Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

61834490 .. 61836327

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCATAAAGATAAAGGGGATCATCATCATCATCTGCGAGGTGTAGTTAGATCACATTCTGAACCGGCTTTGAAAGACAAATCTTCATACACTCCCTCCACGTCATTTGCTGCAATTGGCCATTACAATGACAACAATCTATTCTTTGAAGAGGGTCAGTTCCTTTCATACACCCAATACCTACCTGTGTATGCATATGAGTCTGAAACAAGTTGCGAAGATTCAGACGTTAGACGTTTTGATGAAGAAGAAGATTCATCTTGGATATCATGGTTCTGCAATCAAAAAGGGAATGAATTCTTCTGTGAAGTTGACGACGACTATATCCTAGACGATTTCAACCGCTCTGGTTTGAGAAATCAAGTGCCATTCTATGATTACGCATTGGATATGATTTTGGACGTTGAGTCTTCTGATATCGATGGTACCTTACATGATCATGAGCAGAATAACTTGATCGAATCCGCGGCAGAGATGCTCTACGGTTTGATTCATGCCAGATACATAACAACTACTAAAGGAATTTCTGCAATGTTGGAGAAGTACAGGAACTATGATTTTGGTAGATGTCCAAGAGTTAACTGCAACAAACAAAGATGTCTACCTGTAGGTGAGTCTGACATTCCAAGATTGACTACCGTCAAAATCTACTGTCCCAGGTGTGAAGATATCTACTCTCCACAATCCAGACACCAAGAACAAATCGATGGGGCATATTTTGGAACCACGTTTCCTCACCTGTTTTTCTTGACTTATGGGCATCTTAAGCCAGAGAAGACAAGTCAGAACTATGCTCCAAGAATATTTGGCTTCAAAGTCCACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

276

Amino Acids

32.19

Weight (kDa)

