC	4 cut(s)	19, 56, 400, 420
NlaIII	CATG	4 cut(s)	237, 401, 407, 461
NlaIV	GGNNCC	2 cut(s)	391, 687
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	6 cut(s)	164, 185, 218, 425, 454, 578
PkrI	GCNGC	3 cut(s)	118, 433, 551
PleI	GAGTC	2 cut(s)	91, 379
PpsI	GAGTC	2 cut(s)	91, 379
PspN4I	GGNNCC	2 cut(s)	391, 687
PstI	CTGCAG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	391, 509
RsaNI	GTAC	2 cut(s)	390, 508
RseI	CAYNNNNRTG	1 cut(s)	402
SacII	CCGCGG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	3 cut(s)	117, 432, 550
Sau3AI	GATC	4 cut(s)	19, 56, 400, 420
SchI	GAGTC	2 cut(s)	91, 380
SetI	ASST	8 cut(s)	49, 76, 202, 369, 395, 571, 577, 704
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	2 cut(s)	547, 570
Sfr303I	CCGCGG	1 cut(s)	432
SgrBI	CCGCGG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	402
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	2 cut(s)	127, 260
SsiI	CCGC	3 cut(s)	307, 429, 431
SspMI	CTAG	2 cut(s)	174, 462
TaaI	ACNGT	2 cut(s)	603, 616
TaiI	ACGT	2 cut(s)	202, 369
TaqI	TCGA	6 cut(s)	95, 123, 294, 384, 423, 668
TasI	AATT	2 cut(s)	127, 260
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	6 cut(s)	164, 185, 218, 425, 454, 578
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TseI	GCWGC	2 cut(s)	116, 549
TspDTI	ATGAA	4 cut(s)	210, 222, 273, 446
XapI	RAATTY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	174, 462
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.