Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

48108236 .. 48110093

Gene Structure 1858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG348000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCATAAAGATAAAGGGGATCATCATCATCATCTGCGAGGTGTGGTTAGATCACATTCTGAACCGGCTTTGAAAGACAAATCTTCATACACTCCCTCCACGTCATTTGCTGCAATTGGCCATTACAATGACAACAATCTATTCTTTGAAGAGGAGGAATCTGAAACAAGTTCCGAAGATTCAGACGTTAGACGTTTTGATGAAGAAGAAGATTCATCTTGGATATCATGGTTCTGCAATCAAAAAGGGAATGAATTCTTCTGTGAAGTTGACGACGACTATATCCTAGACGATTTCAACCGCTCTGGTTTGAGAAATCAAGTGCCATTCTATGATTATGCATTGGATATGATTTTGGACGTTGAGTCTTCTGATATCGATGGTACCTTACATGATCATGAGCAGAATAACTTGATCGAATCCGCGGCAGAGATGCTCTACGGTTTGATTCATGCCAGATACATAACAACTACTAAAGGAATTTCTGCAATGTTGGAGAAGTACAGGAGCTATGATTTTGGTAGATGTCCAAGAGTTAACTGCAACAAACAAAGATGTCTACCTGTAGGTGAGTCTGACATTCCAAGATTGACTACCGTCAAAATATACTGTCCCAGGTGTGAAGATATCTACTCTCCACAATCCAGACACCAAGAACAAATCGATGGGGCATATTTTGGAACCACGTTTCCTCACCTATTTTTCTTGACTTATGAGCATCTTAAGCCAGAGAAGGCAAGTCAGAACTATGCTCCAAGAATATTTGGCTTCAAAATCCACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

262

Amino Acids

30.54

Weight (kDa)

