Rh7AG229100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006458
Physical Location & Seq
Forward (+)
21665270 .. 21665626
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG229100.1

Sequence Viewer

Length: 357 bp
ATGAGACTCTACAGTGGCTTGCTGATAAGATTCCATGAACAACTGAACAAGTTTGTCCAGTGGCAGATTGGAGATGGAACTCTGTTTCTCGGGTTTAGACGCTTCGTCCCTCCGTTATATTCATGTTCTTCTATCGACACTGAGCAAGTGTTCTGCTTCCCACAACGCATAGCAGCATATGCTGTCCTTACCGCACGTGACAAAAAACACACTCCCTTAATTGGTGAGTGGACCCCACATCGGAGGGTCAGAGGAGAGAGGGAATGTCAACCCAGTTTCTTCTCAGAGCAGCTACTCCCATTCCGGCACCATCGCATTCCCCAAATTCCTTTTCCCCCTTCAATTTTTCTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.97

Weight (kDa)

9.8

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 306
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 324
AcvI CACGTG 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 221, 240
AgsI TTSAA 1 cut(s) 342
AhdI GACNNNNNGTC 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 173, 289
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 306
BbrPI CACGTG 1 cut(s) 197
BbvI GCAGC 2 cut(s) 185, 301
BccI CCATC 2 cut(s) 68, 318
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 2 cut(s) 174, 290
BlsI GCNGC 2 cut(s) 175, 291
Bme18I GGWCC 1 cut(s) 231
BmeRI GACNNNNNGTC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 233, 308
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 240
Bse1I ACTGG 2 cut(s) 58, 273
BseLI CCNNNNNNNGG 2 cut(s) 221, 240
BseMII CTCAG 2 cut(s) 132, 297
BseNI ACTGG 2 cut(s) 58, 273
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 185, 301
BshNI GGYRCC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 221, 240
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 89
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 133, 296
BspLI GGNNCC 2 cut(s) 233, 308
BspT107I GGYRCC 1 cut(s) 306
BsrI ACTGG 2 cut(s) 58, 273
Bst4CI ACNGT 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 141, 283
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 185, 301
BtgZI GCGATG 1 cut(s) 296
BtsIMutI CAGTG 3 cut(s) 19, 65, 138
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 108
CviAII CATG 2 cut(s) 35, 123
CviJI RGCY 2 cut(s) 18, 292
CviKI_1 RGCY 2 cut(s) 18, 292
DdeI CTNAG 2 cut(s) 141, 283
DriI GACNNNNNGTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 231
Eco72I CACGTG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 89
FaeI CATG 2 cut(s) 38, 126
FaiI YATR 6 cut(s) 36, 118, 124, 170, 178, 180
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 34, 122
FauNDI CATATG 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 174, 290
Fsp4HI GCNGC 2 cut(s) 174, 290
GluI GCNGC 2 cut(s) 174, 290
HapII CCGG 1 cut(s) 304
HgaI GACGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 38, 126
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 2 cut(s) 6, 30
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 231, 269
Hpy188I TCNGA 3 cut(s) 243, 251, 286
Hpy8I GTNNAC 2 cut(s) 231, 269
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 141, 283
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 2 cut(s) 38, 126
LpnPI CCDG 3 cut(s) 71, 286, 317
Lsp1109I GCAGC 2 cut(s) 185, 301
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 2 cut(s) 120, 271
MluCI AATT 3 cut(s) 219, 324, 342
MnlI CCTC 4 cut(s) 120, 237, 245, 252
MseI TTAA 2 cut(s) 218, 355
MspI CCGG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeI CATATG 1 cut(s) 178
NlaIII CATG 2 cut(s) 38, 126
NlaIV GGNNCC 2 cut(s) 233, 308
NmuCI GTSAC 1 cut(s) 197
PctI GAATGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 175, 291
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 197
PspCI CACGTG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 233, 308
PspPI GGNCC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 218, 355
SatI GCNGC 2 cut(s) 174, 290
Sau96I GGNCC 1 cut(s) 231
SetI ASST 2 cut(s) 199, 294
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 231
Sse9I AATT 3 cut(s) 219, 324, 342
SsiI CCGC 1 cut(s) 192
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 135
TasI AATT 3 cut(s) 219, 324, 342
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 218, 355
Tru9I TTAA 2 cut(s) 218, 355
TscAI CASTG 3 cut(s) 19, 65, 145
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 173, 289
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 51, 111
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 3 cut(s) 19, 65, 145
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.