Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000425.1

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Reverse (-)

58534 .. 59251

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000425.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgcataaagataaaggggatcatcatcatcatctgcgaggtgtagttagatcacattctgaaccggctttgaaagacaaatcttcatacactccctccacgtcatttgctgcaattggccattacaatgacaacaatctattctttgaagaggaggaatctgaaacaagttgcgaagattcagacgttagacgttttgatgaagaagaagattcatcttggatatcatggttctgcaatcaaaaagggaatgaattcttctgtgaagttgacgacgactatatcctagacgatttcaaccgctctggtttgagaaatcaagtgccattctatgattacgcattggatatgattttggacgttgagtcttctgatatcggtaaaacttacctggccattttccatgactgctttgtagaaaaattatatttagttatcctgcgatttcaattgcattgctacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

155

Amino Acids

18.32

Weight (kDa)

4.63

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	303
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	118, 393
AcsI	RAATTY	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	73, 149, 298, 449
AhdI	GACNNNNNGTC	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	390
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	2 cut(s)	118, 393
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	254
BalI	TGGCCA	2 cut(s)	120, 395
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	2 cut(s)	287, 466
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	392
BseJI	GATNNNNATC	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	120, 395
BsiSI	CCGG	1 cut(s)	65
BsnI	GGCC	2 cut(s)	120, 395
Bsp143I	GATC	2 cut(s)	19, 50
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	120, 395
BspPI	GGATC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	2 cut(s)	19, 50
Bst2UI	CCWGG	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	22, 53
BstMBI	GATC	2 cut(s)	19, 50
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	120, 395
BtrI	CACGTC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	2 cut(s)	228, 404
CviJI	RGCY	3 cut(s)	68, 120, 395
CviKI_1	RGCY	3 cut(s)	68, 120, 395
DpnI	GATC	2 cut(s)	21, 52
DpnII	GATC	2 cut(s)	19, 50
DriI	GACNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	2 cut(s)	118, 393
Eam1104I	CTCTTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	144
Eco32I	GATATC	2 cut(s)	225, 376
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	390
EcoRV	GATATC	2 cut(s)	225, 376
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	231, 407
FaiI	YATR	8 cut(s)	6, 88, 229, 282, 333, 350, 405, 427
FatI	CATG	2 cut(s)	227, 403
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	287, 466
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	120, 395
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	2 cut(s)	231, 407
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	158, 179, 212, 365
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	61, 163, 184, 373
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4IV	ACGT	4 cut(s)	101, 186, 193, 360
HpyCH4V	TGCA	4 cut(s)	4, 113, 237, 454
HpySE526I	ACGT	4 cut(s)	101, 186, 193, 360
Hsp92II	CATG	2 cut(s)	231, 407
Kzo9I	GATC	2 cut(s)	19, 50
LpnPI	CCDG	5 cut(s)	78, 291, 377, 404, 452
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	287, 466
MaeII	ACGT	4 cut(s)	101, 186, 193, 360
MalI	GATC	2 cut(s)	21, 52
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	2 cut(s)	19, 50
MboII	GAAGA	8 cut(s)	75, 161, 188, 215, 218, 221, 250, 360
MfeI	CAATTG	2 cut(s)	114, 449
MlsI	TGGCCA	2 cut(s)	120, 395
MluCI	AATT	4 cut(s)	114, 254, 422, 449
MluNI	TGGCCA	2 cut(s)	120, 395
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	32, 106, 145, 148
Mox20I	TGGCCA	2 cut(s)	120, 395
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	2 cut(s)	120, 395
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	2 cut(s)	120, 395
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	2 cut(s)	114, 449
MvaI	CCWGG	1 cut(s)	392
NdeII	GATC	2 cut(s)	19, 50
NlaIII	CATG	2 cut(s)	231, 407
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	158, 179, 212
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	19, 50
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	392
SetI	ASST	6 cut(s)	43, 104, 189, 196, 363, 393
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	4 cut(s)	114, 254, 422, 449
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	287, 466
StyD4I	CCNGG	1 cut(s)	390
TaiI	ACGT	4 cut(s)	104, 189, 196, 363
TasI	AATT	4 cut(s)	114, 254, 422, 449
TfiI	GAWTC	3 cut(s)	158, 179, 212
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	75, 204, 216, 267
XapI	RAATTY	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	287, 466
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.