5.41

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	87 - 272	2.3e-76	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	467
AciI	CCGC	3 cut(s)	343, 465, 467
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	296, 522
AfaI	GTAC	2 cut(s)	427, 545
AflII	CTTAAG	1 cut(s)	764
AgsI	TTSAA	4 cut(s)	73, 149, 340, 814
AhdI	GACNNNNNGTC	1 cut(s)	406
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	656
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	296, 522
Asp700I	GAANNNNTTC	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	623, 728
BalI	TGGCCA	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	425
BbsI	GAAGAC	2 cut(s)	402, 782
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	416, 701
BciT130I	CCWGG	1 cut(s)	658
BclI	TGATCA	1 cut(s)	436
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	764
BisI	GCNGC	2 cut(s)	111, 468
BlsI	GCNGC	2 cut(s)	112, 469
Bme1390I	CCNGG	1 cut(s)	658
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmgBI	CACGTC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	427, 724
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	2 cut(s)	465, 769
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	2 cut(s)	402, 782
Bsa29I	ATCGAT	2 cut(s)	420, 705
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	465, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	658
BseCI	ATCGAT	2 cut(s)	420, 705
BseDI	CCNNGG	2 cut(s)	465, 656
BseJI	GATNNNNATC	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	425
BshVI	ATCGAT	2 cut(s)	420, 705
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	639
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	19, 50, 436, 456
BspACI	CCGC	3 cut(s)	343, 465, 467
BspANI	GGCC	1 cut(s)	120
BspDI	ATCGAT	2 cut(s)	420, 705
BspFNI	CGCG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	427, 724
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	465, 656
BssMI	GATC	4 cut(s)	19, 50, 436, 456
Bst2UI	CCWGG	1 cut(s)	658
Bst4CI	ACNGT	3 cut(s)	485, 640, 653
Bst6I	CTCTTC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	764
BstDSI	CCRYGG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	4 cut(s)	22, 53, 439, 459
BstMBI	GATC	4 cut(s)	19, 50, 436, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	1 cut(s)	658
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	656
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	2 cut(s)	402, 782
Bsu15I	ATCGAT	2 cut(s)	420, 705
BsuRI	GGCC	1 cut(s)	120
BsuTUI	ATCGAT	2 cut(s)	420, 705
BtgI	CCRYGG	1 cut(s)	465
BtrI	CACGTC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	64
Cfr42I	CCGCGG	1 cut(s)	468
ClaI	ATCGAT	2 cut(s)	420, 705
Csp6I	GTAC	2 cut(s)	426, 544
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	4 cut(s)	270, 434, 440, 494
CviJI	RGCY	4 cut(s)	68, 120, 769, 810
CviKI_1	RGCY	4 cut(s)	68, 120, 769, 810
CviQI	GTAC	2 cut(s)	426, 544
DpnI	GATC	4 cut(s)	21, 52, 438, 458
DpnII	GATC	4 cut(s)	19, 50, 436, 456
DriI	GACNNNNNGTC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	144
Eco32I	GATATC	3 cut(s)	267, 418, 670
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	656
EcoRV	GATATC	3 cut(s)	267, 418, 670
EcoT22I	ATGCAT	2 cut(s)	6, 196
FaeI	CATG	4 cut(s)	273, 437, 443, 497
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	4 cut(s)	269, 433, 439, 493
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	111, 468
Fsp4HI	GCNGC	2 cut(s)	111, 468
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	111, 468
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	4 cut(s)	273, 437, 443, 497
HincII	GTYRAC	2 cut(s)	313, 580
HindII	GTYRAC	2 cut(s)	313, 580
HinfI	GANTC	7 cut(s)	200, 221, 254, 407, 461, 490, 614
HpaI	GTTAAC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	623, 728
Hpy166II	GTNNAC	4 cut(s)	313, 580, 602, 820
Hpy188I	TCNGA	6 cut(s)	61, 205, 226, 415, 619, 786
Hpy188III	TCNNGA	3 cut(s)	440, 687, 748
Hpy8I	GTNNAC	4 cut(s)	313, 580, 602, 820
Hpy99I	CGWCG	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	485, 640, 653
HpyCH4IV	ACGT	5 cut(s)	101, 228, 235, 402, 728
HpyCH4V	TGCA	6 cut(s)	4, 113, 194, 279, 530, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpySE526I	ACGT	5 cut(s)	101, 228, 235, 402, 728
Hsp92II	CATG	4 cut(s)	273, 437, 443, 497
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	436
KspAI	GTTAAC	1 cut(s)	580
KspI	CCGCGG	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	19, 50, 436, 456
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	465, 769
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	5 cut(s)	101, 228, 235, 402, 728
MalI	GATC	4 cut(s)	21, 52, 438, 458
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	4 cut(s)	19, 50, 436, 456
MfeI	CAATTG	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	3 cut(s)	114, 296, 522
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	3 cut(s)	209, 416, 623
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	4 cut(s)	32, 106, 145, 744
Mox20I	TGGCCA	1 cut(s)	120
Mph1103I	ATGCAT	2 cut(s)	6, 196
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	2 cut(s)	579, 765
MslI	CAYNNNNRTG	2 cut(s)	126, 438
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	658
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	658
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	766
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	4 cut(s)	19, 50, 436, 456
NlaIII	CATG	4 cut(s)	273, 437, 443, 497
NlaIV	GGNNCC	2 cut(s)	427, 724
NsiI	ATGCAT	2 cut(s)	6, 196
PagI	TCATGA	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	221, 254, 461, 490
PkrI	GCNGC	2 cut(s)	112, 469
PleI	GAGTC	3 cut(s)	208, 415, 622
PpsI	GAGTC	3 cut(s)	208, 415, 622
PshAI	GACNNNNGTC	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	656
PspN4I	GGNNCC	2 cut(s)	427, 724
RsaI	GTAC	2 cut(s)	427, 545
RsaNI	GTAC	2 cut(s)	426, 544
RseI	CAYNNNNRTG	2 cut(s)	126, 438
SacII	CCGCGG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	579, 765
SatI	GCNGC	2 cut(s)	111, 468
Sau3AI	GATC	4 cut(s)	19, 50, 436, 456
SchI	GAGTC	3 cut(s)	209, 416, 623
ScrFI	CCNGG	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	465, 769
SfcI	CTRYAG	1 cut(s)	606
Sfr303I	CCGCGG	1 cut(s)	468
SgrBI	CCGCGG	1 cut(s)	468
SmiMI	CAYNNNNRTG	2 cut(s)	126, 438
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	3 cut(s)	114, 296, 522
SsiI	CCGC	3 cut(s)	343, 465, 467
SspI	AATATT	1 cut(s)	804
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	656
TaaI	ACNGT	3 cut(s)	485, 640, 653
TaiI	ACGT	5 cut(s)	104, 231, 238, 405, 731
TaqI	TCGA	3 cut(s)	420, 459, 705
TasI	AATT	3 cut(s)	114, 296, 522
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	4 cut(s)	221, 254, 461, 490
Tru1I	TTAA	2 cut(s)	579, 765
Tru9I	TTAA	2 cut(s)	579, 765
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	6 cut(s)	75, 156, 246, 258, 309, 482
Vha464I	CTTAAG	1 cut(s)	764
XapI	RAATTY	2 cut(s)	296, 522
XmiI	GTMKAC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	2 cut(s)	6, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.