5.26

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	73 - 258	1.2e-76	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	559
AccII	CGCG	1 cut(s)	425
AciI	CCGC	3 cut(s)	301, 423, 425
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	254, 480
AfaI	GTAC	2 cut(s)	385, 503
AflII	CTTAAG	1 cut(s)	722
AgsI	TTSAA	4 cut(s)	73, 149, 298, 772
AhdI	GACNNNNNGTC	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	614
AloI	GAACNNNNNNTCC	2 cut(s)	673, 705
AluBI	AGCT	1 cut(s)	510
AluI	AGCT	1 cut(s)	510
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	254, 480
Asp700I	GAANNNNTTC	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	581, 686
BalI	TGGCCA	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	374, 659
BciT130I	CCWGG	1 cut(s)	616
BclI	TGATCA	1 cut(s)	394
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	564
BfrI	CTTAAG	1 cut(s)	722
BisI	GCNGC	2 cut(s)	111, 426
BlsI	GCNGC	2 cut(s)	112, 427
Bme1390I	CCNGG	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	385, 682
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	423, 727
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	360
Bsa29I	ATCGAT	2 cut(s)	378, 663
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	423, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	616
BseCI	ATCGAT	2 cut(s)	378, 663
BseDI	CCNNGG	2 cut(s)	423, 614
BseJI	GATNNNNATC	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	383
BshVI	ATCGAT	2 cut(s)	378, 663
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	19, 50, 394, 414
BspACI	CCGC	3 cut(s)	301, 423, 425
BspANI	GGCC	1 cut(s)	120
BspDI	ATCGAT	2 cut(s)	378, 663
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	385, 682
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	423, 614
BssMI	GATC	4 cut(s)	19, 50, 394, 414
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	3 cut(s)	443, 598, 611
Bst6I	CTCTTC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	722
BstDSI	CCRYGG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	425
BstKTI	GATC	4 cut(s)	22, 53, 397, 417
BstMBI	GATC	4 cut(s)	19, 50, 394, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	724
BstNI	CCWGG	1 cut(s)	616
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	614
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	360
Bsu15I	ATCGAT	2 cut(s)	378, 663
BsuRI	GGCC	1 cut(s)	120
BsuTUI	ATCGAT	2 cut(s)	378, 663
BtgI	CCRYGG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	64
Cfr42I	CCGCGG	1 cut(s)	426
ClaI	ATCGAT	2 cut(s)	378, 663
Csp6I	GTAC	2 cut(s)	384, 502
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	4 cut(s)	228, 392, 398, 452
CviJI	RGCY	5 cut(s)	68, 120, 510, 727, 768
CviKI_1	RGCY	5 cut(s)	68, 120, 510, 727, 768
CviQI	GTAC	2 cut(s)	384, 502
DpnI	GATC	4 cut(s)	21, 52, 396, 416
DpnII	GATC	4 cut(s)	19, 50, 394, 414
DriI	GACNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	144
Eco32I	GATATC	3 cut(s)	225, 376, 628
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	614
EcoRV	GATATC	3 cut(s)	225, 376, 628
EcoT22I	ATGCAT	2 cut(s)	6, 343
FaeI	CATG	4 cut(s)	231, 395, 401, 455
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	4 cut(s)	227, 391, 397, 451
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	111, 426
Fsp4HI	GCNGC	2 cut(s)	111, 426
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	2 cut(s)	111, 426
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	4 cut(s)	231, 395, 401, 455
HincII	GTYRAC	2 cut(s)	271, 538
HindII	GTYRAC	2 cut(s)	271, 538
HinfI	GANTC	7 cut(s)	158, 179, 212, 365, 419, 448, 572
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	581, 686
Hpy166II	GTNNAC	3 cut(s)	271, 538, 560
Hpy188I	TCNGA	7 cut(s)	61, 163, 175, 184, 373, 577, 744
Hpy188III	TCNNGA	3 cut(s)	398, 645, 706
Hpy8I	GTNNAC	3 cut(s)	271, 538, 560
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	727
HpyCH4III	ACNGT	3 cut(s)	443, 598, 611
HpyCH4IV	ACGT	5 cut(s)	101, 186, 193, 360, 686
HpyCH4V	TGCA	6 cut(s)	4, 113, 237, 341, 488, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	724
HpySE526I	ACGT	5 cut(s)	101, 186, 193, 360, 686
Hsp92II	CATG	4 cut(s)	231, 395, 401, 455
KpnI	GGTACC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	538
KspI	CCGCGG	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	19, 50, 394, 414
LmnI	GCTCC	2 cut(s)	507, 757
LpnPI	CCDG	9 cut(s)	78, 291, 469, 490, 576, 601, 628, 658, 741
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	423, 727
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	5 cut(s)	101, 186, 193, 360, 686
MalI	GATC	4 cut(s)	21, 52, 396, 416
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	4 cut(s)	19, 50, 394, 414
MboII	GAAGA	9 cut(s)	75, 161, 188, 215, 218, 221, 250, 360, 635
MfeI	CAATTG	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	3 cut(s)	114, 254, 480
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	2 cut(s)	374, 581
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	5 cut(s)	32, 106, 145, 148, 702
Mox20I	TGGCCA	1 cut(s)	120
Mph1103I	ATGCAT	2 cut(s)	6, 343
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	2 cut(s)	537, 723
MslI	CAYNNNNRTG	2 cut(s)	126, 396
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	722
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	616
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	616
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	724
NdeII	GATC	4 cut(s)	19, 50, 394, 414
NlaIII	CATG	4 cut(s)	231, 395, 401, 455
NlaIV	GGNNCC	2 cut(s)	385, 682
NsiI	ATGCAT	2 cut(s)	6, 343
PagI	TCATGA	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	5 cut(s)	158, 179, 212, 419, 448
PkrI	GCNGC	2 cut(s)	112, 427
PleI	GAGTC	2 cut(s)	373, 580
PpsI	GAGTC	2 cut(s)	373, 580
PshAI	GACNNNNGTC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	2 cut(s)	385, 682
RsaI	GTAC	2 cut(s)	385, 503
RsaNI	GTAC	2 cut(s)	384, 502
RseI	CAYNNNNRTG	2 cut(s)	126, 396
SacII	CCGCGG	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	537, 723
SatI	GCNGC	2 cut(s)	111, 426
Sau3AI	GATC	4 cut(s)	19, 50, 394, 414
SchI	GAGTC	2 cut(s)	374, 581
ScrFI	CCNGG	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	423, 727
SfcI	CTRYAG	1 cut(s)	564
Sfr303I	CCGCGG	1 cut(s)	426
SgrBI	CCGCGG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	126, 396
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	3 cut(s)	114, 254, 480
SsiI	CCGC	3 cut(s)	301, 423, 425
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	3 cut(s)	443, 598, 611
TaiI	ACGT	5 cut(s)	104, 189, 196, 363, 689
TaqI	TCGA	3 cut(s)	378, 417, 663
TasI	AATT	3 cut(s)	114, 254, 480
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	5 cut(s)	158, 179, 212, 419, 448
Tru1I	TTAA	2 cut(s)	537, 723
Tru9I	TTAA	2 cut(s)	537, 723
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	5 cut(s)	75, 204, 216, 267, 440
Vha464I	CTTAAG	1 cut(s)	722
XapI	RAATTY	2 cut(s)	254, 480
XmiI	GTMKAC	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	287
Zsp2I	ATGCAT	2 cut(s)	6, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.